Wall clock time and date at job start Mon Mar 30 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 110.01875 * 2 1 4 4 C 1.46906 * 110.99888 * 59.30413 * 3 2 1 5 5 C 1.52999 * 109.46897 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.54261 * 110.03645 * 121.39713 * 2 1 3 16 16 C 1.54966 * 104.16279 * 95.75183 * 15 2 1 17 17 C 1.54888 * 102.77704 * 37.88792 * 16 15 2 18 18 C 1.53884 * 110.02913 * 238.61310 * 2 1 3 19 19 H 1.09000 * 109.47466 * 60.69765 * 1 2 3 20 20 H 1.08994 * 109.47067 * 180.70106 * 1 2 3 21 21 H 1.09001 * 109.46727 * 300.69818 * 1 2 3 22 22 H 1.00896 * 111.00084 * 183.25822 * 3 2 1 23 23 H 1.09000 * 109.47033 * 59.99886 * 4 3 2 24 24 H 1.09001 * 109.46544 * 299.99942 * 4 3 2 25 25 H 1.09000 * 109.47486 * 60.00024 * 5 4 3 26 26 H 1.09001 * 109.47362 * 299.99301 * 5 4 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 28 28 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 29 29 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 30 30 H 1.08997 * 110.48725 * 214.40043 * 15 2 1 31 31 H 1.09004 * 110.48490 * 337.04157 * 15 2 1 32 32 H 1.09010 * 110.71850 * 279.57605 * 16 15 2 33 33 H 1.08997 * 110.92632 * 156.30030 * 16 15 2 34 34 H 1.08994 * 110.48519 * 203.40800 * 17 16 15 35 35 H 1.08999 * 110.48367 * 80.76404 * 17 16 15 36 36 H 1.08994 * 110.02953 * 359.94790 * 18 2 1 37 37 H 1.08992 * 110.03048 * 121.33416 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0329 1.3802 0.0000 4 6 1.5553 2.1145 1.1793 5 6 2.0979 3.5446 1.1439 6 6 1.5999 4.3095 2.3719 7 6 2.1349 5.7179 2.3373 8 1 2.7672 6.0356 1.5214 9 6 1.8180 6.6008 3.3479 10 7 1.0485 6.2138 4.3418 11 14 2.4805 8.3467 3.3047 12 1 3.3149 8.5297 2.0899 13 1 1.3471 9.3058 3.2763 14 1 3.3068 8.5926 4.5139 15 6 2.0585 -0.7550 1.2370 16 6 2.3299 -2.1898 0.7182 17 6 2.8884 -1.9396 -0.7046 18 6 2.0571 -0.7530 -1.2342 19 1 -0.3634 0.5029 -0.8962 20 1 -0.3633 -1.0275 0.0126 21 1 -0.3633 0.5247 0.8837 22 1 3.0403 1.3980 -0.0535 23 1 1.9037 1.6156 2.0837 24 1 0.4656 2.1395 1.1749 25 1 1.7492 4.0433 0.2396 26 1 3.1876 3.5200 1.1481 27 1 0.5103 4.3341 2.3673 28 1 1.9483 3.8110 3.2764 29 1 0.8252 6.8350 5.0525 30 1 2.9807 -0.2990 1.5971 31 1 1.3059 -0.7696 2.0254 32 1 1.4052 -2.7654 0.6745 33 1 3.0688 -2.6953 1.3399 34 1 2.7414 -2.8186 -1.3321 35 1 3.9448 -1.6749 -0.6586 36 1 1.2228 -1.1191 -1.8325 37 1 2.6852 -0.0940 -1.8335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:34 Heat of formation + Delta-G solvation = -52.381572 kcal Electronic energy + Delta-G solvation = -14131.649566 eV Core-core repulsion = 11906.491116 eV Total energy + Delta-G solvation = -2225.158450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27546 -36.68682 -34.98708 -32.90127 -30.42257 -29.67257 -27.97634 -25.87389 -24.04647 -22.13308 -21.22308 -19.85722 -18.48314 -17.04489 -16.69613 -16.46277 -15.98127 -15.12859 -14.80928 -14.45671 -14.32695 -13.90063 -13.58954 -13.33899 -13.00357 -12.76434 -12.58233 -12.41837 -12.17022 -12.01103 -11.94742 -11.78712 -11.57997 -11.43083 -11.36244 -11.26148 -11.02287 -10.56763 -9.26814 -8.20980 -6.32286 1.39543 1.40028 1.53812 2.40636 3.12045 3.22651 3.66687 3.76955 4.01190 4.23452 4.38106 4.41605 4.46537 4.54850 4.56837 4.72758 4.78588 4.84288 4.94370 4.95990 4.99371 5.08722 5.16864 5.19536 5.22451 5.22962 5.36392 5.43240 5.49117 5.52434 5.74092 5.84840 6.17389 6.29398 6.55312 6.84763 7.37159 8.91330 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066651 B = 0.005082 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.994867 B = 5508.304916 C = 5576.027437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.103 3.897 3 N -0.681 5.681 4 C 0.072 3.928 5 C -0.092 4.092 6 C 0.026 3.974 7 C -0.543 4.543 8 H 0.059 0.941 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.154 4.154 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.111 4.111 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.041 0.959 22 H 0.341 0.659 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.048 0.952 27 H -0.010 1.010 28 H -0.011 1.011 29 H 0.264 0.736 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -16.253 -9.454 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.057 4.057 5 C -0.130 4.130 6 C -0.012 4.012 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.193 4.193 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.149 4.149 19 H 0.076 0.924 20 H 0.093 0.907 21 H 0.060 0.940 22 H 0.160 0.840 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.740 -15.953 -9.733 18.768 hybrid contribution 0.588 0.753 1.258 1.580 sum 2.328 -15.200 -8.475 17.558 Atomic orbital electron populations 1.21907 0.93836 1.02013 1.01567 1.21746 0.95427 0.86819 0.94762 1.60707 1.15466 1.13868 1.41141 1.21820 0.99678 0.93391 0.90809 1.21384 0.99291 0.94162 0.98212 1.18967 0.94750 0.94354 0.93127 1.21729 1.30700 0.97893 1.07767 0.92274 1.26009 0.95347 1.03605 0.94952 1.70110 1.38069 1.37263 1.12061 0.85368 0.78301 0.78768 0.78420 1.18597 1.20252 1.20235 1.23135 1.00277 0.97653 0.98266 1.22443 1.01339 0.95176 0.96524 1.22366 0.99259 0.98103 0.96124 1.22213 1.00125 0.96515 0.96030 0.92371 0.90679 0.94025 0.84023 0.96143 0.92056 0.93038 0.93293 0.99156 0.99232 0.92747 0.92796 0.92513 0.90724 0.91156 0.90062 0.91711 0.90495 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 7.90 71.98 0.57 -2.71 16 2 C 0.10 2.50 0.86 4.25 0.00 2.51 16 3 N -0.68 -20.15 5.96 -466.58 -2.78 -22.93 16 4 C 0.07 2.61 5.03 86.30 0.43 3.05 16 5 C -0.09 -4.02 5.41 30.60 0.17 -3.85 16 6 C 0.03 1.41 4.97 29.85 0.15 1.56 16 7 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 10 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 11 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 C -0.15 -3.59 4.80 31.69 0.15 -3.44 16 16 C -0.12 -2.05 6.91 31.91 0.22 -1.83 16 17 C -0.12 -1.95 6.83 31.67 0.22 -1.74 16 18 C -0.11 -2.16 6.19 31.32 0.19 -1.96 16 19 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.04 1.14 6.41 -2.39 -0.02 1.12 16 22 H 0.34 9.52 8.67 -89.70 -0.78 8.74 16 23 H 0.02 0.75 7.04 -2.39 -0.02 0.74 16 24 H 0.06 2.32 6.32 -2.39 -0.02 2.30 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.05 1.37 7.82 -2.39 -0.02 1.35 16 31 H 0.06 1.41 7.84 -2.39 -0.02 1.39 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.35 7.67 -2.39 -0.02 1.34 16 37 H 0.07 1.40 7.90 -2.39 -0.02 1.38 16 Total: -1.00 -64.16 290.72 2.56 -61.60 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.23 Total: 11.80 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 2.80 Total: -39.80 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.50 Total: -80.80 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.16 2.56 -61.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.218 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds