Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 H 1.09004 * 109.47141 * 54.99895 * 3 2 1 5 5 C 1.50701 * 109.47088 * 174.99774 * 3 2 1 6 6 H 1.08001 * 119.99787 * 114.52464 * 5 3 2 7 7 C 1.37878 * 120.00303 * 294.52226 * 5 3 2 8 8 N 1.31505 * 120.00052 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99633 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.46787 * 90.00320 * 9 7 5 11 11 H 1.48498 * 109.46897 * 209.99702 * 9 7 5 12 12 H 1.48495 * 109.47445 * 329.99778 * 9 7 5 13 13 N 1.46895 * 109.47123 * 294.99869 * 3 2 1 14 14 C 1.47481 * 111.00190 * 173.28885 * 13 3 2 15 15 C 1.53516 * 87.93318 * 221.29837 * 14 13 3 16 16 C 1.52992 * 114.34228 * 139.68727 * 15 14 13 17 17 C 1.52999 * 109.47692 * 86.07369 * 16 15 14 18 18 C 1.53005 * 109.47193 * 206.07434 * 16 15 14 19 19 C 1.47480 * 111.00059 * 77.31644 * 13 3 2 20 20 H 1.08997 * 109.47327 * 299.99773 * 1 2 3 21 21 H 1.09000 * 109.47515 * 60.00460 * 1 2 3 22 22 H 1.09006 * 109.47270 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47042 * 120.00098 * 2 1 3 24 24 H 1.09000 * 109.47308 * 239.99271 * 2 1 3 25 25 H 0.96998 * 120.00348 * 180.02562 * 8 7 5 26 26 H 1.08998 * 113.47306 * 336.06662 * 14 13 3 27 27 H 1.09000 * 113.47041 * 106.52983 * 14 13 3 28 28 H 1.08999 * 114.16651 * 272.37962 * 15 14 13 29 29 H 1.09007 * 109.46996 * 326.07101 * 16 15 14 30 30 H 1.08995 * 109.46673 * 59.99663 * 17 16 15 31 31 H 1.09000 * 109.47307 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47243 * 300.00182 * 17 16 15 33 33 H 1.09000 * 109.46660 * 59.99831 * 18 16 15 34 34 H 1.09000 * 109.47437 * 179.97438 * 18 16 15 35 35 H 1.08995 * 109.46983 * 300.00221 * 18 16 15 36 36 H 1.08998 * 113.48203 * 253.46834 * 19 13 3 37 37 H 1.09004 * 113.47498 * 23.88408 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1505 1.8082 -0.6907 7 6 4.1391 0.9813 1.2772 8 7 5.4497 0.9823 1.3850 9 14 3.0864 0.3511 2.6858 10 1 2.8544 -1.1060 2.5170 11 1 3.7850 0.5951 3.9733 12 1 1.7833 1.0631 2.6870 13 7 1.6514 2.0992 -1.2552 14 6 1.9855 3.5354 -1.2258 15 6 0.6340 3.8067 -1.9014 16 6 -0.1040 5.0348 -1.3649 17 6 0.3797 6.2840 -2.1041 18 6 -1.6083 4.8624 -1.5851 19 6 0.2287 2.4868 -1.2305 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 5.8699 0.6563 2.1962 26 1 2.0568 3.9440 -0.2178 27 1 2.8419 3.7947 -1.8481 28 1 0.6627 3.7635 -2.9902 29 1 0.0971 5.1426 -0.2990 30 1 0.1786 6.1761 -3.1699 31 1 -0.1464 7.1588 -1.7221 32 1 1.4514 6.4069 -1.9472 33 1 -1.9529 3.9725 -1.0584 34 1 -2.1342 5.7372 -1.2024 35 1 -1.8094 4.7546 -2.6509 36 1 -0.4038 1.8577 -1.8568 37 1 -0.1691 2.6147 -0.2237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = 22.326669 kcal Electronic energy + Delta-G solvation = -14904.025142 eV Core-core repulsion = 12682.106284 eV Total energy + Delta-G solvation = -2221.918858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86240 -35.47302 -33.29437 -31.88797 -28.63508 -27.21216 -25.83295 -24.61301 -22.71946 -21.02926 -19.39391 -18.94596 -16.82613 -15.60660 -14.99362 -14.54032 -14.19225 -13.51100 -13.32303 -12.89259 -12.66323 -12.28225 -12.17584 -12.15832 -11.91472 -11.63658 -11.40852 -11.06093 -10.99144 -10.78856 -10.50663 -10.22680 -9.90165 -9.78697 -9.62916 -9.20495 -8.98998 -8.54489 -7.85982 -6.07374 -4.05987 3.25859 3.35450 3.36714 4.39296 4.76915 4.83074 5.01417 5.22209 5.26597 5.52119 5.59863 5.72496 5.74930 5.89003 5.91297 5.93505 5.97104 6.04780 6.11739 6.19466 6.20773 6.27431 6.39454 6.41194 6.45938 6.59163 6.65835 6.70226 6.85628 6.88227 7.13851 7.44713 7.80026 8.00973 8.62609 9.00801 9.54974 11.05709 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.009511 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.068823 B = 2943.385749 C = 3299.040934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C 0.154 3.846 4 H 0.006 0.994 5 C -0.505 4.505 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.266 1.266 13 N -0.457 5.457 14 C 0.027 3.973 15 C -0.122 4.122 16 C -0.087 4.087 17 C -0.143 4.143 18 C -0.143 4.143 19 C 0.001 3.999 20 H 0.040 0.960 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.264 0.736 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 6.097 -4.131 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.156 4.156 3 C 0.046 3.954 4 H 0.024 0.976 5 C -0.543 4.543 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.191 1.191 13 N -0.180 5.180 14 C -0.102 4.102 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.200 4.200 18 C -0.201 4.201 19 C -0.128 4.128 20 H 0.059 0.941 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.066 5.572 -4.505 14.033 hybrid contribution -0.639 -0.106 1.691 1.811 sum -12.705 5.465 -2.814 14.114 Atomic orbital electron populations 1.22221 0.98387 1.00278 1.01490 1.21816 0.92990 0.99561 1.01258 1.20276 0.97104 0.91105 0.86954 0.97638 1.20930 0.88754 1.42233 1.02389 0.90247 1.24924 0.94752 0.95347 0.98052 1.69882 1.08698 1.47275 1.27886 0.86949 0.80861 0.79587 0.81847 1.20295 1.22125 1.19122 1.68811 1.03658 1.10453 1.35033 1.23497 0.96254 0.90877 0.99588 1.22954 0.97200 0.93754 1.00140 1.21090 0.94929 0.94668 0.99939 1.21785 1.01309 0.96876 1.00070 1.21787 0.95592 1.01191 1.01488 1.23921 0.94619 0.94979 0.99285 0.94104 0.91552 0.94228 0.93271 0.91609 0.92647 0.91785 0.90879 0.88921 0.91394 0.92925 0.93274 0.92467 0.92687 0.93269 0.92872 0.90832 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.84 37.16 0.33 -2.72 16 2 C -0.12 -2.66 5.18 -26.73 -0.14 -2.79 16 3 C 0.15 3.70 0.92 -68.87 -0.06 3.64 16 4 H 0.01 0.15 6.23 -51.93 -0.32 -0.17 16 5 C -0.50 -14.39 8.68 -34.44 -0.30 -14.69 16 6 H 0.08 2.49 8.02 -52.49 -0.42 2.07 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 9 Si 0.88 22.09 24.68 -169.99 -4.20 17.89 16 10 H -0.28 -6.80 6.86 56.52 0.39 -6.42 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.45 6.39 56.52 0.36 -6.09 16 13 N -0.46 -9.66 6.12 -237.98 -1.46 -11.12 16 14 C 0.03 0.52 6.63 -7.54 -0.05 0.47 16 15 C -0.12 -1.84 3.44 -90.09 -0.31 -2.15 16 16 C -0.09 -1.11 2.74 -90.62 -0.25 -1.36 16 17 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 18 C -0.14 -1.58 9.00 37.16 0.33 -1.25 16 19 C 0.00 0.02 3.97 -7.54 -0.03 -0.01 16 20 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.07 1.12 4.60 -51.93 -0.24 0.88 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 1.16 4.00 -51.93 -0.21 0.96 16 24 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.06 1.29 7.63 -51.93 -0.40 0.89 16 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.62 7.48 -51.93 -0.39 0.23 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 37 H 0.06 1.01 7.24 -51.93 -0.38 0.64 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -29.89 278.74 -7.44 -37.33 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.53 Total: -1.18 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.23 Total: -20.16 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.68 Total: -38.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.20 Total: 17.89 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.89 -7.44 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.653 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds