Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99840 * 2 1 4 4 C 1.52996 * 109.47111 * 124.99884 * 3 2 1 5 5 H 1.09001 * 112.79001 * 294.19001 * 4 3 2 6 6 C 1.53517 * 113.47689 * 163.38103 * 4 3 2 7 7 C 1.53508 * 83.57588 * 219.21111 * 6 4 3 8 8 N 1.47479 * 87.93651 * 26.02216 * 7 6 4 9 9 C 1.46897 * 111.00198 * 221.29837 * 8 7 6 10 10 C 1.52993 * 109.47250 * 294.24471 * 9 8 7 11 11 H 1.08998 * 109.47267 * 56.09710 * 10 9 8 12 12 O 1.42900 * 109.47190 * 296.10095 * 10 9 8 13 13 C 1.50697 * 109.47484 * 176.09851 * 10 9 8 14 14 H 1.08001 * 119.99501 * 0.02562 * 13 10 9 15 15 C 1.37870 * 120.00320 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00395 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00333 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47395 * 89.99519 * 17 15 13 19 19 H 1.48500 * 109.47379 * 209.99830 * 17 15 13 20 20 H 1.48504 * 109.47023 * 329.99734 * 17 15 13 21 21 H 1.08000 * 119.99604 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00663 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00663 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.46596 * 4.99576 * 3 2 1 25 25 H 1.09000 * 109.46752 * 245.00102 * 3 2 1 26 26 H 1.08995 * 114.17216 * 105.55778 * 6 4 3 27 27 H 1.09005 * 114.16639 * 332.85439 * 6 4 3 28 28 H 1.08998 * 113.47563 * 271.25595 * 7 6 4 29 29 H 1.08995 * 113.47859 * 140.78944 * 7 6 4 30 30 H 1.08997 * 109.46853 * 174.24524 * 9 8 7 31 31 H 1.08994 * 109.47358 * 54.25201 * 9 8 7 32 32 H 0.96697 * 113.99921 * 299.99684 * 12 10 9 33 33 H 0.96996 * 120.00524 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 1 2.5268 1.3408 2.1459 6 6 4.1216 2.4101 1.0545 7 6 5.0261 1.3231 1.6518 8 7 4.1030 0.3204 1.0883 9 6 3.8731 -0.7762 2.0383 10 6 5.1760 -1.5498 2.2493 11 1 5.9560 -0.8644 2.5808 12 8 5.5710 -2.1618 1.0198 13 6 4.9648 -2.6141 3.2951 14 1 3.9976 -2.7275 3.7622 15 6 6.0060 -3.4428 3.6555 16 7 7.1836 -3.3050 3.0863 17 14 5.7439 -4.7625 4.9513 18 1 5.2988 -6.0184 4.2959 19 1 7.0178 -5.0061 5.6745 20 1 4.7066 -4.3120 5.9138 21 1 -0.5399 -0.9353 -0.0004 22 1 -0.5401 0.9352 0.0004 23 1 1.8500 -0.9352 -0.0004 24 1 1.3584 2.1316 0.0895 25 1 2.6212 1.4027 -0.9314 26 1 3.9727 3.2731 1.7034 27 1 4.3657 2.6787 0.0267 28 1 5.0493 1.3280 2.7415 29 1 6.0214 1.2945 1.2085 30 1 3.1121 -1.4477 1.6408 31 1 3.5351 -0.3672 2.9904 32 1 4.9230 -2.7857 0.6651 33 1 7.9160 -3.8882 3.3395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934462061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = -3.003074 kcal Electronic energy + Delta-G solvation = -14255.476694 eV Core-core repulsion = 11896.626361 eV Total energy + Delta-G solvation = -2358.850332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85317 -35.56138 -34.35358 -32.08227 -30.47275 -28.21482 -26.86691 -23.74386 -23.13025 -20.55428 -19.53702 -19.18247 -17.04877 -15.76647 -14.97626 -14.67808 -14.54672 -14.35406 -13.72003 -13.60674 -12.86792 -12.51786 -11.94032 -11.76099 -11.68588 -11.28234 -11.08313 -10.93980 -10.82303 -10.55070 -10.34541 -10.00271 -9.95676 -9.18932 -8.90928 -8.57428 -8.22733 -8.01103 -5.99870 -4.18627 2.47388 3.27374 3.34299 3.36803 4.34823 4.49790 4.76466 5.05998 5.26841 5.27533 5.40411 5.53523 5.68336 5.72152 5.82609 5.95598 5.97540 6.13388 6.16327 6.23183 6.28705 6.46333 6.53183 6.77152 6.88757 6.93518 7.05493 7.64567 7.75556 7.86339 8.20652 8.85298 9.46148 9.62433 11.04245 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037224 B = 0.008007 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.017437 B = 3496.307216 C = 3899.549040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.133 4.133 3 C -0.074 4.074 4 C 0.023 3.977 5 H 0.070 0.930 6 C -0.145 4.145 7 C 0.004 3.996 8 N -0.453 5.453 9 C -0.003 4.003 10 C 0.236 3.764 11 H 0.054 0.946 12 O -0.556 6.556 13 C -0.575 4.575 14 H 0.054 0.946 15 C 0.080 3.920 16 N -0.859 5.859 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.113 0.887 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.343 0.657 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 8.842 -3.702 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.151 4.151 3 C -0.112 4.112 4 C -0.086 4.086 5 H 0.088 0.912 6 C -0.183 4.183 7 C -0.125 4.125 8 N -0.175 5.175 9 C -0.132 4.132 10 C 0.178 3.822 11 H 0.072 0.928 12 O -0.358 6.358 13 C -0.613 4.613 14 H 0.072 0.928 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.131 0.869 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.186 0.814 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.888 8.795 -4.235 12.550 hybrid contribution -0.870 -0.962 1.696 2.135 sum -8.758 7.833 -2.538 12.021 Atomic orbital electron populations 1.23748 0.95975 1.01244 1.04239 1.23057 0.95608 0.99353 0.97042 1.20655 0.97092 0.94833 0.98582 1.23420 0.93627 0.93824 0.97778 0.91182 1.23249 0.96936 0.96251 1.01815 1.23558 0.98649 0.91670 0.98622 1.68970 1.04084 1.03248 1.41220 1.23569 1.02338 0.94487 0.92785 1.19308 0.88979 0.90991 0.82915 0.92837 1.86560 1.47865 1.60770 1.40564 1.21665 0.97257 1.18549 1.23853 0.92774 1.25030 0.94988 0.97093 0.95538 1.70083 1.01339 1.37488 1.40527 0.86680 0.77640 0.82267 0.81835 1.20486 1.21078 1.19889 0.88904 0.89142 0.86887 0.91833 0.90374 0.91429 0.89284 0.91665 0.89922 0.91679 0.94902 0.81438 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.64 14.32 29.02 0.42 -2.22 16 2 C -0.13 -1.85 9.17 -36.02 -0.33 -2.18 16 3 C -0.07 -0.98 5.72 -27.88 -0.16 -1.14 16 4 C 0.02 0.35 3.05 -71.43 -0.22 0.13 16 5 H 0.07 1.07 7.63 -51.93 -0.40 0.67 16 6 C -0.14 -1.95 8.01 -26.20 -0.21 -2.16 16 7 C 0.00 0.07 6.53 -7.55 -0.05 0.02 16 8 N -0.45 -8.39 6.04 -236.50 -1.43 -9.81 16 9 C 0.00 -0.07 4.41 -3.83 -0.02 -0.09 16 10 C 0.24 6.09 2.80 -27.89 -0.08 6.02 16 11 H 0.05 1.52 7.26 -51.93 -0.38 1.14 16 12 O -0.56 -14.87 12.66 -35.23 -0.45 -15.31 16 13 C -0.57 -16.02 8.76 -34.44 -0.30 -16.32 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 16 N -0.86 -25.76 12.84 55.43 0.71 -25.05 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H 0.09 1.07 8.06 -52.49 -0.42 0.64 16 22 H 0.09 0.98 7.84 -52.49 -0.41 0.56 16 23 H 0.11 1.78 7.08 -52.49 -0.37 1.41 16 24 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 25 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.07 1.14 7.84 -51.93 -0.41 0.73 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.06 1.36 7.08 -51.93 -0.37 0.99 16 31 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 32 H 0.34 8.26 9.04 45.56 0.41 8.67 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -30.44 276.23 -7.43 -37.87 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.36 Total: 7.57 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -1.04 Total: -15.78 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.72 Total: -34.87 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.45 Total: -15.31 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.44 -7.43 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934462061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.865 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds