Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 119.99762 * 2 1 4 4 C 1.52995 * 109.47368 * 125.00227 * 3 2 1 5 5 H 1.09005 * 112.79130 * 65.80533 * 4 3 2 6 6 C 1.53510 * 113.48281 * 196.61827 * 4 3 2 7 7 C 1.53510 * 83.57994 * 140.78809 * 6 4 3 8 8 N 1.47483 * 113.47534 * 295.00232 * 4 3 2 9 9 C 1.46893 * 111.00377 * 106.52997 * 8 4 3 10 10 C 1.53004 * 109.47285 * 187.50101 * 9 8 4 11 11 H 1.09000 * 109.47211 * 59.98987 * 10 9 8 12 12 O 1.42898 * 109.46678 * 299.99467 * 10 9 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 H 1.08003 * 120.00596 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00468 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99789 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47710 * 5.00106 * 3 2 1 25 25 H 1.08998 * 109.47219 * 245.00059 * 3 2 1 26 26 H 1.09010 * 114.16759 * 27.14080 * 6 4 3 27 27 H 1.09000 * 114.17318 * 254.43683 * 6 4 3 28 28 H 1.09004 * 113.47679 * 219.21063 * 7 6 4 29 29 H 1.08997 * 113.47780 * 88.74434 * 7 6 4 30 30 H 1.09000 * 109.47823 * 67.49463 * 9 8 4 31 31 H 1.09007 * 109.47029 * 307.49231 * 9 8 4 32 32 H 0.96702 * 114.00549 * 300.00185 * 12 10 9 33 33 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 1 3.8275 0.5898 1.0943 6 6 3.5502 2.7399 1.5165 7 6 3.3987 2.2625 2.9676 8 7 2.3635 1.3245 2.4946 9 6 2.5009 0.0159 3.1477 10 6 1.6404 -0.0159 4.4123 11 1 0.5965 0.1494 4.1457 12 8 2.0716 1.0109 5.3078 13 6 1.7809 -1.3586 5.0820 14 1 2.4198 -2.1139 4.6486 15 6 1.0890 -1.6250 6.2444 16 7 0.3108 -0.7054 6.7719 17 14 1.2572 -3.2921 7.0702 18 1 2.1852 -4.1431 6.2830 19 1 1.7937 -3.1125 8.4432 20 1 -0.0742 -3.9461 7.1407 21 1 -0.5401 0.9353 0.0004 22 1 -0.5401 -0.9353 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3585 2.1317 0.0896 25 1 2.6212 1.4026 -0.9314 26 1 2.8683 3.5432 1.2374 27 1 4.5809 2.9219 1.2119 28 1 3.0148 3.0303 3.6394 29 1 4.2882 1.7672 3.3569 30 1 3.5448 -0.1494 3.4143 31 1 2.1720 -0.7673 2.4647 32 1 2.9934 0.9271 5.5877 33 1 -0.1762 -0.8929 7.5895 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934462064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -2.078276 kcal Electronic energy + Delta-G solvation = -14343.613123 eV Core-core repulsion = 11984.802893 eV Total energy + Delta-G solvation = -2358.810230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.80771 -35.55104 -34.20473 -32.06253 -30.44543 -28.22623 -26.80427 -23.72494 -23.03518 -20.47279 -19.45923 -19.28370 -16.97582 -15.36407 -15.20771 -14.89227 -14.54271 -14.12326 -13.70627 -13.31172 -13.18906 -12.57992 -12.05086 -11.55117 -11.33112 -11.09684 -11.02740 -10.92252 -10.85655 -10.54335 -10.29764 -10.19104 -9.89679 -9.09155 -8.82992 -8.53986 -8.29055 -7.88675 -5.96307 -4.14775 2.65347 3.27982 3.36037 3.39189 4.36822 4.54002 4.75935 5.05106 5.30489 5.40537 5.49783 5.55633 5.69547 5.71915 5.83589 5.93466 6.05561 6.14431 6.20974 6.26506 6.32458 6.50756 6.52613 6.91981 6.94662 7.06983 7.12670 7.64058 7.80817 8.00496 8.25551 8.89278 9.46133 9.63866 11.07741 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035400 B = 0.008598 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.779477 B = 3255.628786 C = 3706.122769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C -0.072 4.072 4 C 0.023 3.977 5 H 0.068 0.932 6 C -0.147 4.147 7 C 0.010 3.990 8 N -0.451 5.451 9 C -0.001 4.001 10 C 0.241 3.759 11 H 0.060 0.940 12 O -0.559 6.559 13 C -0.573 4.573 14 H 0.053 0.947 15 C 0.079 3.921 16 N -0.857 5.857 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.337 0.663 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 3.761 -11.153 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C -0.110 4.110 4 C -0.087 4.087 5 H 0.086 0.914 6 C -0.184 4.184 7 C -0.120 4.120 8 N -0.173 5.173 9 C -0.129 4.129 10 C 0.183 3.817 11 H 0.078 0.922 12 O -0.361 6.361 13 C -0.611 4.611 14 H 0.071 0.929 15 C -0.127 4.127 16 N -0.493 5.493 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.972 4.140 -11.015 12.419 hybrid contribution 1.451 -1.739 0.650 2.357 sum 5.424 2.401 -10.364 11.941 Atomic orbital electron populations 1.23718 0.95951 1.01436 1.01316 1.22736 0.96076 0.97989 0.99724 1.20624 0.97797 0.95984 0.96563 1.23364 0.95453 0.96654 0.93228 0.91383 1.23265 1.00672 0.96946 0.97555 1.23616 0.94576 0.97663 0.96104 1.68937 1.37955 1.09255 1.01189 1.23552 0.99326 0.90256 0.99810 1.19276 0.93620 0.86219 0.82578 0.92212 1.86605 1.29644 1.52498 1.67312 1.21705 1.29412 1.00012 1.09998 0.92865 1.25028 0.94334 0.96323 0.96965 1.70100 1.27076 1.32607 1.19534 0.86649 0.77955 0.84497 0.79454 1.19802 1.20900 1.20871 0.88812 0.88957 0.88153 0.91033 0.91437 0.89347 0.91561 0.89692 0.92194 0.95338 0.91610 0.82042 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 14.32 29.02 0.42 -2.32 16 2 C -0.15 -2.15 8.56 -36.03 -0.31 -2.46 16 3 C -0.07 -0.97 5.71 -27.89 -0.16 -1.13 16 4 C 0.02 0.34 3.05 -71.43 -0.22 0.12 16 5 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 6 C -0.15 -1.93 8.01 -26.20 -0.21 -2.14 16 7 C 0.01 0.16 6.79 -7.53 -0.05 0.10 16 8 N -0.45 -8.45 5.92 -236.47 -1.40 -9.85 16 9 C 0.00 -0.02 4.43 -3.83 -0.02 -0.04 16 10 C 0.24 6.33 3.09 -27.88 -0.09 6.24 16 11 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 12 O -0.56 -14.73 11.75 -35.23 -0.41 -15.15 16 13 C -0.57 -16.11 8.76 -34.44 -0.30 -16.41 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 16 N -0.86 -25.95 12.84 55.43 0.71 -25.24 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H 0.09 1.32 7.84 -52.48 -0.41 0.91 16 22 H 0.09 1.28 8.06 -52.49 -0.42 0.85 16 23 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 24 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.12 8.07 -51.92 -0.42 0.70 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.06 0.95 7.44 -51.93 -0.39 0.56 16 30 H 0.03 0.59 7.35 -51.93 -0.38 0.21 16 31 H 0.07 1.41 7.33 -51.93 -0.38 1.03 16 32 H 0.34 7.95 9.04 45.56 0.41 8.36 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 276.95 15.07 4.17 4.17 Total: -1.00 -30.91 276.95 -7.44 -38.35 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.46 Total: 7.08 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.03 Total: -15.86 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.69 Total: -35.09 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.41 Total: -15.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.91 -7.44 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934462064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds