Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99840 * 2 1 4 4 C 1.52996 * 109.47111 * 124.99884 * 3 2 1 5 5 H 1.09001 * 112.79001 * 294.19001 * 4 3 2 6 6 C 1.53517 * 113.47689 * 163.38103 * 4 3 2 7 7 C 1.53508 * 83.57588 * 219.21111 * 6 4 3 8 8 N 1.47479 * 87.93651 * 26.02216 * 7 6 4 9 9 C 1.46897 * 111.00198 * 221.29837 * 8 7 6 10 10 C 1.52993 * 109.47250 * 294.24471 * 9 8 7 11 11 H 1.08998 * 109.47267 * 56.09710 * 10 9 8 12 12 O 1.42900 * 109.47190 * 296.10095 * 10 9 8 13 13 C 1.50697 * 109.47484 * 176.09851 * 10 9 8 14 14 H 1.08001 * 119.99501 * 0.02562 * 13 10 9 15 15 C 1.37870 * 120.00320 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00395 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00333 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47395 * 89.99519 * 17 15 13 19 19 H 1.48500 * 109.47379 * 209.99830 * 17 15 13 20 20 H 1.48504 * 109.47023 * 329.99734 * 17 15 13 21 21 H 1.08000 * 119.99604 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00663 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00663 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.46596 * 4.99576 * 3 2 1 25 25 H 1.09000 * 109.46752 * 245.00102 * 3 2 1 26 26 H 1.08995 * 114.17216 * 105.55778 * 6 4 3 27 27 H 1.09005 * 114.16639 * 332.85439 * 6 4 3 28 28 H 1.08998 * 113.47563 * 271.25595 * 7 6 4 29 29 H 1.08995 * 113.47859 * 140.78944 * 7 6 4 30 30 H 1.08997 * 109.46853 * 174.24524 * 9 8 7 31 31 H 1.08994 * 109.47358 * 54.25201 * 9 8 7 32 32 H 0.96697 * 113.99921 * 299.99684 * 12 10 9 33 33 H 0.96996 * 120.00524 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 1 2.5268 1.3408 2.1459 6 6 4.1216 2.4101 1.0545 7 6 5.0261 1.3231 1.6518 8 7 4.1030 0.3204 1.0883 9 6 3.8731 -0.7762 2.0383 10 6 5.1760 -1.5498 2.2493 11 1 5.9560 -0.8644 2.5808 12 8 5.5710 -2.1618 1.0198 13 6 4.9648 -2.6141 3.2951 14 1 3.9976 -2.7275 3.7622 15 6 6.0060 -3.4428 3.6555 16 7 7.1836 -3.3050 3.0863 17 14 5.7439 -4.7625 4.9513 18 1 5.2988 -6.0184 4.2959 19 1 7.0178 -5.0061 5.6745 20 1 4.7066 -4.3120 5.9138 21 1 -0.5399 -0.9353 -0.0004 22 1 -0.5401 0.9352 0.0004 23 1 1.8500 -0.9352 -0.0004 24 1 1.3584 2.1316 0.0895 25 1 2.6212 1.4027 -0.9314 26 1 3.9727 3.2731 1.7034 27 1 4.3657 2.6787 0.0267 28 1 5.0493 1.3280 2.7415 29 1 6.0214 1.2945 1.2085 30 1 3.1121 -1.4477 1.6408 31 1 3.5351 -0.3672 2.9904 32 1 4.9230 -2.7857 0.6651 33 1 7.9160 -3.8882 3.3395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934462061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = -26.275174 kcal Electronic energy + Delta-G solvation = -14256.485848 eV Core-core repulsion = 11896.626361 eV Total energy + Delta-G solvation = -2359.859486 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20026 -37.55863 -35.44200 -34.27144 -32.13260 -29.37030 -28.73808 -25.59411 -24.34699 -22.34200 -20.72944 -20.36341 -19.11226 -17.08898 -16.70432 -16.57573 -16.12828 -15.79202 -15.29147 -15.20579 -14.49247 -13.80071 -13.42431 -13.27027 -13.11367 -12.87472 -12.82044 -12.79048 -12.30566 -12.11220 -11.74841 -11.72209 -11.20610 -10.97902 -10.74449 -10.21404 -10.05308 -9.63402 -8.16662 -6.43717 1.37786 1.38285 1.46520 1.49380 2.35723 3.08417 3.16619 3.55428 3.90369 4.16429 4.19774 4.23707 4.39230 4.42818 4.51008 4.57245 4.64500 4.82885 4.84177 4.98992 5.01954 5.10244 5.18840 5.31135 5.46941 5.60245 5.74473 5.82771 5.96889 6.03225 6.25836 6.69771 7.30452 7.55108 8.87918 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037224 B = 0.008007 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.017437 B = 3496.307216 C = 3899.549040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.067 4.067 4 C 0.024 3.976 5 H 0.071 0.929 6 C -0.119 4.119 7 C -0.009 4.009 8 N -0.472 5.472 9 C 0.019 3.981 10 C 0.236 3.764 11 H 0.020 0.980 12 O -0.573 6.573 13 C -0.591 4.591 14 H 0.057 0.943 15 C 0.025 3.975 16 N -0.900 5.900 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.265 1.265 21 H 0.097 0.903 22 H 0.113 0.887 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.352 0.648 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 9.639 -3.484 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.178 4.178 3 C -0.104 4.104 4 C -0.085 4.085 5 H 0.089 0.911 6 C -0.156 4.156 7 C -0.138 4.138 8 N -0.194 5.194 9 C -0.110 4.110 10 C 0.178 3.822 11 H 0.038 0.962 12 O -0.376 6.376 13 C -0.629 4.629 14 H 0.076 0.924 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.116 0.884 22 H 0.131 0.869 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.196 0.804 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.765 9.600 -4.020 14.272 hybrid contribution -0.316 -1.187 1.587 2.007 sum -10.081 8.413 -2.434 13.354 Atomic orbital electron populations 1.23960 0.95345 1.02552 1.01379 1.22977 0.96332 0.98782 0.99741 1.20629 0.97029 0.95332 0.97440 1.23501 0.93611 0.92640 0.98754 0.91145 1.23186 0.93911 0.95814 1.02725 1.23624 0.98448 0.93468 0.98243 1.68953 1.06425 1.03696 1.40357 1.23141 0.99342 0.95094 0.93439 1.19175 0.90147 0.90572 0.82284 0.96233 1.86500 1.48852 1.61319 1.40905 1.22051 0.97425 1.19095 1.24326 0.92443 1.25929 0.94552 0.99511 0.97731 1.70224 1.02328 1.38775 1.42364 0.85534 0.77774 0.79151 0.78980 1.19708 1.20657 1.18887 0.88446 0.86932 0.89588 0.89012 0.90650 0.88548 0.88039 0.92534 0.91665 0.91708 0.95128 0.80400 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.28 14.32 67.79 0.97 -3.31 16 2 C -0.16 -4.23 9.17 25.66 0.24 -4.00 16 3 C -0.07 -1.60 5.72 29.85 0.17 -1.43 16 4 C 0.02 0.68 3.05 42.19 0.13 0.81 16 5 H 0.07 2.00 7.63 -2.39 -0.02 1.98 16 6 C -0.12 -2.91 8.01 30.94 0.25 -2.67 16 7 C -0.01 -0.30 6.53 83.57 0.55 0.25 16 8 N -0.47 -17.49 6.04 -902.16 -5.45 -22.94 16 9 C 0.02 0.80 4.41 86.30 0.38 1.18 16 10 C 0.24 12.57 2.80 29.84 0.08 12.66 16 11 H 0.02 1.18 7.26 -2.39 -0.02 1.16 16 12 O -0.57 -31.59 12.66 -148.98 -1.89 -33.48 16 13 C -0.59 -33.41 8.76 25.60 0.22 -33.19 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.03 1.44 5.40 84.65 0.46 1.90 16 16 N -0.90 -55.12 12.84 21.45 0.28 -54.84 16 17 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H 0.10 2.02 8.06 -2.91 -0.02 1.99 16 22 H 0.11 1.97 7.84 -2.91 -0.02 1.95 16 23 H 0.09 2.73 7.08 -2.91 -0.02 2.71 16 24 H 0.09 1.69 7.79 -2.39 -0.02 1.67 16 25 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 2.27 8.07 -2.38 -0.02 2.25 16 28 H 0.06 2.01 7.84 -2.39 -0.02 1.99 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.75 7.08 -2.39 -0.02 2.73 16 31 H 0.03 1.30 7.56 -2.39 -0.02 1.28 16 32 H 0.35 17.47 9.04 -74.06 -0.67 16.80 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -65.94 276.23 -1.19 -67.12 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.41 Total: 25.88 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.44 Total: -27.79 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -5.18 Total: -77.78 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.89 Total: -33.48 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.94 -1.19 -67.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934462061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.848 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds