Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46972 * 2 1 4 4 C 1.53000 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.26200 * 54.68223 * 4 3 2 6 6 C 1.50810 * 109.28167 * 174.37369 * 4 3 2 7 7 C 1.52571 * 109.28693 * 212.14958 * 6 4 3 8 8 C 1.47095 * 114.32372 * 275.00538 * 7 6 4 9 9 C 1.54863 * 110.32348 * 62.79865 * 8 7 6 10 10 N 1.44572 * 109.59918 * 288.72896 * 9 8 7 11 11 C 1.36939 * 118.64462 * 270.71169 * 10 9 8 12 12 H 1.08000 * 120.00332 * 26.48242 * 11 10 9 13 13 C 1.38811 * 120.00188 * 206.49188 * 11 10 9 14 14 N 1.31626 * 119.99871 * 15.66172 * 13 11 10 15 15 Si 1.86797 * 120.00245 * 195.66693 * 13 11 10 16 16 H 1.48496 * 109.47015 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47663 * 119.99647 * 15 13 11 18 18 H 1.48502 * 109.46960 * 239.99785 * 15 13 11 19 19 C 1.47595 * 122.71382 * 90.72963 * 10 9 8 20 20 H 1.09002 * 109.47157 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46939 * 299.99599 * 1 2 3 22 22 H 1.08990 * 109.47246 * 60.00132 * 1 2 3 23 23 H 1.09003 * 109.46906 * 239.99915 * 2 1 3 24 24 H 1.09007 * 109.47020 * 119.99931 * 2 1 3 25 25 H 1.09003 * 109.47374 * 60.00201 * 3 2 1 26 26 H 1.08990 * 109.47027 * 300.00002 * 3 2 1 27 27 H 1.09001 * 109.52322 * 92.21473 * 6 4 3 28 28 H 1.09002 * 109.53854 * 332.09470 * 6 4 3 29 29 H 1.08998 * 108.51578 * 153.74715 * 7 6 4 30 30 H 1.09001 * 108.50778 * 36.25745 * 7 6 4 31 31 H 1.08994 * 109.32619 * 302.53320 * 8 7 6 32 32 H 1.09006 * 109.18237 * 182.97166 * 8 7 6 33 33 H 1.09006 * 109.44738 * 168.69333 * 9 8 7 34 34 H 1.08997 * 109.44994 * 48.77359 * 9 8 7 35 35 H 0.96998 * 119.99850 * 180.02562 * 14 13 11 36 36 H 1.09002 * 108.95212 * 78.55833 * 19 10 9 37 37 H 1.09007 * 108.94809 * 197.27579 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9292 0.8478 -0.8405 6 6 4.0679 2.8592 -0.1402 7 6 5.3849 2.8569 -0.9105 8 6 6.5734 2.6167 -0.0779 9 6 6.5036 1.2101 0.5662 10 7 5.4838 1.1960 1.5909 11 6 5.8337 1.5374 2.8700 12 1 6.6731 2.1945 3.0432 13 6 5.1097 1.0388 3.9443 14 7 4.2998 0.0153 3.7737 15 14 5.2846 1.8202 5.6319 16 1 6.2504 2.9459 5.5584 17 1 3.9639 2.3292 6.0811 18 1 5.7791 0.8065 6.5979 19 6 4.0811 0.8285 1.3153 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8901 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9563 -0.8899 27 1 4.2261 3.2888 0.8490 28 1 3.3312 3.4529 -0.6814 29 1 5.4981 3.8214 -1.4054 30 1 5.3365 2.0826 -1.6763 31 1 6.6222 3.3710 0.7073 32 1 7.4661 2.6849 -0.6997 33 1 7.4684 0.9663 1.0110 34 1 6.2601 0.4724 -0.1984 35 1 3.7936 -0.3329 4.5243 36 1 4.0055 -0.2571 1.2523 37 1 3.4555 1.1795 2.1361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705857141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -10.082650 kcal Electronic energy + Delta-G solvation = -15106.045514 eV Core-core repulsion = 12882.721282 eV Total energy + Delta-G solvation = -2223.324231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.19375 -34.89384 -33.55626 -31.28427 -30.54440 -26.66782 -25.37383 -24.10195 -22.38490 -20.72918 -19.58912 -18.64358 -16.56613 -15.25084 -14.53031 -14.49490 -13.99530 -13.52352 -13.23974 -12.89452 -12.54833 -12.20189 -11.96662 -11.56731 -11.33466 -11.16170 -10.95996 -10.75820 -10.55320 -10.33130 -10.20410 -10.09639 -9.85128 -9.71009 -9.58858 -9.35301 -9.25063 -8.31796 -6.55744 -5.70432 -3.13099 3.40075 3.48231 3.50317 4.56004 5.25189 5.36685 5.44107 5.50361 5.56656 5.66114 5.70941 5.86146 5.95688 6.04752 6.21442 6.26151 6.33681 6.37465 6.44967 6.47430 6.62127 6.66615 6.74042 6.80525 6.83303 6.92296 6.99111 7.02944 7.12038 7.26689 7.58558 7.81835 7.91340 8.55759 9.33105 10.01118 10.46267 11.36580 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.012842 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.306916 B = 2179.825827 C = 3081.634024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.113 4.113 5 H 0.051 0.949 6 C -0.101 4.101 7 C -0.101 4.101 8 C -0.146 4.146 9 C 0.158 3.842 10 N -0.592 5.592 11 C -0.254 4.254 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.904 5.904 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.291 1.291 19 C 0.189 3.811 20 H 0.047 0.953 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.030 0.970 35 H 0.251 0.749 36 H 0.022 0.978 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 2.591 -8.040 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.133 4.133 5 H 0.069 0.931 6 C -0.139 4.139 7 C -0.138 4.138 8 C -0.186 4.186 9 C 0.030 3.970 10 N -0.313 5.313 11 C -0.384 4.384 12 H 0.082 0.918 13 C -0.195 4.195 14 N -0.549 5.549 15 Si 0.728 3.272 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.218 1.218 19 C 0.064 3.936 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.347 2.482 -7.927 8.955 hybrid contribution 0.024 0.402 0.894 0.981 sum -3.323 2.885 -7.033 8.296 Atomic orbital electron populations 1.21769 0.96884 1.00869 1.01122 1.21571 0.94720 0.97680 1.02449 1.21626 0.95761 0.96163 1.00692 1.21696 0.94103 0.96441 1.01072 0.93099 1.21006 0.95260 0.96767 1.00872 1.20306 0.95909 0.99481 0.98121 1.21490 0.96021 1.02140 0.98980 1.20667 0.92591 0.92606 0.91115 1.43667 1.03354 1.79512 1.04729 1.19255 1.14286 1.22146 0.82685 0.91847 1.25004 1.00505 0.96389 0.97638 1.70085 1.31016 1.23501 1.30252 0.86297 0.77375 0.78822 0.84754 1.20355 1.21673 1.21834 1.21050 0.84574 0.95851 0.92135 0.93345 0.92957 0.93513 0.92818 0.90739 0.92297 0.93404 0.90998 0.94046 0.94517 0.93684 0.92311 0.93892 0.93974 0.95207 0.93879 0.95993 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.13 -2.03 5.73 -26.73 -0.15 -2.18 16 3 C -0.10 -1.76 4.47 -26.73 -0.12 -1.88 16 4 C -0.11 -2.17 1.99 -91.22 -0.18 -2.35 16 5 H 0.05 0.96 7.31 -51.93 -0.38 0.58 16 6 C -0.10 -1.87 5.02 -28.05 -0.14 -2.02 16 7 C -0.10 -1.74 5.15 -29.79 -0.15 -1.89 16 8 C -0.15 -2.72 5.74 -28.58 -0.16 -2.88 16 9 C 0.16 3.42 5.65 -4.09 -0.02 3.40 16 10 N -0.59 -14.88 2.27 -172.09 -0.39 -15.27 16 11 C -0.25 -7.00 9.44 -15.06 -0.14 -7.15 16 12 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 13 C 0.00 0.08 4.87 -17.43 -0.08 -0.01 16 14 N -0.90 -26.25 11.01 55.49 0.61 -25.64 16 15 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 C 0.19 4.51 3.33 -2.95 -0.01 4.50 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 1.37 7.01 -51.92 -0.36 1.01 16 25 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 26 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 27 H 0.07 1.53 7.48 -51.93 -0.39 1.14 16 28 H 0.04 0.68 7.64 -51.93 -0.40 0.28 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.75 7.36 -51.93 -0.38 0.37 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.92 7.99 -51.93 -0.41 0.51 16 34 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.02 0.57 7.43 -51.93 -0.39 0.19 16 37 H 0.07 1.98 6.08 -51.93 -0.32 1.66 16 LS Contribution 281.03 15.07 4.24 4.24 Total: -1.00 -28.35 281.03 -8.16 -36.51 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.78 Total: -2.66 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.80 Total: -14.11 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.22 Total: -40.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.35 -8.16 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705857141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.430 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds