Wall clock time and date at job start Mon Mar 30 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47068 * 2 1 4 4 C 1.52995 * 109.46991 * 239.99833 * 2 1 3 5 5 C 1.52997 * 109.47086 * 119.99840 * 2 1 3 6 6 C 1.53001 * 110.06551 * 181.20602 * 5 2 1 7 7 N 1.48124 * 109.99981 * 302.49687 * 5 2 1 8 8 C 1.48534 * 105.86466 * 144.58763 * 7 5 2 9 9 C 1.54940 * 103.22690 * 320.82976 * 8 7 5 10 10 C 1.53997 * 109.91937 * 60.00069 * 5 2 1 11 11 H 1.09005 * 110.30522 * 358.43623 * 10 5 2 12 12 C 1.50698 * 110.31009 * 120.50051 * 10 5 2 13 13 H 1.08005 * 119.99819 * 358.61694 * 12 10 5 14 14 C 1.37875 * 120.00046 * 178.61036 * 12 10 5 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 H 1.09004 * 109.47393 * 300.00094 * 1 2 3 21 21 H 1.08997 * 109.47382 * 60.00072 * 1 2 3 22 22 H 1.09000 * 109.47313 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47271 * 180.02562 * 3 2 1 24 24 H 1.09007 * 109.46782 * 300.00180 * 3 2 1 25 25 H 1.08996 * 109.47227 * 60.00004 * 3 2 1 26 26 H 1.09000 * 109.47513 * 299.99833 * 4 2 1 27 27 H 1.09007 * 109.47074 * 59.99687 * 4 2 1 28 28 H 1.09000 * 109.47391 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.47303 * 299.49629 * 6 5 2 30 30 H 1.08998 * 109.47245 * 59.49549 * 6 5 2 31 31 H 1.09000 * 109.47130 * 179.49982 * 6 5 2 32 32 H 1.00895 * 111.00503 * 265.12981 * 7 5 2 33 33 H 1.08993 * 110.66588 * 202.39522 * 8 7 5 34 34 H 1.09002 * 110.66916 * 79.26125 * 8 7 5 35 35 H 1.09000 * 110.72489 * 279.05981 * 9 8 7 36 36 H 1.09000 * 110.87812 * 155.84309 * 9 8 7 37 37 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 3.5696 -0.7030 1.2782 7 7 1.5038 -0.0679 2.4657 8 6 1.2649 -1.1615 3.4421 9 6 0.7086 -2.3082 2.5611 10 6 1.5324 -2.1751 1.2597 11 1 0.9005 -2.3614 0.3912 12 6 2.6942 -3.1347 1.2756 13 1 3.7062 -2.7578 1.2556 14 6 2.4654 -4.4937 1.3158 15 7 1.2332 -4.9526 1.3398 16 14 3.9056 -5.6831 1.3363 17 1 3.3957 -7.0773 1.3794 18 1 4.7439 -5.4250 2.5345 19 1 4.7222 -5.4929 0.1106 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 -1.7489 -1.2492 27 1 1.6765 -0.2075 -2.1392 28 1 3.1300 -0.7209 -1.2495 29 1 3.9559 -1.2139 0.3962 30 1 3.9207 0.3289 1.2832 31 1 3.9221 -1.2111 2.1758 32 1 2.1581 0.6072 2.8319 33 1 0.5300 -0.8579 4.1875 34 1 2.1977 -1.4613 3.9198 35 1 -0.3530 -2.1615 2.3622 36 1 0.8815 -3.2770 3.0296 37 1 0.4853 -4.3350 1.3296 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:19 Heat of formation + Delta-G solvation = -11.009229 kcal Electronic energy + Delta-G solvation = -15723.681592 eV Core-core repulsion = 13500.317181 eV Total energy + Delta-G solvation = -2223.364411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42068 -34.83563 -32.87310 -29.83448 -28.95328 -26.74214 -26.40600 -24.53922 -23.98911 -20.69175 -19.74220 -17.53483 -16.19981 -15.44815 -14.79636 -13.92664 -13.69663 -13.47242 -13.33833 -12.82388 -12.01844 -11.98115 -11.73513 -11.39953 -11.29144 -11.04582 -10.96259 -10.84550 -10.58886 -10.35742 -10.18059 -10.09057 -10.03598 -9.84339 -9.68003 -9.02842 -8.30799 -8.23916 -7.68409 -6.25584 -3.98996 3.43857 3.44510 3.63142 4.55334 4.98904 5.39748 5.45844 5.50549 5.67227 5.91251 6.05725 6.09530 6.12956 6.16930 6.25036 6.29232 6.33244 6.42905 6.48778 6.51782 6.59762 6.66316 6.71231 6.88129 6.93607 6.96409 7.08182 7.18286 7.26868 7.41363 7.60592 7.75251 8.11829 8.35491 8.50005 8.95669 9.72188 11.10075 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.012259 C = 0.011352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.890007 B = 2283.463579 C = 2465.843039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.043 4.043 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.116 3.884 6 C -0.148 4.148 7 N -0.666 5.666 8 C 0.047 3.953 9 C -0.121 4.121 10 C 0.040 3.960 11 H 0.029 0.971 12 C -0.596 4.596 13 H 0.062 0.938 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 1.061 2.939 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.289 1.289 20 H 0.061 0.939 21 H 0.034 0.966 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.318 0.682 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 8.842 -0.631 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.043 4.043 3 C -0.195 4.195 4 C -0.197 4.197 5 C 0.025 3.975 6 C -0.207 4.207 7 N -0.293 5.293 8 C -0.082 4.082 9 C -0.159 4.159 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.634 4.634 13 H 0.080 0.920 14 C -0.186 4.186 15 N -0.552 5.552 16 Si 0.890 3.110 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.216 1.216 20 H 0.080 0.920 21 H 0.053 0.947 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.193 7.302 -0.815 7.444 hybrid contribution 0.603 1.359 0.315 1.519 sum 1.796 8.661 -0.501 8.859 Atomic orbital electron populations 1.21736 0.95029 1.01581 1.00286 1.20334 0.95459 0.93997 0.94557 1.21885 1.00240 0.96616 1.00748 1.21920 1.00791 1.01188 0.95812 1.21575 0.92010 0.95143 0.88726 1.22423 0.97166 0.98140 1.02929 1.63179 1.47035 1.13719 1.05334 1.22848 0.98483 0.92225 0.94639 1.22660 0.97345 0.97184 0.98742 1.19661 0.95238 0.89733 0.93210 0.95271 1.22336 0.93403 0.92653 1.55041 0.91994 1.25670 1.01417 0.97404 0.94072 1.70765 0.98839 1.39078 1.46479 0.83654 0.74680 0.76326 0.76348 1.20951 1.21738 1.21601 0.91958 0.94719 0.92813 0.93322 0.94000 0.92597 0.91492 0.94235 0.92995 0.91382 0.95388 0.92686 0.86788 0.92451 0.94859 0.94441 0.91012 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.04 37.16 0.30 -2.00 16 2 C -0.04 -0.77 0.38 -154.51 -0.06 -0.82 16 3 C -0.14 -2.13 7.97 37.16 0.30 -1.83 16 4 C -0.14 -2.54 7.90 37.16 0.29 -2.24 16 5 C 0.12 2.30 0.27 -130.41 -0.04 2.27 16 6 C -0.15 -2.89 6.24 37.16 0.23 -2.66 16 7 N -0.67 -12.37 5.57 -96.32 -0.54 -12.90 16 8 C 0.05 0.94 7.54 -1.90 -0.01 0.92 16 9 C -0.12 -2.79 5.43 -24.87 -0.13 -2.93 16 10 C 0.04 0.96 1.09 -90.42 -0.10 0.86 16 11 H 0.03 0.76 4.87 -51.93 -0.25 0.51 16 12 C -0.60 -15.67 7.64 -34.44 -0.26 -15.93 16 13 H 0.06 1.61 4.70 -52.48 -0.25 1.36 16 14 C 0.02 0.51 5.09 -17.82 -0.09 0.42 16 15 N -0.92 -26.84 12.98 55.43 0.72 -26.13 16 16 Si 1.06 24.82 29.90 -169.99 -5.08 19.73 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H 0.06 1.12 7.56 -51.93 -0.39 0.72 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.05 1.05 6.44 -51.93 -0.33 0.72 16 23 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.85 7.70 -51.93 -0.40 0.45 16 26 H 0.07 1.39 6.51 -51.93 -0.34 1.05 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 29 H 0.07 1.39 5.50 -51.93 -0.29 1.11 16 30 H 0.03 0.47 6.44 -51.93 -0.33 0.14 16 31 H 0.05 1.15 7.14 -51.93 -0.37 0.78 16 32 H 0.32 5.37 8.44 -39.29 -0.33 5.04 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.85 6.52 -51.93 -0.34 1.51 16 37 H 0.27 7.96 6.07 -40.82 -0.25 7.71 16 LS Contribution 267.04 15.07 4.02 4.02 Total: -1.00 -27.64 267.04 -6.33 -33.97 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.88 Total: 5.24 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 0.42 Total: -23.94 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.18 Total: -39.03 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.64 -6.33 -33.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.963 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds