Wall clock time and date at job start Mon Mar 30 2020 02:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 C 1.53000 * 109.47362 * 239.99638 * 2 1 3 5 5 N 1.46504 * 109.47041 * 119.99560 * 2 1 3 6 6 C 1.47241 * 125.82119 * 241.52198 * 5 2 1 7 7 C 1.54164 * 103.27521 * 179.97438 * 6 5 2 8 8 N 1.46948 * 104.02134 * 359.80030 * 7 6 5 9 9 C 1.29307 * 110.09448 * 0.35743 * 8 7 6 10 10 N 1.37710 * 122.87446 * 179.87551 * 9 8 7 11 11 C 1.37092 * 119.99844 * 354.79806 * 10 9 8 12 12 H 1.07999 * 120.00301 * 359.97438 * 11 10 9 13 13 C 1.38842 * 119.99894 * 179.72547 * 11 10 9 14 14 N 1.31520 * 120.00234 * 180.27682 * 13 11 10 15 15 Si 1.86803 * 119.99868 * 0.27229 * 13 11 10 16 16 H 1.48499 * 109.47197 * 90.00384 * 15 13 11 17 17 H 1.48505 * 109.47044 * 210.00257 * 15 13 11 18 18 H 1.48497 * 109.47358 * 330.00038 * 15 13 11 19 19 H 1.08995 * 109.47127 * 304.99771 * 1 2 3 20 20 H 1.09003 * 109.47005 * 64.99756 * 1 2 3 21 21 H 1.08996 * 109.47009 * 184.99744 * 1 2 3 22 22 H 1.08998 * 109.47251 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.46566 * 299.99909 * 3 2 1 24 24 H 1.08998 * 109.47218 * 59.99693 * 3 2 1 25 25 H 1.09001 * 109.47061 * 300.00229 * 4 2 1 26 26 H 1.09000 * 109.47058 * 59.99747 * 4 2 1 27 27 H 1.09002 * 109.47346 * 180.02562 * 4 2 1 28 28 H 1.08993 * 110.66252 * 298.44555 * 6 5 2 29 29 H 1.09006 * 110.65693 * 61.55652 * 6 5 2 30 30 H 1.09008 * 110.51827 * 118.63286 * 7 6 5 31 31 H 1.08999 * 110.52738 * 241.22857 * 7 6 5 32 32 H 0.96997 * 120.00113 * 174.79410 * 10 9 8 33 33 H 0.97004 * 119.99919 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 2.8423 -0.0930 2.2602 7 6 3.0506 -1.2609 3.2448 8 7 2.3203 -2.3786 2.6309 9 6 1.7860 -2.0010 1.5156 10 7 1.0420 -2.8437 0.7201 11 6 0.9298 -4.1709 1.0445 12 1 1.4253 -4.5558 1.9235 13 6 0.1751 -5.0194 0.2456 14 7 0.0630 -6.2916 0.5597 15 14 -0.6814 -4.3539 -1.2753 16 1 0.2273 -4.4667 -2.4444 17 1 -1.9164 -5.1379 -1.5309 18 1 -1.0360 -2.9281 -1.0598 19 1 -0.3633 0.5894 0.8418 20 1 -0.3633 0.4344 -0.9314 21 1 -0.3633 -1.0237 0.0895 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6767 -1.7490 -1.2491 26 1 1.6767 -0.2076 -2.1392 27 1 3.1301 -0.7217 -1.2489 28 1 3.7971 0.2488 1.8610 29 1 2.3107 0.7268 2.7436 30 1 4.1105 -1.4980 3.3375 31 1 2.6275 -1.0189 4.2197 32 1 0.5972 -2.4981 -0.0696 33 1 -0.4641 -6.8844 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:46 Heat of formation + Delta-G solvation = 52.704871 kcal Electronic energy + Delta-G solvation = -14879.475195 eV Core-core repulsion = 12555.333291 eV Total energy + Delta-G solvation = -2324.141903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.138 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70676 -35.87651 -34.88619 -31.66381 -29.54747 -28.22247 -27.14586 -27.08985 -24.01124 -21.97021 -20.20624 -18.63165 -17.63923 -16.14697 -15.41107 -14.82722 -14.55170 -13.88844 -13.49584 -12.88487 -12.83433 -12.54696 -12.37362 -12.24028 -11.79431 -11.77188 -11.62489 -11.39515 -11.20973 -11.10387 -10.77300 -10.62048 -10.49166 -9.79142 -9.12736 -8.38241 -7.89080 -6.82670 -6.09037 -3.53863 3.09799 3.14443 3.22644 3.50338 3.94392 4.25509 4.79836 4.90549 5.00840 5.18032 5.30521 5.37262 5.57618 5.58411 5.73359 5.75775 5.82238 5.87767 5.93819 5.99489 6.04178 6.26132 6.40091 6.45107 6.58520 6.80921 7.23624 7.45164 7.98863 8.62477 8.82294 9.11982 9.63121 9.88919 11.05442 Molecular weight = 211.14amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.012892 C = 0.009828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.668640 B = 2171.291358 C = 2848.453755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 C -0.144 4.144 4 C -0.167 4.167 5 N -0.657 5.657 6 C 0.097 3.903 7 C 0.050 3.950 8 N -0.645 5.645 9 C 0.585 3.415 10 N -0.599 5.599 11 C -0.271 4.271 12 H 0.125 0.875 13 C 0.032 3.968 14 N -0.897 5.897 15 Si 0.865 3.135 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.273 1.273 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.378 0.622 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 15.296 -3.504 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.100 3.900 3 C -0.201 4.201 4 C -0.226 4.226 5 N -0.388 5.388 6 C -0.028 4.028 7 C -0.082 4.082 8 N -0.393 5.393 9 C 0.225 3.775 10 N -0.231 5.231 11 C -0.401 4.401 12 H 0.142 0.858 13 C -0.169 4.169 14 N -0.539 5.539 15 Si 0.692 3.308 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.199 1.199 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.215 0.785 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.329 14.293 -2.985 14.786 hybrid contribution -0.708 1.183 -1.578 2.096 sum 1.621 15.476 -4.563 16.216 Atomic orbital electron populations 1.22394 0.95325 1.03158 1.01876 1.20060 0.93123 0.92154 0.84666 1.21976 1.01449 0.94479 1.02232 1.22357 1.02000 1.01436 0.96775 1.48182 1.58254 1.09338 1.22980 1.22246 0.93842 0.97191 0.89497 1.22625 0.98978 0.89572 0.96995 1.74697 1.30182 1.23576 1.10839 1.19514 0.89728 0.79266 0.88971 1.40456 1.49629 1.07826 1.25150 1.19431 1.28685 0.80281 1.11686 0.85778 1.24825 0.98523 0.95411 0.98126 1.69636 1.42046 1.03151 1.39087 0.86902 0.80558 0.78719 0.84574 1.19861 1.20267 1.19909 0.92117 0.91806 0.91750 0.92110 0.91556 0.92148 0.91891 0.91790 0.91951 0.92566 0.92642 0.92354 0.92314 0.78473 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 8.49 37.16 0.32 -2.25 16 2 C 0.19 2.83 1.06 -131.82 -0.14 2.69 16 3 C -0.14 -1.64 7.66 37.16 0.28 -1.36 16 4 C -0.17 -2.54 8.43 37.16 0.31 -2.23 16 5 N -0.66 -12.16 2.91 -159.65 -0.47 -12.63 16 6 C 0.10 1.56 6.38 -3.03 -0.02 1.54 16 7 C 0.05 0.94 8.04 -3.19 -0.03 0.92 16 8 N -0.65 -15.87 10.64 -61.19 -0.65 -16.52 16 9 C 0.59 13.68 7.70 -321.90 -2.48 11.20 16 10 N -0.60 -14.98 4.29 -12.63 -0.05 -15.04 16 11 C -0.27 -7.85 10.23 -14.98 -0.15 -8.00 16 12 H 0.12 4.02 7.47 -52.49 -0.39 3.63 16 13 C 0.03 0.90 5.50 -17.46 -0.10 0.81 16 14 N -0.90 -27.17 13.96 55.49 0.77 -26.40 16 15 Si 0.86 20.41 27.74 -169.99 -4.72 15.69 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -5.97 6.23 56.52 0.35 -5.62 16 19 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 1.18 5.41 -51.93 -0.28 0.90 16 22 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 25 H 0.06 1.14 5.63 -51.93 -0.29 0.85 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 29 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.38 8.71 1.52 -40.82 -0.06 8.65 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -31.63 260.24 -7.99 -39.62 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.80 Total: 8.03 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.00 Total: 3.32 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -0.40 Total: -70.59 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.72 Total: 15.69 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.63 -7.99 -39.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.323 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds