Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.50704 * 109.47090 * 239.99886 * 2 1 3 5 5 H 1.08001 * 120.00342 * 239.99884 * 4 2 1 6 6 C 1.37881 * 119.99745 * 60.00606 * 4 2 1 7 7 N 1.31508 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99648 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47458 * 60.00000 * 8 6 4 10 10 H 1.48506 * 109.46683 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47333 * 299.99378 * 8 6 4 12 12 N 1.46504 * 109.46809 * 120.00394 * 2 1 3 13 13 C 1.46495 * 120.00278 * 60.00062 * 12 2 1 14 14 C 1.37480 * 119.99677 * 239.99691 * 12 2 1 15 15 N 1.29267 * 118.85315 * 0.02562 * 14 12 2 16 16 C 1.45836 * 123.75426 * 180.94181 * 15 14 12 17 17 C 1.53026 * 110.59189 * 339.22481 * 16 15 14 18 18 C 1.53620 * 108.44203 * 49.40806 * 17 16 15 19 19 N 1.37479 * 118.85028 * 179.97438 * 14 12 2 20 20 H 1.09002 * 109.46991 * 60.00021 * 1 2 3 21 21 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47053 * 299.99640 * 1 2 3 23 23 H 0.97001 * 120.00339 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.47083 * 269.99862 * 13 12 2 25 25 H 1.08999 * 109.46975 * 29.99857 * 13 12 2 26 26 H 1.08996 * 109.47094 * 150.00120 * 13 12 2 27 27 H 1.09001 * 109.25365 * 218.94263 * 16 15 14 28 28 H 1.08994 * 109.22252 * 99.49015 * 16 15 14 29 29 H 1.08997 * 109.64818 * 169.09556 * 17 16 15 30 30 H 1.09009 * 109.64375 * 289.72607 * 17 16 15 31 31 H 1.08998 * 109.87253 * 60.06111 * 18 17 16 32 32 H 1.08998 * 109.87506 * 181.12239 * 18 17 16 33 33 H 0.96992 * 120.64373 * 347.10814 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5197 -4.0083 10 1 1.8270 -0.4197 -5.2204 11 1 3.8076 -1.1189 -4.0077 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0933 1.4279 14 6 2.8087 -0.0226 2.1011 15 7 3.1070 1.2146 1.8748 16 6 3.9519 2.0178 2.7511 17 6 4.0002 1.4120 4.1555 18 6 4.3186 -0.0854 4.0282 19 7 3.2534 -0.6934 3.2157 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.7083 1.1610 -3.4844 24 1 0.7375 -2.1445 1.9993 25 1 1.5295 -2.5969 0.4707 26 1 2.4628 -2.5819 1.9863 27 1 3.5500 3.0293 2.8097 28 1 4.9611 2.0552 2.3410 29 1 4.7779 1.9035 4.7401 30 1 3.0341 1.5409 4.6436 31 1 5.2822 -0.2188 3.5364 32 1 4.3391 -0.5453 5.0162 33 1 2.8723 -1.5508 3.4616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306892344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = 20.812869 kcal Electronic energy + Delta-G solvation = -14564.052037 eV Core-core repulsion = 12238.527193 eV Total energy + Delta-G solvation = -2325.524844 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32595 -37.60013 -34.86227 -33.55518 -32.18757 -30.53370 -27.41354 -27.16901 -25.47814 -23.73853 -21.75172 -19.39403 -18.67757 -18.15359 -16.99581 -16.30426 -16.04292 -15.43428 -14.90361 -14.76341 -14.37013 -14.15004 -13.81849 -13.46695 -13.06077 -12.82793 -12.74324 -12.67890 -12.37775 -12.12073 -12.04611 -11.97536 -11.54354 -10.96703 -10.45170 -9.46995 -9.26404 -8.33338 -7.98827 -6.18099 1.43372 1.45711 1.52881 2.09783 2.30504 2.48812 3.10816 3.23278 3.98355 4.10492 4.20953 4.41952 4.67094 4.71668 4.76815 4.80209 4.87232 4.90842 5.01628 5.06486 5.15226 5.25066 5.31786 5.61331 5.68335 5.83469 6.01956 6.29305 6.47018 6.57045 6.94767 7.39888 7.51001 8.12541 8.99692 Molecular weight = 211.14amu Principal moments of inertia in cm(-1) A = 0.041320 B = 0.008800 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.470662 B = 3180.894579 C = 3280.388468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.287 3.713 3 H 0.031 0.969 4 C -0.531 4.531 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.613 5.613 13 C 0.100 3.900 14 C 0.627 3.373 15 N -0.731 5.731 16 C 0.086 3.914 17 C -0.159 4.159 18 C 0.130 3.870 19 N -0.772 5.772 20 H 0.064 0.936 21 H 0.036 0.964 22 H 0.014 0.986 23 H 0.262 0.738 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -5.016 12.676 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.185 3.815 3 H 0.049 0.951 4 C -0.570 4.570 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.205 1.205 12 N -0.334 5.334 13 C -0.044 4.044 14 C 0.264 3.736 15 N -0.475 5.475 16 C -0.045 4.045 17 C -0.198 4.198 18 C 0.006 3.994 19 N -0.420 5.420 20 H 0.083 0.917 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.275 -4.215 11.960 13.382 hybrid contribution 0.297 -0.726 -0.342 0.856 sum 4.572 -4.941 11.618 13.428 Atomic orbital electron populations 1.21897 0.98530 0.99190 0.99370 1.18336 0.90181 0.92840 0.80174 0.95140 1.21639 1.31101 1.12633 0.91671 0.92971 1.25662 0.95384 0.95754 1.01693 1.70020 1.37660 1.23981 1.24085 0.85607 0.78304 0.78925 0.78691 1.19100 1.20927 1.20506 1.46465 1.53334 1.11340 1.22250 1.21496 0.99698 0.81281 1.01883 1.18551 0.86582 0.86521 0.81919 1.71028 1.33311 1.05797 1.37407 1.21409 0.95321 0.96831 0.90920 1.22371 1.02839 0.96973 0.97661 1.21675 0.88920 0.93026 0.95808 1.45275 1.43895 1.25408 1.27451 0.91682 0.94511 0.96688 0.92905 0.93057 0.91775 0.90704 0.92334 0.93930 0.87929 0.92278 0.92953 0.86585 0.76052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 8.97 71.98 0.65 -5.99 16 2 C 0.29 15.40 2.64 44.25 0.12 15.52 16 3 H 0.03 1.92 6.75 -2.39 -0.02 1.90 16 4 C -0.53 -29.90 7.99 25.60 0.20 -29.69 16 5 H 0.05 2.89 7.33 -2.91 -0.02 2.87 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -54.35 11.32 21.45 0.24 -54.11 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 N -0.61 -27.05 2.83 -714.87 -2.02 -29.07 16 13 C 0.10 3.40 9.12 127.77 1.17 4.56 16 14 C 0.63 26.09 8.09 261.00 2.11 28.20 16 15 N -0.73 -33.80 9.01 -351.55 -3.17 -36.97 16 16 C 0.09 3.09 7.19 86.51 0.62 3.71 16 17 C -0.16 -4.04 6.25 30.81 0.19 -3.85 16 18 C 0.13 3.01 7.21 86.47 0.62 3.63 16 19 N -0.77 -22.94 5.49 -347.82 -1.91 -24.85 16 20 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 21 H 0.04 1.71 7.67 -2.38 -0.02 1.69 16 22 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 2.37 7.02 -2.39 -0.02 2.35 16 26 H 0.07 2.02 6.56 -2.39 -0.02 2.01 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.40 9.76 6.89 -92.71 -0.64 9.12 16 Total: -1.00 -68.64 264.00 1.76 -66.89 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.45 Total: 14.32 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.13 Total: 17.32 kcal Atomic # 7 Polarization: -138.14 SS G_CDS: -6.86 Total: -144.99 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.64 1.76 -66.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306892344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.699 kcal (2) G-P(sol) polarization free energy of solvation -68.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds