Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46972 * 2 1 4 4 C 1.53000 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.26200 * 54.68223 * 4 3 2 6 6 C 1.50810 * 109.28167 * 174.37369 * 4 3 2 7 7 C 1.52571 * 109.28693 * 212.14958 * 6 4 3 8 8 C 1.47095 * 114.32372 * 275.00538 * 7 6 4 9 9 C 1.54863 * 110.32348 * 62.79865 * 8 7 6 10 10 N 1.44572 * 109.59918 * 288.72896 * 9 8 7 11 11 C 1.36939 * 118.64462 * 270.71169 * 10 9 8 12 12 H 1.08000 * 120.00332 * 26.48242 * 11 10 9 13 13 C 1.38811 * 120.00188 * 206.49188 * 11 10 9 14 14 N 1.31626 * 119.99871 * 15.66172 * 13 11 10 15 15 Si 1.86797 * 120.00245 * 195.66693 * 13 11 10 16 16 H 1.48496 * 109.47015 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47663 * 119.99647 * 15 13 11 18 18 H 1.48502 * 109.46960 * 239.99785 * 15 13 11 19 19 C 1.47595 * 122.71382 * 90.72963 * 10 9 8 20 20 H 1.09002 * 109.47157 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46939 * 299.99599 * 1 2 3 22 22 H 1.08990 * 109.47246 * 60.00132 * 1 2 3 23 23 H 1.09003 * 109.46906 * 239.99915 * 2 1 3 24 24 H 1.09007 * 109.47020 * 119.99931 * 2 1 3 25 25 H 1.09003 * 109.47374 * 60.00201 * 3 2 1 26 26 H 1.08990 * 109.47027 * 300.00002 * 3 2 1 27 27 H 1.09001 * 109.52322 * 92.21473 * 6 4 3 28 28 H 1.09002 * 109.53854 * 332.09470 * 6 4 3 29 29 H 1.08998 * 108.51578 * 153.74715 * 7 6 4 30 30 H 1.09001 * 108.50778 * 36.25745 * 7 6 4 31 31 H 1.08994 * 109.32619 * 302.53320 * 8 7 6 32 32 H 1.09006 * 109.18237 * 182.97166 * 8 7 6 33 33 H 1.09006 * 109.44738 * 168.69333 * 9 8 7 34 34 H 1.08997 * 109.44994 * 48.77359 * 9 8 7 35 35 H 0.96998 * 119.99850 * 180.02562 * 14 13 11 36 36 H 1.09002 * 108.95212 * 78.55833 * 19 10 9 37 37 H 1.09007 * 108.94809 * 197.27579 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9292 0.8478 -0.8405 6 6 4.0679 2.8592 -0.1402 7 6 5.3849 2.8569 -0.9105 8 6 6.5734 2.6167 -0.0779 9 6 6.5036 1.2101 0.5662 10 7 5.4838 1.1960 1.5909 11 6 5.8337 1.5374 2.8700 12 1 6.6731 2.1945 3.0432 13 6 5.1097 1.0388 3.9443 14 7 4.2998 0.0153 3.7737 15 14 5.2846 1.8202 5.6319 16 1 6.2504 2.9459 5.5584 17 1 3.9639 2.3292 6.0811 18 1 5.7791 0.8065 6.5979 19 6 4.0811 0.8285 1.3153 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8901 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9563 -0.8899 27 1 4.2261 3.2888 0.8490 28 1 3.3312 3.4529 -0.6814 29 1 5.4981 3.8214 -1.4054 30 1 5.3365 2.0826 -1.6763 31 1 6.6222 3.3710 0.7073 32 1 7.4661 2.6849 -0.6997 33 1 7.4684 0.9663 1.0110 34 1 6.2601 0.4724 -0.1984 35 1 3.7936 -0.3329 4.5243 36 1 4.0055 -0.2571 1.2523 37 1 3.4555 1.1795 2.1361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705857141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -24.502818 kcal Electronic energy + Delta-G solvation = -15106.670819 eV Core-core repulsion = 12882.721282 eV Total energy + Delta-G solvation = -2223.949537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83698 -36.41892 -35.33710 -32.85862 -32.39788 -28.25508 -27.19646 -25.80017 -24.04445 -22.17762 -21.09366 -20.36099 -18.56514 -17.05055 -16.16371 -16.07698 -15.74067 -15.08014 -14.89059 -14.29333 -14.14332 -13.75076 -13.65526 -13.01229 -12.93272 -12.81828 -12.73501 -12.50945 -12.25151 -11.98232 -11.87655 -11.59843 -11.48715 -11.38725 -11.15685 -11.02897 -10.80332 -10.40259 -8.60575 -7.82752 -5.28507 1.43252 1.45300 1.55451 2.51940 3.29171 3.73921 3.87209 4.04840 4.21565 4.25430 4.30947 4.48315 4.56680 4.61893 4.73869 4.91306 4.92322 4.99070 5.01822 5.04911 5.12088 5.24349 5.28628 5.33255 5.38182 5.39230 5.47499 5.55314 5.58357 5.65527 5.73863 5.81271 5.90008 6.43901 7.21896 8.00798 8.38724 9.21561 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.012842 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.306916 B = 2179.825827 C = 3081.634024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.103 4.103 5 H 0.060 0.940 6 C -0.098 4.098 7 C -0.102 4.102 8 C -0.133 4.133 9 C 0.151 3.849 10 N -0.607 5.607 11 C -0.262 4.262 12 H 0.061 0.939 13 C -0.049 4.049 14 N -0.933 5.933 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.291 1.291 18 H -0.292 1.292 19 C 0.205 3.795 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.247 0.753 36 H -0.013 1.013 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 3.837 -9.851 11.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.123 4.123 5 H 0.078 0.922 6 C -0.136 4.136 7 C -0.139 4.139 8 C -0.173 4.173 9 C 0.024 3.976 10 N -0.329 5.329 11 C -0.392 4.392 12 H 0.079 0.921 13 C -0.245 4.245 14 N -0.580 5.580 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.218 1.218 18 H -0.219 1.219 19 C 0.080 3.920 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.005 0.995 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.528 3.744 -9.764 11.036 hybrid contribution 0.141 -0.023 1.428 1.435 sum -3.387 3.720 -8.336 9.736 Atomic orbital electron populations 1.21723 0.94655 1.01851 1.01897 1.21526 0.96717 0.96902 1.01144 1.21601 0.93947 0.96822 1.01385 1.21561 0.95731 0.96894 0.98111 0.92202 1.20976 0.96991 0.95941 0.99671 1.20302 0.94242 1.01485 0.97887 1.21332 0.98353 0.98815 0.98834 1.20864 0.91149 0.95017 0.90577 1.43917 1.04550 1.79613 1.04863 1.19517 1.14022 1.21592 0.84107 0.92117 1.25719 1.00743 0.97016 1.00983 1.70247 1.32024 1.24836 1.30865 0.85321 0.77243 0.78059 0.80564 1.19272 1.21771 1.21936 1.20756 0.83797 0.93900 0.93546 0.92358 0.93525 0.91330 0.91764 0.94427 0.93822 0.90243 0.94410 0.91207 0.91784 0.92326 0.94267 0.90870 0.94964 0.94394 0.94383 0.99470 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.13 -3.94 5.73 30.59 0.18 -3.77 16 3 C -0.10 -3.23 4.47 30.59 0.14 -3.09 16 4 C -0.10 -3.87 1.99 -11.18 -0.02 -3.89 16 5 H 0.06 2.15 7.31 -2.39 -0.02 2.13 16 6 C -0.10 -3.43 5.02 29.74 0.15 -3.28 16 7 C -0.10 -3.18 5.15 28.62 0.15 -3.03 16 8 C -0.13 -4.68 5.74 29.39 0.17 -4.52 16 9 C 0.15 6.45 5.65 87.38 0.49 6.94 16 10 N -0.61 -31.20 2.27 -698.38 -1.59 -32.79 16 11 C -0.26 -14.79 9.44 84.03 0.79 -13.99 16 12 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 13 C -0.05 -2.83 4.87 84.86 0.41 -2.42 16 14 N -0.93 -56.40 11.01 21.65 0.24 -56.17 16 15 Si 0.96 46.16 29.58 68.60 2.03 48.19 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 C 0.20 10.12 3.33 86.49 0.29 10.41 16 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.44 7.01 -2.38 -0.02 1.43 16 25 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 26 H 0.08 2.11 7.95 -2.39 -0.02 2.09 16 27 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 28 H 0.07 2.05 7.64 -2.39 -0.02 2.03 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.71 7.36 -2.39 -0.02 1.69 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.03 1.41 7.99 -2.38 -0.02 1.39 16 34 H 0.04 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H -0.01 -0.70 7.43 -2.39 -0.02 -0.72 16 37 H 0.04 2.09 6.08 -2.38 -0.01 2.07 16 Total: -1.00 -62.72 281.03 5.13 -57.59 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.99 Total: 6.74 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.46 Total: -23.57 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.35 Total: -88.95 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -62.72 5.13 -57.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705857141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.089 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds