Wall clock time and date at job start Mon Mar 30 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 C 1.52999 * 109.47213 * 239.99768 * 2 1 3 5 5 H 1.09004 * 109.47433 * 305.49878 * 4 2 1 6 6 N 1.46901 * 109.47406 * 185.49318 * 4 2 1 7 7 C 1.46901 * 110.99591 * 82.16390 * 6 4 2 8 8 C 1.50696 * 109.47030 * 176.34450 * 7 6 4 9 9 H 1.07997 * 119.99937 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00061 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99930 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00168 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.46883 * 89.99756 * 12 10 8 14 14 H 1.48492 * 109.47033 * 209.99841 * 12 10 8 15 15 H 1.48497 * 109.47014 * 330.00344 * 12 10 8 16 16 C 1.53002 * 109.46709 * 65.49523 * 4 2 1 17 17 C 1.53785 * 113.61642 * 279.13638 * 16 4 2 18 18 C 1.53959 * 87.02024 * 220.04988 * 17 16 4 19 19 C 1.53784 * 87.11141 * 25.36196 * 18 17 16 20 20 H 1.08995 * 109.47155 * 59.99982 * 1 2 3 21 21 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46849 * 299.99586 * 1 2 3 23 23 H 1.09008 * 109.47026 * 120.00165 * 2 1 3 24 24 H 1.09002 * 109.46890 * 66.76650 * 3 2 1 25 25 H 1.08997 * 109.47410 * 186.76585 * 3 2 1 26 26 H 1.09004 * 109.47053 * 306.77223 * 3 2 1 27 27 H 1.00894 * 110.99870 * 206.11678 * 6 4 2 28 28 H 1.08996 * 109.47229 * 296.34512 * 7 6 4 29 29 H 1.09003 * 109.47473 * 56.34341 * 7 6 4 30 30 H 0.96997 * 120.00099 * 179.97438 * 11 10 8 31 31 H 1.08996 * 112.85384 * 50.33484 * 16 4 2 32 32 H 1.09002 * 113.61066 * 334.57020 * 17 16 4 33 33 H 1.08994 * 113.61130 * 105.46955 * 17 16 4 34 34 H 1.09000 * 113.53740 * 270.81171 * 18 17 16 35 35 H 1.08992 * 113.74241 * 139.94248 * 18 17 16 36 36 H 1.08996 * 113.61511 * 220.09185 * 19 18 17 37 37 H 1.09004 * 113.61256 * 89.18451 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5985 -1.7166 -1.2998 6 7 3.5030 -0.8372 -1.1848 7 6 3.9043 -1.9833 -0.3581 8 6 5.4045 -2.1237 -0.3884 9 1 6.0001 -1.4306 -0.9638 10 6 6.0165 -3.1364 0.3193 11 7 7.3257 -3.2586 0.2933 12 14 4.9863 -4.3349 1.3151 13 1 4.6126 -5.4927 0.4635 14 1 5.7712 -4.8115 2.4820 15 1 3.7559 -3.6532 1.7911 16 6 1.6459 0.0753 -2.4946 17 6 0.1942 -0.1616 -2.9436 18 6 0.7242 -0.1496 -4.3891 19 6 2.0812 -0.5867 -3.8126 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.7789 1.9201 0.9444 25 1 3.1233 1.4448 -0.1211 26 1 1.5811 1.9901 -0.8232 27 1 3.9017 -0.9010 -2.1094 28 1 3.5750 -1.8239 0.6686 29 1 3.4464 -2.8918 -0.7496 30 1 7.7564 -3.9708 0.7915 31 1 1.9151 1.1293 -2.4257 32 1 -0.2067 -1.1266 -2.6335 33 1 -0.4742 0.6686 -2.7157 34 1 0.7401 0.8433 -4.8386 35 1 0.2615 -0.8980 -5.0323 36 1 2.9338 -0.0992 -4.2853 37 1 2.1971 -1.6682 -3.7406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324969414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:20 Heat of formation + Delta-G solvation = -16.964915 kcal Electronic energy + Delta-G solvation = -14725.094024 eV Core-core repulsion = 12501.471355 eV Total energy + Delta-G solvation = -2223.622669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65134 -37.13698 -35.38881 -33.92997 -29.93935 -28.05796 -27.00643 -26.24804 -24.24707 -23.22221 -20.41465 -19.91514 -18.97923 -16.90207 -16.81442 -16.16486 -15.61620 -15.60015 -14.72445 -14.64642 -14.21802 -13.85013 -13.66831 -13.30139 -13.13610 -12.79664 -12.70640 -12.54552 -12.37767 -12.10330 -11.86040 -11.67907 -11.57336 -11.42320 -11.15517 -10.98369 -10.83547 -10.62656 -9.07860 -8.33020 -6.36829 1.29958 1.32336 1.43880 2.30702 3.00812 3.40416 3.74024 3.77788 3.98908 4.02802 4.25431 4.35489 4.41450 4.58248 4.67624 4.78001 4.85904 4.87751 4.90404 4.93245 5.03425 5.07539 5.13686 5.14413 5.15214 5.24809 5.33830 5.43606 5.52629 5.59409 5.63099 5.70921 6.00383 6.58729 6.67035 6.81354 7.28464 8.83768 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.008469 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.212484 B = 3305.401925 C = 3605.230776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.131 4.131 4 C 0.098 3.902 5 H 0.020 0.980 6 N -0.679 5.679 7 C 0.179 3.821 8 C -0.527 4.527 9 H 0.038 0.962 10 C 0.009 3.991 11 N -0.946 5.946 12 Si 0.948 3.052 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.255 1.255 16 C -0.106 4.106 17 C -0.124 4.124 18 C -0.130 4.130 19 C -0.151 4.151 20 H 0.079 0.921 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.334 0.666 28 H 0.020 0.980 29 H -0.023 1.023 30 H 0.268 0.732 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.588 6.484 -5.151 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.188 4.188 4 C -0.012 4.012 5 H 0.038 0.962 6 N -0.309 5.309 7 C 0.051 3.949 8 C -0.565 4.565 9 H 0.056 0.944 10 C -0.188 4.188 11 N -0.586 5.586 12 Si 0.772 3.228 13 H -0.191 1.191 14 H -0.203 1.203 15 H -0.179 1.179 16 C -0.125 4.125 17 C -0.161 4.161 18 C -0.168 4.168 19 C -0.189 4.189 20 H 0.098 0.902 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.038 0.962 29 H -0.006 1.006 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.373 6.836 -4.571 19.221 hybrid contribution 0.367 -1.583 0.055 1.626 sum -17.006 5.252 -4.516 18.363 Atomic orbital electron populations 1.21962 0.93486 1.01653 1.03041 1.21055 0.96252 0.96977 0.96405 1.21683 1.01034 0.94903 1.01196 1.21649 0.87441 0.96353 0.95734 0.96176 1.60375 1.08689 1.44094 1.17778 1.19715 0.93767 0.87708 0.93746 1.21357 0.91934 1.13262 1.29952 0.94367 1.25851 0.96035 0.99442 0.97510 1.70047 1.10474 1.34184 1.43927 0.85697 0.79293 0.79135 0.78705 1.19128 1.20309 1.17854 1.22742 0.97672 1.00154 0.91916 1.23010 0.95055 1.02327 0.95752 1.22814 0.95279 1.02193 0.96476 1.22956 0.98681 0.99915 0.97323 0.90187 0.93412 0.92173 0.94501 0.93082 0.93795 0.91432 0.84744 0.96218 1.00578 0.92326 0.88208 0.90532 0.89582 0.89006 0.90977 0.91722 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.55 71.98 0.62 -2.67 16 2 C -0.09 -2.68 2.80 -10.80 -0.03 -2.71 16 3 C -0.13 -3.73 8.49 71.98 0.61 -3.12 16 4 C 0.10 3.23 1.66 44.92 0.07 3.30 16 5 H 0.02 0.71 7.63 -2.39 -0.02 0.70 16 6 N -0.68 -28.59 5.68 -495.57 -2.82 -31.41 16 7 C 0.18 8.98 4.33 85.56 0.37 9.35 16 8 C -0.53 -31.52 9.83 25.60 0.25 -31.27 16 9 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 10 C 0.01 0.55 5.47 84.65 0.46 1.02 16 11 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 12 Si 0.95 45.53 27.47 68.60 1.88 47.42 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 16 C -0.11 -2.72 2.72 -10.26 -0.03 -2.75 16 17 C -0.12 -2.43 5.54 31.18 0.17 -2.26 16 18 C -0.13 -2.46 8.09 31.18 0.25 -2.21 16 19 C -0.15 -3.80 6.57 31.12 0.20 -3.60 16 20 H 0.08 1.53 5.00 -2.39 -0.01 1.52 16 21 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 1.33 7.21 -2.38 -0.02 1.32 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.50 7.59 -2.39 -0.02 1.48 16 26 H 0.07 1.60 6.56 -2.39 -0.02 1.59 16 27 H 0.33 14.07 7.40 -89.70 -0.66 13.41 16 28 H 0.02 1.01 6.32 -2.39 -0.02 1.00 16 29 H -0.02 -1.16 7.40 -2.39 -0.02 -1.18 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.10 2.52 6.22 -2.39 -0.01 2.50 16 32 H 0.08 1.56 7.99 -2.39 -0.02 1.54 16 33 H 0.09 1.38 7.08 -2.39 -0.02 1.36 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.76 8.10 -2.38 -0.02 1.74 16 Total: -1.00 -65.74 281.66 2.63 -63.10 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.31 Total: 17.75 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 2.96 Total: -36.91 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.52 Total: -91.36 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.42 kcal Total: -65.74 2.63 -63.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324969414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.139 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds