Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53937 * 113.73373 * 185.00234 * 3 2 1 5 5 N 1.47955 * 86.18157 * 221.91843 * 4 3 2 6 6 C 1.46898 * 111.00208 * 137.57726 * 5 4 3 7 7 C 1.53004 * 109.47314 * 170.00318 * 6 5 4 8 8 C 1.52998 * 109.46910 * 300.00363 * 7 6 5 9 9 C 1.52996 * 109.46966 * 60.00287 * 7 6 5 10 10 C 1.50703 * 109.47048 * 180.02562 * 7 6 5 11 11 H 1.07997 * 119.99968 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99618 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00070 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99592 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47009 * 90.00296 * 14 12 10 16 16 H 1.48505 * 109.46653 * 210.00121 * 14 12 10 17 17 H 1.48497 * 109.47153 * 329.99588 * 14 12 10 18 18 C 1.47967 * 90.76348 * 24.68862 * 5 4 3 19 19 H 1.08999 * 109.46733 * 59.99919 * 1 2 3 20 20 H 1.09000 * 109.46563 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46676 * 299.99784 * 1 2 3 22 22 H 1.09005 * 109.47166 * 240.00274 * 2 1 3 23 23 H 1.09001 * 109.47243 * 120.00060 * 2 1 3 24 24 H 1.08998 * 113.01024 * 316.63119 * 3 2 1 25 25 H 1.09005 * 113.75745 * 336.23566 * 4 3 2 26 26 H 1.08996 * 113.76539 * 107.60252 * 4 3 2 27 27 H 1.09002 * 109.47503 * 290.00559 * 6 5 4 28 28 H 1.09001 * 109.46828 * 50.00321 * 6 5 4 29 29 H 1.09001 * 109.47501 * 59.99643 * 8 7 6 30 30 H 1.09006 * 109.47421 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47082 * 299.99905 * 8 7 6 32 32 H 1.08993 * 109.47118 * 60.00079 * 9 7 6 33 33 H 1.09006 * 109.46822 * 180.02562 * 9 7 6 34 34 H 1.08997 * 109.47075 * 299.99542 * 9 7 6 35 35 H 0.96996 * 119.99893 * 180.02562 * 13 12 10 36 36 H 1.08994 * 113.76237 * 220.99251 * 18 5 4 37 37 H 1.09000 * 113.76000 * 89.62647 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.5587 -0.1229 5 7 3.4731 2.6175 0.9060 6 6 4.5443 2.4832 1.9022 7 6 4.5661 3.7233 2.7982 8 6 4.8183 4.9662 1.9424 9 6 3.2199 3.8603 3.5122 10 6 5.6654 3.5857 3.8197 11 1 6.2867 2.7024 3.8288 12 6 5.8787 4.5881 4.7421 13 7 5.1231 5.6644 4.7301 14 14 7.2409 4.4172 6.0089 15 1 8.4978 4.9911 5.4646 16 1 6.8600 5.1443 7.2465 17 1 7.4478 2.9806 6.3226 18 6 2.2065 2.0408 1.4085 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.4944 2.0873 -0.6889 25 1 4.1061 0.6701 0.2105 26 1 3.9065 1.9202 -1.0946 27 1 4.3646 1.5976 2.5119 28 1 5.5034 2.3856 1.3935 29 1 4.0235 5.0659 1.2032 30 1 4.8334 5.8499 2.5806 31 1 5.7774 4.8686 1.4337 32 1 3.0402 2.9748 4.1218 33 1 3.2353 4.7440 4.1501 34 1 2.4251 3.9600 2.7730 35 1 5.2734 6.3698 5.3788 36 1 1.4534 2.7874 1.6603 37 1 2.3437 1.2932 2.1898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315988637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = 0.861762 kcal Electronic energy + Delta-G solvation = -14758.356700 eV Core-core repulsion = 12535.507054 eV Total energy + Delta-G solvation = -2222.849646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.02503 -37.42753 -34.39263 -32.97904 -29.17396 -27.89923 -27.25444 -26.49472 -25.30506 -22.63721 -20.53997 -20.13772 -17.89978 -16.98456 -16.52314 -16.01624 -15.89783 -15.07741 -14.47167 -14.22425 -14.07210 -13.74302 -13.25950 -13.21306 -12.95087 -12.84081 -12.64370 -12.46577 -12.19534 -12.09836 -12.02800 -11.74370 -11.44242 -11.21303 -11.15040 -10.83723 -10.52099 -10.34149 -9.46504 -7.96743 -6.14848 1.41314 1.42657 1.51536 2.45446 3.22511 3.24467 3.56099 3.84615 4.32520 4.36207 4.46615 4.50199 4.60065 4.61854 4.68323 4.82629 4.88750 4.92258 5.00272 5.03502 5.13581 5.20101 5.25120 5.33639 5.39652 5.42854 5.52443 5.56671 5.62913 5.71309 5.77691 6.20489 6.27319 6.36384 6.52283 6.94888 7.52729 9.01228 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057082 B = 0.007023 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.408013 B = 3985.928434 C = 3999.639161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.099 4.099 4 C 0.000 4.000 5 N -0.492 5.492 6 C 0.053 3.947 7 C 0.063 3.937 8 C -0.105 4.105 9 C -0.113 4.113 10 C -0.529 4.529 11 H 0.043 0.957 12 C 0.021 3.979 13 N -0.905 5.905 14 Si 0.946 3.054 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.010 3.990 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.021 0.979 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 -9.345 -8.423 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.118 4.118 4 C -0.129 4.129 5 N -0.214 5.214 6 C -0.075 4.075 7 C 0.062 3.938 8 C -0.163 4.163 9 C -0.171 4.171 10 C -0.567 4.567 11 H 0.062 0.938 12 C -0.178 4.178 13 N -0.544 5.544 14 Si 0.773 3.227 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.119 4.119 19 H 0.079 0.921 20 H 0.081 0.919 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.855 -8.479 -8.495 13.822 hybrid contribution 1.068 -0.568 1.344 1.808 sum -5.787 -9.047 -7.152 12.903 Atomic orbital electron populations 1.21728 0.94855 1.02015 1.01928 1.21507 0.96781 0.94485 1.02180 1.22981 0.94981 0.97543 0.96266 1.24015 0.97053 0.94169 0.97673 1.68471 1.02928 1.40335 1.09626 1.22520 0.94003 0.97652 0.93326 1.18074 0.93114 0.91123 0.91445 1.21465 0.96723 1.00694 0.97403 1.21656 0.96950 0.99676 0.98831 1.21464 1.16432 1.03596 1.15235 0.93831 1.25572 0.98057 0.95101 0.99057 1.69983 1.39724 1.08154 1.36527 0.85744 0.79972 0.78011 0.78984 1.20437 1.20947 1.19728 1.24039 0.93661 0.97479 0.96712 0.92103 0.91900 0.93314 0.90566 0.92651 0.88073 0.91580 0.89280 0.96026 0.93486 0.95035 0.93284 0.97185 0.96914 0.93153 0.94659 0.93308 0.90589 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.90 71.98 0.71 -1.80 16 2 C -0.11 -2.18 5.79 30.59 0.18 -2.00 16 3 C -0.10 -2.42 3.83 -10.15 -0.04 -2.46 16 4 C 0.00 -0.01 7.51 86.41 0.65 0.64 16 5 N -0.49 -17.97 5.17 -907.81 -4.69 -22.67 16 6 C 0.05 2.31 3.84 86.30 0.33 2.64 16 7 C 0.06 3.19 0.57 -52.93 -0.03 3.16 16 8 C -0.10 -5.38 8.09 71.98 0.58 -4.80 16 9 C -0.11 -5.63 7.38 71.98 0.53 -5.10 16 10 C -0.53 -29.46 8.01 25.60 0.21 -29.25 16 11 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 12 C 0.02 1.17 5.15 84.66 0.44 1.60 16 13 N -0.90 -51.94 9.35 21.45 0.20 -51.74 16 14 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 C 0.01 0.31 5.72 86.40 0.49 0.81 16 19 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 20 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 23 H 0.05 1.16 7.84 -2.39 -0.02 1.14 16 24 H 0.10 2.35 8.13 -2.39 -0.02 2.33 16 25 H 0.07 1.81 7.88 -2.38 -0.02 1.79 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.02 0.93 7.38 -2.39 -0.02 0.92 16 28 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 29 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 30 H 0.05 2.75 6.07 -2.38 -0.01 2.73 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 2.77 6.07 -2.38 -0.01 2.76 16 34 H 0.03 1.58 5.61 -2.39 -0.01 1.57 16 35 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.08 2.48 7.00 -2.39 -0.02 2.46 16 37 H 0.06 1.93 7.22 -2.39 -0.02 1.91 16 Total: -1.00 -59.26 283.11 2.59 -56.67 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.00 Total: 8.14 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 4.05 Total: -36.57 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -4.49 Total: -74.40 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.26 2.59 -56.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315988637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.530 kcal (2) G-P(sol) polarization free energy of solvation -59.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds