Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99990 * 2 1 4 4 C 1.53002 * 109.46766 * 293.95180 * 3 2 1 5 5 C 1.50708 * 109.46993 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99769 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00129 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47289 * 59.99172 * 9 7 5 11 11 H 1.48504 * 109.47180 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47003 * 299.99428 * 9 7 5 13 13 C 1.46903 * 110.99759 * 123.94910 * 2 1 3 14 14 H 1.09006 * 112.90491 * 287.55347 * 13 2 1 15 15 C 1.53773 * 113.61619 * 58.80749 * 13 2 1 16 16 C 1.53775 * 87.08454 * 139.98132 * 15 13 2 17 17 C 1.53780 * 113.61529 * 156.30722 * 13 2 1 18 18 C 1.53005 * 113.61054 * 334.56634 * 17 13 2 19 19 C 1.53002 * 113.61790 * 105.46831 * 17 13 2 20 20 H 1.08995 * 109.47933 * 302.07501 * 1 2 3 21 21 H 1.09003 * 109.46999 * 62.08357 * 1 2 3 22 22 H 1.09006 * 109.47133 * 182.07498 * 1 2 3 23 23 H 1.09005 * 109.47092 * 53.94506 * 3 2 1 24 24 H 1.08996 * 109.47445 * 173.95287 * 3 2 1 25 25 H 1.09005 * 109.47199 * 299.99840 * 4 3 2 26 26 H 1.09005 * 109.47313 * 59.99868 * 4 3 2 27 27 H 0.96998 * 119.99940 * 180.02562 * 8 7 5 28 28 H 1.09004 * 113.61449 * 254.52744 * 15 13 2 29 29 H 1.09003 * 113.61432 * 25.42972 * 15 13 2 30 30 H 1.09007 * 113.61796 * 89.11669 * 16 15 13 31 31 H 1.09000 * 113.61919 * 219.93954 * 16 15 13 32 32 H 1.08996 * 109.47148 * 65.91653 * 18 17 13 33 33 H 1.09006 * 109.46597 * 185.91921 * 18 17 13 34 34 H 1.09001 * 109.47152 * 305.91113 * 18 17 13 35 35 H 1.08993 * 109.46913 * 60.00344 * 19 17 13 36 36 H 1.08999 * 109.46794 * 180.02562 * 19 17 13 37 37 H 1.08999 * 109.46679 * 300.00210 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 -1.3183 5 6 2.1720 3.4641 -1.3186 6 1 2.7200 3.8322 -0.4639 7 6 1.9661 4.2815 -2.4097 8 7 1.2984 3.8334 -3.4504 9 14 2.6356 6.0254 -2.4098 10 1 4.1128 5.9886 -2.2627 11 1 2.2824 6.6912 -3.6894 12 1 2.0441 6.7827 -1.2777 13 6 1.9954 -0.7659 1.1377 14 1 1.8647 -0.2535 2.0909 15 6 1.5348 -2.2329 1.1586 16 6 2.9609 -2.5922 1.6079 17 6 3.4207 -1.2986 0.9151 18 6 3.7807 -1.4879 -0.5599 19 6 4.4904 -0.5321 1.6955 20 1 -0.3635 0.5457 0.8707 21 1 -0.3633 0.4812 -0.9081 22 1 -0.3634 -1.0270 0.0372 23 1 1.5609 1.9274 0.8309 24 1 3.0796 1.3445 0.1083 25 1 2.0658 1.5014 -2.1492 26 1 0.5471 2.0843 -1.4266 27 1 1.1539 4.4083 -4.2181 28 1 0.7744 -2.4412 1.9113 29 1 1.2757 -2.6233 0.1744 30 1 3.0943 -2.5792 2.6897 31 1 3.3494 -3.4991 1.1445 32 1 3.8087 -0.5171 -1.0546 33 1 4.7586 -1.9634 -0.6370 34 1 3.0314 -2.1183 -1.0388 35 1 4.2806 -0.6009 2.7629 36 1 5.4698 -0.9634 1.4889 37 1 4.4828 0.5143 1.3904 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694308165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = 5.491777 kcal Electronic energy + Delta-G solvation = -14703.592792 eV Core-core repulsion = 12480.943919 eV Total energy + Delta-G solvation = -2222.648873 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79428 -35.51563 -32.82828 -30.65609 -29.12430 -27.06533 -26.19728 -24.79673 -22.74479 -21.65207 -19.82543 -17.85238 -16.42493 -15.40442 -14.80813 -14.62940 -14.41091 -13.83930 -13.15212 -12.97730 -12.66398 -12.35934 -12.10930 -11.82956 -11.65114 -11.26993 -11.22778 -11.09027 -10.93817 -10.78443 -10.52692 -10.43329 -9.98959 -9.76280 -9.66085 -9.16392 -9.07611 -8.29317 -7.61530 -5.96175 -3.98328 3.35124 3.39411 3.41843 4.43932 4.61132 4.77947 4.81319 5.00723 5.14262 5.39531 5.52486 5.69303 5.75378 5.84001 5.89361 5.93247 6.00850 6.04396 6.09099 6.21152 6.25949 6.33850 6.39445 6.53113 6.53557 6.63235 6.75488 6.89997 7.08184 7.60474 7.67771 7.87745 7.97373 8.14150 8.48559 9.09035 9.64996 11.15184 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.007303 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.884374 B = 3832.912250 C = 4117.936635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.526 5.526 3 C 0.063 3.937 4 C 0.029 3.971 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.061 3.939 14 H 0.055 0.945 15 C -0.130 4.130 16 C -0.135 4.135 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.139 4.139 20 H 0.014 0.986 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.015 0.985 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -11.119 8.915 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.250 5.250 3 C -0.064 4.064 4 C -0.008 4.008 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.048 4.048 14 H 0.072 0.928 15 C -0.168 4.168 16 C -0.173 4.173 17 C -0.072 4.072 18 C -0.168 4.168 19 C -0.196 4.196 20 H 0.033 0.967 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.348 -11.287 8.303 14.207 hybrid contribution -0.004 1.499 0.757 1.679 sum 2.344 -9.788 9.060 13.542 Atomic orbital electron populations 1.22313 0.88431 1.00273 1.01049 1.62310 1.07045 1.15753 1.39906 1.22339 0.98662 0.85324 1.00027 1.19072 0.96794 0.93891 0.91032 1.21180 1.35084 0.97945 1.01850 0.92962 1.24981 0.95319 0.98360 0.95590 1.69962 1.40832 1.36464 1.06037 0.86682 0.79455 0.84828 0.77163 1.20251 1.21275 1.20342 1.23194 0.95617 0.93223 0.92767 0.92761 1.22935 0.96234 0.96112 1.01502 1.22936 0.96863 0.97770 0.99739 1.21839 0.93890 0.94969 0.96501 1.21354 0.99292 1.02861 0.93305 1.21793 0.98127 1.00737 0.98925 0.96698 0.90623 0.92646 0.96682 0.92054 0.95819 0.96604 0.92990 0.92344 0.89395 0.90747 0.91523 0.91093 0.94018 0.92514 0.93238 0.92874 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.14 60.06 0.55 1.03 16 2 N -0.53 -9.72 3.76 -233.91 -0.88 -10.60 16 3 C 0.06 1.37 4.58 -3.82 -0.02 1.35 16 4 C 0.03 0.78 4.90 -27.88 -0.14 0.64 16 5 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 0.94 2.64 -66.90 -0.18 0.77 16 14 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 15 C -0.13 -1.68 6.21 -25.93 -0.16 -1.84 16 16 C -0.14 -1.60 7.22 -25.92 -0.19 -1.79 16 17 C -0.07 -1.00 1.01 -153.69 -0.16 -1.16 16 18 C -0.11 -1.66 8.37 37.16 0.31 -1.35 16 19 C -0.14 -1.84 9.17 37.16 0.34 -1.50 16 20 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 21 H 0.08 1.45 6.57 -51.93 -0.34 1.11 16 22 H 0.05 0.83 7.01 -51.93 -0.36 0.46 16 23 H 0.01 0.33 8.11 -51.93 -0.42 -0.09 16 24 H 0.06 1.32 6.27 -51.93 -0.33 1.00 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.44 6.60 -51.93 -0.34 0.10 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.18 7.51 -51.93 -0.39 0.79 16 30 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 1.26 7.41 -51.93 -0.38 0.87 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 35 H 0.05 0.59 7.94 -51.93 -0.41 0.18 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.91 6.92 -51.93 -0.36 0.55 16 LS Contribution 288.27 15.07 4.34 4.34 Total: -1.00 -29.59 288.27 -7.49 -37.09 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.63 Total: -3.71 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.04 Total: -17.56 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.14 Total: -37.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.59 -7.49 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694308165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.579 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds