Wall clock time and date at job start Mon Mar 30 2020 03:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 H 1.08993 * 109.46808 * 195.40661 * 3 2 1 5 5 C 1.50702 * 109.46893 * 315.41070 * 3 2 1 6 6 H 1.08005 * 119.99671 * 119.99672 * 5 3 2 7 7 C 1.37872 * 120.00155 * 299.99956 * 5 3 2 8 8 N 1.31515 * 120.00160 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99872 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47195 * 90.00061 * 9 7 5 11 11 H 1.48503 * 109.47220 * 209.99980 * 9 7 5 12 12 H 1.48498 * 109.47038 * 330.00302 * 9 7 5 13 13 N 1.46904 * 109.47025 * 75.40953 * 3 2 1 14 14 C 1.46900 * 110.99997 * 303.89048 * 13 3 2 15 15 C 1.52998 * 109.47101 * 202.39096 * 14 13 3 16 16 C 1.46901 * 110.99794 * 67.84315 * 13 3 2 17 17 C 1.52994 * 109.47022 * 75.40847 * 16 13 3 18 18 C 1.53002 * 117.49703 * 242.33740 * 17 16 13 19 19 C 1.53002 * 60.00150 * 252.51006 * 18 17 16 20 20 H 1.08995 * 109.47732 * 166.66631 * 1 2 3 21 21 H 1.09008 * 109.47244 * 286.66893 * 1 2 3 22 22 H 1.09003 * 109.47154 * 46.66477 * 1 2 3 23 23 H 1.08996 * 109.47301 * 239.99958 * 2 1 3 24 24 H 1.08998 * 109.46923 * 119.99759 * 2 1 3 25 25 H 0.96995 * 120.00083 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47238 * 322.38452 * 14 13 3 27 27 H 1.09003 * 109.47197 * 82.38521 * 14 13 3 28 28 H 1.08997 * 109.47108 * 181.13451 * 15 14 13 29 29 H 1.09006 * 109.46697 * 301.12929 * 15 14 13 30 30 H 1.08998 * 109.47643 * 61.12532 * 15 14 13 31 31 H 1.08999 * 109.46742 * 195.40530 * 16 13 3 32 32 H 1.09000 * 109.46964 * 315.40546 * 16 13 3 33 33 H 1.09003 * 115.55269 * 28.04822 * 17 16 13 34 34 H 1.08997 * 117.49847 * 359.97438 * 18 17 16 35 35 H 1.09004 * 117.49850 * 145.02129 * 18 17 16 36 36 H 1.09005 * 117.49976 * 252.51255 * 19 18 17 37 37 H 1.09000 * 117.49577 * 107.48816 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.0952 1.4548 -0.2730 5 6 1.2535 2.2534 -0.9975 6 1 0.6871 3.1122 -0.6685 7 6 1.2568 1.8989 -2.3298 8 7 0.5708 2.6068 -3.2004 9 14 2.2358 0.4131 -2.8985 10 1 1.3791 -0.7982 -2.8346 11 1 2.6899 0.6249 -4.2965 12 1 3.4167 0.2313 -2.0167 13 7 1.8743 2.0205 1.3404 14 6 0.4754 1.9365 1.7806 15 6 0.2160 2.9902 2.8592 16 6 2.7704 1.3725 2.3075 17 6 4.1994 1.8761 2.0955 18 6 5.2571 0.8488 1.6872 19 6 5.2620 1.4307 3.1022 20 1 -0.3634 -0.9999 -0.2370 21 1 -0.3634 0.2948 0.9845 22 1 -0.3633 0.7053 -0.7475 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.5729 2.3572 -4.1377 26 1 -0.1841 2.1159 0.9315 27 1 0.2815 0.9442 2.1879 28 1 -0.8165 2.9146 3.2002 29 1 0.8894 2.8229 3.6998 30 1 0.3904 3.9837 2.4461 31 1 2.4468 1.6131 3.3202 32 1 2.7405 0.2925 2.1634 33 1 4.2874 2.8809 1.6823 34 1 4.9350 -0.1859 1.5700 35 1 6.0412 1.1776 1.0050 36 1 6.0493 2.1424 3.3510 37 1 4.9430 0.7789 3.9155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068946948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:36 Heat of formation + Delta-G solvation = 41.139678 kcal Electronic energy + Delta-G solvation = -15200.108917 eV Core-core repulsion = 12979.005852 eV Total energy + Delta-G solvation = -2221.103064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.63072 -36.37101 -33.01074 -31.31247 -29.95978 -27.21207 -25.09924 -23.58711 -22.08796 -20.74040 -20.45725 -18.87222 -16.46225 -15.68110 -15.37355 -14.47566 -13.93817 -13.76316 -13.37161 -13.10790 -12.65498 -12.29357 -12.23055 -11.68890 -11.33818 -11.28880 -10.96332 -10.88606 -10.62073 -10.38153 -10.31695 -10.08225 -9.82836 -9.72213 -9.40205 -9.29814 -8.95305 -8.50616 -7.20559 -6.03905 -3.98543 3.29649 3.39505 3.40366 4.11588 4.43491 4.71394 5.16447 5.24476 5.28459 5.44110 5.70748 5.82025 5.83213 5.91514 5.97873 6.05916 6.08942 6.17614 6.21820 6.24283 6.32229 6.36055 6.39598 6.64015 6.73171 6.79439 6.85236 6.90086 7.01708 7.19958 7.46376 7.72653 8.04725 8.18989 8.71955 9.04343 9.59437 11.08937 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.012959 C = 0.010332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.393656 B = 2160.146227 C = 2709.439917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.160 4.160 3 C 0.183 3.817 4 H 0.042 0.958 5 C -0.492 4.492 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.900 5.900 9 Si 0.877 3.123 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.517 5.517 14 C 0.048 3.952 15 C -0.146 4.146 16 C 0.077 3.923 17 C -0.130 4.130 18 C -0.185 4.185 19 C -0.187 4.187 20 H 0.021 0.979 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.044 0.956 24 H 0.036 0.964 25 H 0.263 0.737 26 H 0.098 0.902 27 H 0.027 0.973 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -3.874 10.472 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.199 4.199 3 C 0.075 3.925 4 H 0.060 0.940 5 C -0.530 4.530 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.539 5.539 9 Si 0.708 3.292 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.240 5.240 14 C -0.080 4.080 15 C -0.204 4.204 16 C -0.051 4.051 17 C -0.148 4.148 18 C -0.222 4.222 19 C -0.225 4.225 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.109 0.891 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.141 -3.347 10.249 11.550 hybrid contribution 0.419 -1.866 -0.472 1.969 sum 4.559 -5.213 9.778 11.982 Atomic orbital electron populations 1.22405 0.95910 1.00248 1.03577 1.22452 0.97411 1.01262 0.98759 1.19860 0.97270 0.88809 0.86525 0.94036 1.20871 1.28833 1.12804 0.90478 0.90009 1.24843 0.95073 0.96331 0.96634 1.69880 1.41716 1.39641 1.02682 0.87013 0.81307 0.83758 0.77138 1.20640 1.22531 1.19302 1.62114 1.04237 1.55316 1.02285 1.22493 0.91450 0.95460 0.98578 1.21848 0.99383 1.00725 0.98464 1.21717 0.91271 0.95913 0.96233 1.22330 0.90646 0.99798 1.02040 1.22985 1.02812 0.98933 0.97475 1.22923 1.02512 1.04105 0.92949 0.96029 0.92186 0.89132 0.93793 0.94506 0.92741 0.88401 0.95500 0.93559 0.93924 0.92195 0.91717 0.95023 0.86959 0.89392 0.89231 0.89263 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.25 37.16 0.31 -3.15 16 2 C -0.16 -3.48 4.74 -26.73 -0.13 -3.61 16 3 C 0.18 4.25 1.81 -68.86 -0.12 4.13 16 4 H 0.04 1.03 6.53 -51.93 -0.34 0.69 16 5 C -0.49 -13.29 6.52 -34.44 -0.22 -13.51 16 6 H 0.08 2.43 7.45 -52.48 -0.39 2.04 16 7 C 0.07 2.04 4.86 -17.82 -0.09 1.95 16 8 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.88 21.92 24.20 -169.99 -4.11 17.81 16 10 H -0.28 -6.88 7.02 56.52 0.40 -6.48 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.48 6.46 56.52 0.36 -6.11 16 13 N -0.52 -10.48 4.31 -228.04 -0.98 -11.46 16 14 C 0.05 0.89 3.47 -3.82 -0.01 0.88 16 15 C -0.15 -2.33 10.06 37.16 0.37 -1.96 16 16 C 0.08 1.33 4.96 -3.83 -0.02 1.31 16 17 C -0.13 -2.10 5.20 -90.62 -0.47 -2.57 16 18 C -0.18 -2.77 10.18 -26.73 -0.27 -3.04 16 19 C -0.19 -2.46 10.25 -26.73 -0.27 -2.74 16 20 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 21 H 0.06 1.13 4.25 -51.92 -0.22 0.91 16 22 H 0.09 2.17 5.76 -51.93 -0.30 1.87 16 23 H 0.04 1.01 3.90 -51.93 -0.20 0.81 16 24 H 0.04 0.73 5.98 -51.93 -0.31 0.42 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.10 2.07 5.07 -51.93 -0.26 1.81 16 27 H 0.03 0.48 6.03 -51.93 -0.31 0.17 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.62 6.90 -51.93 -0.36 0.27 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 32 H 0.03 0.56 5.64 -51.93 -0.29 0.27 16 33 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -28.32 270.84 -7.06 -35.39 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.89 Total: 2.72 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -0.93 Total: -22.30 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.21 Total: -37.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.11 Total: 17.81 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.32 -7.06 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068946948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.525 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds