Wall clock time and date at job start Mon Mar 30 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48538 * 111.00085 * 2 1 4 4 C 1.54933 * 103.22559 * 159.72009 * 3 2 1 5 5 C 1.54604 * 102.92331 * 322.58717 * 4 3 2 6 6 C 1.50699 * 110.30478 * 263.03902 * 5 4 3 7 7 H 1.07993 * 120.00332 * 331.02321 * 6 5 4 8 8 C 1.37873 * 119.99439 * 151.02426 * 6 5 4 9 9 N 1.31514 * 120.00454 * 10.21081 * 8 6 5 10 10 Si 1.86803 * 119.99911 * 190.21530 * 8 6 5 11 11 H 1.48496 * 109.47393 * 59.99584 * 10 8 6 12 12 H 1.48494 * 109.47518 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46977 * 299.99965 * 10 8 6 14 14 C 1.53002 * 110.30879 * 140.87195 * 5 4 3 15 15 C 1.53001 * 109.47114 * 302.83207 * 14 5 4 16 16 C 1.53006 * 109.47047 * 62.82944 * 14 5 4 17 17 C 1.52998 * 109.47041 * 182.82738 * 14 5 4 18 18 C 1.47902 * 110.99943 * 117.39808 * 2 1 3 19 19 H 1.09001 * 109.47069 * 302.60354 * 1 2 3 20 20 H 1.08999 * 109.47273 * 62.60319 * 1 2 3 21 21 H 1.08992 * 109.47593 * 182.60534 * 1 2 3 22 22 H 1.08995 * 110.66381 * 278.15186 * 3 2 1 23 23 H 1.08998 * 110.66384 * 41.28457 * 3 2 1 24 24 H 1.08996 * 110.72767 * 204.22276 * 4 3 2 25 25 H 1.08999 * 110.72410 * 80.94140 * 4 3 2 26 26 H 0.96998 * 120.00164 * 179.97438 * 9 8 6 27 27 H 1.08996 * 109.47197 * 60.00062 * 15 14 5 28 28 H 1.09001 * 109.46813 * 180.02562 * 15 14 5 29 29 H 1.09002 * 109.46677 * 300.00048 * 15 14 5 30 30 H 1.09000 * 109.47035 * 59.99899 * 16 14 5 31 31 H 1.08995 * 109.46960 * 179.97438 * 16 14 5 32 32 H 1.08997 * 109.47145 * 299.99524 * 16 14 5 33 33 H 1.09006 * 109.46820 * 60.00311 * 17 14 5 34 34 H 1.08995 * 109.47193 * 179.97438 * 17 14 5 35 35 H 1.09000 * 109.47292 * 300.00255 * 17 14 5 36 36 H 1.09006 * 109.91359 * 333.50495 * 18 2 1 37 37 H 1.09002 * 109.91830 * 94.80172 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2982 0.1052 1.5931 6 6 3.1812 0.7181 2.9649 7 1 3.6514 1.6675 3.1740 8 6 2.4740 0.0665 3.9528 9 7 2.0733 -1.1722 3.7669 10 14 2.0846 0.9433 5.5557 11 1 1.2733 2.1545 5.2730 12 1 1.3211 0.0321 6.4456 13 1 3.3504 1.3402 6.2230 14 6 4.4895 -0.8532 1.5382 15 6 4.5997 -1.4500 0.1337 16 6 5.7736 -0.0904 1.8704 17 6 4.2866 -1.9777 2.5557 18 6 1.9990 -0.6354 1.2259 19 1 -0.3633 0.5537 0.8657 20 1 -0.3634 0.4729 -0.9124 21 1 -0.3634 -1.0265 0.0467 22 1 2.0041 1.7976 -1.0095 23 1 1.4237 2.0205 0.6729 24 1 3.8123 2.1351 0.9715 25 1 4.1115 0.8835 -0.2787 26 1 1.5761 -1.6307 4.4621 27 1 4.7443 -0.6489 -0.5911 28 1 5.4482 -2.1332 0.0948 29 1 3.6849 -1.9934 -0.1029 30 1 5.6951 0.3348 2.8710 31 1 6.6222 -0.7733 1.8318 32 1 5.9182 0.7106 1.1455 33 1 3.3718 -2.5212 2.3190 34 1 5.1351 -2.6608 2.5164 35 1 4.2081 -1.5525 3.5563 36 1 1.2757 -0.5402 2.0359 37 1 2.2122 -1.6875 1.0365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:05 Heat of formation + Delta-G solvation = 6.550510 kcal Electronic energy + Delta-G solvation = -15848.357613 eV Core-core repulsion = 13625.754650 eV Total energy + Delta-G solvation = -2222.602963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88708 -35.11767 -32.47702 -30.29584 -27.38649 -26.71103 -25.72144 -24.91050 -23.55924 -20.18954 -19.88554 -17.52057 -15.79717 -14.98538 -14.64332 -14.04291 -13.35980 -13.26205 -12.95647 -12.69164 -12.03208 -11.84452 -11.53319 -11.21118 -11.15525 -10.77469 -10.68291 -10.53245 -10.41958 -10.30352 -10.19304 -10.00310 -9.77341 -9.69697 -8.95255 -8.72792 -8.52515 -8.26161 -7.25112 -5.95500 -4.03208 3.28468 3.34306 3.37650 4.40443 5.16204 5.24259 5.82906 5.94264 6.04179 6.15132 6.19256 6.28415 6.36603 6.39380 6.47428 6.57504 6.65391 6.76148 6.82516 6.87691 6.96496 7.08148 7.11619 7.27402 7.31226 7.35161 7.48141 7.61525 7.75342 7.93725 7.95000 8.03512 8.19296 8.25079 8.55567 8.97197 9.56011 10.99353 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.016983 C = 0.012903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.720398 B = 1648.331139 C = 2169.442092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.538 5.538 3 C 0.043 3.957 4 C -0.118 4.118 5 C 0.079 3.921 6 C -0.497 4.497 7 H 0.054 0.946 8 C 0.062 3.938 9 N -0.872 5.872 10 Si 0.882 3.118 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.049 4.049 15 C -0.140 4.140 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.058 3.942 19 H 0.020 0.980 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.258 0.742 27 H 0.044 0.956 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.035 0.965 33 H 0.057 0.943 34 H -0.002 1.002 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 1.091 -4.248 4.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.085 4.085 4 C -0.156 4.156 5 C 0.078 3.922 6 C -0.535 4.535 7 H 0.072 0.928 8 C -0.139 4.139 9 N -0.510 5.510 10 Si 0.710 3.290 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.049 4.049 15 C -0.197 4.197 16 C -0.182 4.182 17 C -0.163 4.163 18 C -0.068 4.068 19 H 0.038 0.962 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.017 0.983 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.797 0.635 -4.599 4.710 hybrid contribution -0.607 0.885 1.649 1.967 sum 0.190 1.521 -2.950 3.324 Atomic orbital electron populations 1.22346 0.90403 1.00677 0.99086 1.64828 1.06111 1.14390 1.40948 1.23018 0.96766 0.90578 0.98146 1.22720 0.94451 0.99864 0.98596 1.18901 0.90527 0.90110 0.92646 1.21085 1.32263 1.05393 0.94796 0.92801 1.24869 0.96457 0.94598 0.98004 1.70189 1.37909 1.09499 1.33443 0.86817 0.78538 0.79684 0.83932 1.20609 1.21427 1.20412 1.20618 0.95592 0.95950 0.92782 1.22018 0.99950 0.99500 0.98253 1.21723 0.96335 0.98588 1.01538 1.21780 0.97545 0.95871 1.01102 1.23126 0.98866 0.96795 0.87980 0.96166 0.93216 0.92493 0.92791 0.94660 0.92822 0.92669 0.93186 0.93721 0.95250 0.92851 0.92201 0.95539 0.94589 0.92365 0.98346 0.90646 0.90262 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.40 60.06 0.56 1.02 16 2 N -0.54 -11.38 5.55 -238.72 -1.33 -12.70 16 3 C 0.04 0.87 6.56 -1.90 -0.01 0.86 16 4 C -0.12 -2.49 4.94 -24.87 -0.12 -2.61 16 5 C 0.08 1.82 0.16 -154.30 -0.02 1.80 16 6 C -0.50 -12.59 6.40 -34.44 -0.22 -12.81 16 7 H 0.05 1.39 7.65 -52.49 -0.40 0.99 16 8 C 0.06 1.57 3.90 -17.82 -0.07 1.50 16 9 N -0.87 -22.46 7.52 55.43 0.42 -22.04 16 10 Si 0.88 20.43 29.55 -169.99 -5.02 15.41 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C -0.05 -1.06 0.32 -154.50 -0.05 -1.11 16 15 C -0.14 -2.78 7.92 37.16 0.29 -2.49 16 16 C -0.12 -2.54 8.03 37.16 0.30 -2.24 16 17 C -0.11 -2.44 6.74 37.16 0.25 -2.19 16 18 C 0.06 1.37 3.85 -2.76 -0.01 1.36 16 19 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.74 7.96 -51.93 -0.41 0.33 16 24 H 0.05 1.12 7.72 -51.93 -0.40 0.72 16 25 H 0.05 1.11 5.51 -51.93 -0.29 0.82 16 26 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.04 0.85 5.99 -51.93 -0.31 0.54 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.10 6.44 -51.93 -0.33 0.77 16 30 H 0.06 1.30 7.25 -51.93 -0.38 0.92 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.03 0.68 7.26 -51.93 -0.38 0.31 16 33 H 0.06 1.41 5.85 -51.93 -0.30 1.11 16 34 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 35 H 0.07 1.91 5.63 -51.93 -0.29 1.61 16 36 H 0.08 2.08 5.04 -51.93 -0.26 1.82 16 37 H 0.06 1.41 5.02 -51.93 -0.26 1.14 16 LS Contribution 264.63 15.07 3.99 3.99 Total: -1.00 -25.17 264.63 -7.15 -32.32 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.11 Total: -0.08 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 0.90 Total: -16.89 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.91 Total: -34.74 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.17 -7.15 -32.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.873 kcal (2) G-P(sol) polarization free energy of solvation -25.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds