Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 H 1.09004 * 109.47141 * 54.99895 * 3 2 1 5 5 C 1.50701 * 109.47088 * 174.99774 * 3 2 1 6 6 H 1.08001 * 119.99787 * 114.52464 * 5 3 2 7 7 C 1.37878 * 120.00303 * 294.52226 * 5 3 2 8 8 N 1.31505 * 120.00052 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99633 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.46787 * 90.00320 * 9 7 5 11 11 H 1.48498 * 109.46897 * 209.99702 * 9 7 5 12 12 H 1.48495 * 109.47445 * 329.99778 * 9 7 5 13 13 N 1.46895 * 109.47123 * 294.99869 * 3 2 1 14 14 C 1.47481 * 111.00190 * 173.28885 * 13 3 2 15 15 C 1.53516 * 87.93318 * 221.29837 * 14 13 3 16 16 C 1.52992 * 114.34228 * 139.68727 * 15 14 13 17 17 C 1.52999 * 109.47692 * 86.07369 * 16 15 14 18 18 C 1.53005 * 109.47193 * 206.07434 * 16 15 14 19 19 C 1.47480 * 111.00059 * 77.31644 * 13 3 2 20 20 H 1.08997 * 109.47327 * 299.99773 * 1 2 3 21 21 H 1.09000 * 109.47515 * 60.00460 * 1 2 3 22 22 H 1.09006 * 109.47270 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47042 * 120.00098 * 2 1 3 24 24 H 1.09000 * 109.47308 * 239.99271 * 2 1 3 25 25 H 0.96998 * 120.00348 * 180.02562 * 8 7 5 26 26 H 1.08998 * 113.47306 * 336.06662 * 14 13 3 27 27 H 1.09000 * 113.47041 * 106.52983 * 14 13 3 28 28 H 1.08999 * 114.16651 * 272.37962 * 15 14 13 29 29 H 1.09007 * 109.46996 * 326.07101 * 16 15 14 30 30 H 1.08995 * 109.46673 * 59.99663 * 17 16 15 31 31 H 1.09000 * 109.47307 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47243 * 300.00182 * 17 16 15 33 33 H 1.09000 * 109.46660 * 59.99831 * 18 16 15 34 34 H 1.09000 * 109.47437 * 179.97438 * 18 16 15 35 35 H 1.08995 * 109.46983 * 300.00221 * 18 16 15 36 36 H 1.08998 * 113.48203 * 253.46834 * 19 13 3 37 37 H 1.09004 * 113.47498 * 23.88408 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1505 1.8082 -0.6907 7 6 4.1391 0.9813 1.2772 8 7 5.4497 0.9823 1.3850 9 14 3.0864 0.3511 2.6858 10 1 2.8544 -1.1060 2.5170 11 1 3.7850 0.5951 3.9733 12 1 1.7833 1.0631 2.6870 13 7 1.6514 2.0992 -1.2552 14 6 1.9855 3.5354 -1.2258 15 6 0.6340 3.8067 -1.9014 16 6 -0.1040 5.0348 -1.3649 17 6 0.3797 6.2840 -2.1041 18 6 -1.6083 4.8624 -1.5851 19 6 0.2287 2.4868 -1.2305 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 5.8699 0.6563 2.1962 26 1 2.0568 3.9440 -0.2178 27 1 2.8419 3.7947 -1.8481 28 1 0.6627 3.7635 -2.9902 29 1 0.0971 5.1426 -0.2990 30 1 0.1786 6.1761 -3.1699 31 1 -0.1464 7.1588 -1.7221 32 1 1.4514 6.4069 -1.9472 33 1 -1.9529 3.9725 -1.0584 34 1 -2.1342 5.7372 -1.2024 35 1 -1.8094 4.7546 -2.6509 36 1 -0.4038 1.8577 -1.8568 37 1 -0.1691 2.6147 -0.2237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = 1.399109 kcal Electronic energy + Delta-G solvation = -14904.932629 eV Core-core repulsion = 12682.106284 eV Total energy + Delta-G solvation = -2222.826345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.35886 -36.91035 -34.90161 -33.83987 -30.34954 -28.16027 -27.45983 -26.09281 -24.48527 -22.37899 -21.07452 -20.26670 -18.93039 -17.31491 -16.60159 -16.08096 -15.49334 -14.97992 -14.91007 -14.55375 -14.01448 -13.87350 -13.60609 -13.59771 -13.17916 -13.00296 -12.87201 -12.63267 -12.35880 -12.19118 -11.95510 -11.69608 -11.59316 -11.38844 -11.14903 -10.94877 -10.88938 -10.56903 -9.52230 -8.33735 -6.37201 1.25753 1.28901 1.39454 2.26960 2.99694 3.34706 3.53134 3.85414 4.20461 4.27199 4.33197 4.38282 4.48604 4.51236 4.59425 4.67690 4.75617 4.83249 4.89150 4.91576 4.92876 5.03587 5.07151 5.10260 5.13195 5.28073 5.30922 5.35077 5.38257 5.52324 5.61541 5.70412 5.78928 6.09347 6.61227 6.68971 7.28093 8.83318 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.009511 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.068823 B = 2943.385749 C = 3299.040934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C 0.161 3.839 4 H -0.001 1.001 5 C -0.510 4.510 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.264 1.264 11 H -0.292 1.292 12 H -0.248 1.248 13 N -0.481 5.481 14 C 0.017 3.983 15 C -0.095 4.095 16 C -0.086 4.086 17 C -0.141 4.141 18 C -0.139 4.139 19 C 0.006 3.994 20 H 0.047 0.953 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 6.198 -4.126 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.052 3.948 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.769 3.231 10 H -0.190 1.190 11 H -0.219 1.219 12 H -0.172 1.172 13 N -0.203 5.203 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.199 4.199 18 C -0.196 4.196 19 C -0.122 4.122 20 H 0.066 0.934 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.434 5.680 -4.519 17.056 hybrid contribution 0.494 -0.076 1.584 1.661 sum -14.940 5.604 -2.935 16.224 Atomic orbital electron populations 1.22139 0.94568 1.02251 1.02538 1.21735 0.96402 0.97576 1.00079 1.20082 0.93813 0.92700 0.88189 0.98349 1.21184 0.91333 1.41327 1.00986 0.95046 1.25795 0.95930 0.95683 1.01038 1.70038 1.10805 1.48998 1.28993 0.85894 0.79642 0.79647 0.77952 1.18969 1.21907 1.17190 1.68764 1.06917 1.11330 1.33319 1.23532 0.98388 0.90274 0.99057 1.22849 0.93860 0.94324 1.00343 1.21075 0.96214 0.93922 0.99250 1.21772 1.00652 0.96785 1.00666 1.21754 0.93695 1.01879 1.02313 1.23965 0.92211 0.95995 1.00055 0.93426 0.90131 0.91866 0.94565 0.92774 0.92479 0.93416 0.92561 0.87794 0.92593 0.91826 0.91671 0.93776 0.92798 0.91818 0.91814 0.88724 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 8.84 71.98 0.64 -4.57 16 2 C -0.12 -5.21 5.18 30.59 0.16 -5.05 16 3 C 0.16 7.74 0.92 44.17 0.04 7.78 16 4 H 0.00 -0.05 6.23 -2.38 -0.01 -0.06 16 5 C -0.51 -30.22 8.68 25.60 0.22 -29.99 16 6 H 0.03 2.10 8.02 -2.91 -0.02 2.07 16 7 C 0.01 0.77 5.45 84.66 0.46 1.23 16 8 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 9 Si 0.94 45.73 24.68 68.60 1.69 47.43 16 10 H -0.26 -12.22 6.86 99.48 0.68 -11.54 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 12 H -0.25 -11.20 6.39 99.48 0.64 -10.56 16 13 N -0.48 -20.20 6.12 -906.83 -5.55 -25.75 16 14 C 0.02 0.66 6.63 83.58 0.55 1.21 16 15 C -0.10 -2.70 3.44 -10.45 -0.04 -2.74 16 16 C -0.09 -1.97 2.74 -10.80 -0.03 -2.00 16 17 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 18 C -0.14 -2.54 9.00 71.98 0.65 -1.89 16 19 C 0.01 0.20 3.97 83.58 0.33 0.53 16 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.08 2.41 4.60 -2.39 -0.01 2.40 16 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.04 1.65 4.00 -2.38 -0.01 1.64 16 24 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.05 1.99 7.63 -2.39 -0.02 1.97 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.06 1.44 7.91 -2.38 -0.02 1.42 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.00 7.48 -2.39 -0.02 0.99 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 2.61 6.73 -2.39 -0.02 2.59 16 37 H 0.06 1.94 7.24 -2.38 -0.02 1.92 16 Total: -1.00 -66.77 278.74 1.01 -65.77 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.91 Total: 10.64 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 3.65 Total: -37.70 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -5.25 Total: -86.14 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.69 Total: 47.43 kcal Total: -66.77 1.01 -65.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.165 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds