Wall clock time and date at job start Mon Mar 30 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47185 * 120.00005 * 2 1 3 5 5 C 1.53003 * 109.47459 * 175.00145 * 4 2 1 6 6 H 1.09000 * 109.52270 * 55.12432 * 5 4 2 7 7 C 1.53119 * 109.51577 * 294.99813 * 5 4 2 8 8 C 1.53044 * 109.27589 * 182.43890 * 7 5 4 9 9 N 1.46847 * 109.51335 * 59.18419 * 8 7 5 10 10 C 1.46847 * 111.20163 * 298.24410 * 9 8 7 11 11 C 1.53041 * 109.51486 * 61.75514 * 10 9 8 12 12 H 1.08996 * 109.50165 * 60.75338 * 11 10 9 13 13 C 1.50697 * 109.53413 * 180.85987 * 11 10 9 14 14 H 1.07998 * 120.00184 * 119.82774 * 13 11 10 15 15 C 1.37879 * 119.99895 * 299.81856 * 13 11 10 16 16 N 1.31513 * 119.99845 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99725 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47060 * 60.00575 * 17 15 13 19 19 H 1.48503 * 109.46871 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47283 * 300.00341 * 17 15 13 21 21 H 1.09007 * 109.46770 * 300.00170 * 1 2 3 22 22 H 1.09000 * 109.47156 * 59.99621 * 1 2 3 23 23 H 1.08994 * 109.47362 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47252 * 239.99614 * 2 1 3 25 25 H 1.09002 * 109.46894 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47035 * 299.99834 * 3 2 1 27 27 H 1.08997 * 109.47285 * 60.00205 * 3 2 1 28 28 H 1.08999 * 109.47321 * 54.99705 * 4 2 1 29 29 H 1.08999 * 109.47222 * 294.99795 * 4 2 1 30 30 H 1.09000 * 109.50507 * 62.50555 * 7 5 4 31 31 H 1.08996 * 109.50916 * 302.37872 * 7 5 4 32 32 H 1.09002 * 109.46396 * 179.19729 * 8 7 5 33 33 H 1.08994 * 109.46485 * 299.17654 * 8 7 5 34 34 H 1.00902 * 110.99979 * 62.35429 * 9 8 7 35 35 H 1.09005 * 109.46836 * 301.74653 * 10 9 8 36 36 H 1.08995 * 109.45748 * 181.76188 * 10 9 8 37 37 H 0.97000 * 119.99610 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9964 0.1610 1.0550 7 6 3.9665 -1.7257 0.0121 8 6 5.4889 -1.8812 -0.0075 9 7 5.9377 -2.4750 1.2583 10 6 5.6050 -1.6106 2.3979 11 6 4.0861 -1.4471 2.4893 12 1 3.6236 -2.4223 2.6410 13 6 3.7454 -0.5431 3.6458 14 1 3.2104 0.3787 3.4713 15 6 4.1164 -0.8929 4.9268 16 7 4.7680 -2.0153 5.1393 17 14 3.6933 0.2274 6.3605 18 1 2.2194 0.3879 6.4451 19 1 4.1998 -0.3704 7.6220 20 1 4.3248 1.5555 6.1541 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6053 -1.7198 1.2952 29 1 1.7517 -0.1583 2.1370 30 1 3.6352 -1.2706 -0.9212 31 1 3.5021 -2.7054 0.1249 32 1 5.7772 -2.5293 -0.8351 33 1 5.9522 -0.9028 -0.1340 34 1 5.5521 -3.3994 1.3808 35 1 6.0678 -0.6334 2.2599 36 1 5.9776 -2.0624 3.3172 37 1 5.0294 -2.2612 6.0405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:03 Heat of formation + Delta-G solvation = -52.687984 kcal Electronic energy + Delta-G solvation = -15024.075453 eV Core-core repulsion = 12798.903716 eV Total energy + Delta-G solvation = -2225.171737 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10014 -36.96655 -34.98468 -32.67669 -31.26703 -27.97493 -27.64600 -26.42264 -23.41122 -22.89565 -20.99577 -20.24003 -18.39285 -16.81544 -16.32932 -16.12199 -15.28232 -15.09349 -14.81015 -14.51198 -14.21834 -13.86032 -13.54502 -13.06023 -12.86929 -12.70625 -12.60306 -12.50151 -12.26509 -12.10833 -12.05495 -11.72097 -11.53599 -11.41868 -11.15062 -10.96887 -10.60042 -10.34792 -8.97018 -8.07359 -6.17298 1.40376 1.40951 1.48288 2.43323 3.19686 3.72012 3.95508 4.00994 4.16498 4.26403 4.43422 4.46314 4.69061 4.74967 4.82528 4.83826 4.90245 4.94390 5.01076 5.04072 5.17653 5.18976 5.24752 5.32054 5.33644 5.48423 5.50029 5.56080 5.66021 5.70071 5.97705 6.05002 6.21738 6.53872 6.69255 6.95385 7.48537 8.97232 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.012335 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.227128 B = 2269.401673 C = 3193.779732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.093 4.093 5 C -0.072 4.072 6 H 0.051 0.949 7 C -0.142 4.142 8 C 0.058 3.942 9 N -0.697 5.697 10 C 0.073 3.927 11 C 0.026 3.974 12 H -0.011 1.011 13 C -0.519 4.519 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.946 3.054 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.332 0.668 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 2.807 -10.662 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.131 4.131 5 C -0.091 4.091 6 H 0.069 0.931 7 C -0.181 4.181 8 C -0.071 4.071 9 N -0.325 5.325 10 C -0.056 4.056 11 C 0.006 3.994 12 H 0.007 0.993 13 C -0.557 4.557 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.772 3.228 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.198 1.198 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.852 2.951 -10.576 11.636 hybrid contribution -1.063 0.247 1.455 1.819 sum -4.915 3.198 -9.121 10.843 Atomic orbital electron populations 1.21810 0.94784 1.01619 1.01772 1.21157 0.95972 0.96301 0.97824 1.21832 1.00807 0.95953 1.01434 1.21495 0.95135 0.98974 0.97477 1.21139 0.95337 0.97942 0.94668 0.93060 1.22297 0.97639 0.99438 0.98729 1.22046 0.93036 0.99923 0.92125 1.60819 1.62856 1.05846 1.02958 1.21887 0.96473 0.94718 0.92547 1.19237 0.93369 0.94322 0.92489 0.99332 1.21422 1.35564 1.06368 0.92396 0.93092 1.25690 0.95277 0.96391 1.01202 1.69983 1.40313 1.23917 1.21525 0.85793 0.78520 0.79411 0.79031 1.19943 1.21143 1.19793 0.93598 0.91282 0.92888 0.90538 0.93339 0.91318 0.93925 0.94186 0.93845 0.90212 0.93200 0.89502 0.92114 0.85130 0.95070 0.91334 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.19 71.98 0.66 -2.81 16 2 C -0.09 -2.65 2.78 -10.80 -0.03 -2.68 16 3 C -0.14 -3.87 8.95 71.98 0.64 -3.23 16 4 C -0.09 -3.43 4.01 30.59 0.12 -3.30 16 5 C -0.07 -2.86 1.57 -10.71 -0.02 -2.88 16 6 H 0.05 2.11 6.35 -2.39 -0.02 2.09 16 7 C -0.14 -4.64 5.06 30.65 0.16 -4.49 16 8 C 0.06 1.92 6.55 86.33 0.57 2.49 16 9 N -0.70 -28.02 6.87 -513.99 -3.53 -31.55 16 10 C 0.07 3.56 5.61 86.33 0.48 4.04 16 11 C 0.03 1.27 1.75 -11.49 -0.02 1.25 16 12 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 13 C -0.52 -28.30 7.79 25.60 0.20 -28.10 16 14 H 0.05 2.76 6.90 -2.91 -0.02 2.74 16 15 C 0.01 0.71 5.31 84.66 0.45 1.16 16 16 N -0.92 -53.20 11.34 21.45 0.24 -52.96 16 17 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.97 6.40 -2.39 -0.02 1.96 16 25 H 0.05 1.40 6.47 -2.39 -0.02 1.38 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.81 6.66 -2.39 -0.02 1.80 16 30 H 0.08 2.18 6.59 -2.39 -0.02 2.17 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.33 13.07 8.86 -89.69 -0.79 12.28 16 35 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 3.81 6.11 -2.39 -0.01 3.79 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -58.35 279.86 2.19 -56.17 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.23 Total: 20.80 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.22 Total: -38.54 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.29 Total: -84.50 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -58.35 2.19 -56.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.480 kcal (2) G-P(sol) polarization free energy of solvation -58.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds