Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.52997 * 109.46940 * 120.00212 * 2 1 3 5 5 N 1.46899 * 109.47353 * 90.28981 * 4 2 1 6 6 C 1.46841 * 110.99525 * 60.45979 * 5 4 2 7 7 C 1.53039 * 109.51705 * 174.15370 * 6 5 4 8 8 C 1.53117 * 109.27671 * 59.18561 * 7 6 5 9 9 C 1.53113 * 109.15893 * 302.34300 * 8 7 6 10 10 C 1.46853 * 110.99537 * 296.25605 * 5 4 2 11 11 H 1.08996 * 109.46360 * 65.83885 * 10 5 4 12 12 C 1.50699 * 109.46547 * 305.85361 * 10 5 4 13 13 H 1.08000 * 119.99912 * 354.31833 * 12 10 5 14 14 C 1.37870 * 120.00020 * 174.31248 * 12 10 5 15 15 N 1.31510 * 120.00017 * 154.91667 * 14 12 10 16 16 Si 1.86803 * 119.99903 * 334.91429 * 14 12 10 17 17 H 1.48500 * 109.47574 * 269.99919 * 16 14 12 18 18 H 1.48497 * 109.47379 * 30.00246 * 16 14 12 19 19 H 1.48504 * 109.46785 * 150.00006 * 16 14 12 20 20 H 1.09002 * 109.47294 * 63.22086 * 1 2 3 21 21 H 1.09003 * 109.47666 * 183.22179 * 1 2 3 22 22 H 1.09000 * 109.47053 * 303.22062 * 1 2 3 23 23 H 1.09001 * 109.47100 * 239.99890 * 2 1 3 24 24 H 1.09004 * 109.46903 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46777 * 299.99855 * 3 2 1 26 26 H 1.09001 * 109.47204 * 59.99953 * 3 2 1 27 27 H 1.08997 * 109.47103 * 330.28307 * 4 2 1 28 28 H 1.09003 * 109.47272 * 210.28820 * 4 2 1 29 29 H 1.09004 * 109.46320 * 54.14141 * 6 5 4 30 30 H 1.09002 * 109.46298 * 294.16828 * 6 5 4 31 31 H 1.09006 * 109.50037 * 299.24373 * 7 6 5 32 32 H 1.08999 * 109.53574 * 179.14785 * 7 6 5 33 33 H 1.09000 * 109.51886 * 182.44374 * 8 7 6 34 34 H 1.08991 * 109.52615 * 62.25124 * 8 7 6 35 35 H 1.08993 * 109.51124 * 297.71570 * 9 8 7 36 36 H 1.09001 * 109.50226 * 177.59515 * 9 8 7 37 37 H 0.97000 * 120.00098 * 354.96192 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 2.2097 -2.1504 0.9545 6 6 3.1838 -2.3527 -0.1256 7 6 3.4436 -3.8501 -0.3059 8 6 2.1265 -4.5547 -0.6424 9 6 1.1141 -4.2880 0.4748 10 6 0.9217 -2.7779 0.6325 11 1 0.5376 -2.3616 -0.2988 12 6 -0.0594 -2.5101 1.7446 13 1 0.2679 -2.0114 2.6449 14 6 -1.3747 -2.9015 1.6126 15 7 -2.1020 -3.1348 2.6832 16 14 -2.1239 -3.1006 -0.0870 17 1 -2.7236 -1.8121 -0.5177 18 1 -1.0670 -3.5010 -1.0501 19 1 -3.1769 -4.1469 -0.0443 20 1 -0.3634 0.4630 -0.9175 21 1 -0.3634 -1.0260 0.0578 22 1 -0.3633 0.5630 0.8597 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.3196 -0.6002 2.0582 28 1 2.9977 -0.2958 1.5489 29 1 4.1171 -1.8501 0.1282 30 1 2.7888 -1.9383 -1.0532 31 1 3.8514 -4.2623 0.6171 32 1 4.1551 -4.0014 -1.1176 33 1 2.2992 -5.6275 -0.7290 34 1 1.7382 -4.1701 -1.5854 35 1 1.4852 -4.7071 1.4100 36 1 0.1609 -4.7516 0.2205 37 1 -1.6944 -3.1028 3.5628 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259408894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -10.565132 kcal Electronic energy + Delta-G solvation = -15535.038874 eV Core-core repulsion = 13311.693721 eV Total energy + Delta-G solvation = -2223.345153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88152 -35.08671 -32.96378 -31.47013 -30.07481 -26.68920 -25.80526 -24.29944 -22.28354 -20.77143 -19.90153 -18.29737 -17.38722 -15.52343 -14.65240 -13.95083 -13.84954 -13.59268 -13.46895 -13.12266 -12.70007 -11.94011 -11.76960 -11.73037 -11.66551 -11.33998 -11.11926 -10.86560 -10.49328 -10.41579 -10.22311 -10.06428 -9.87604 -9.72736 -9.65535 -9.43816 -8.76114 -8.13526 -7.10781 -6.44387 -3.97509 3.38917 3.42806 3.56176 4.49936 4.90929 5.23688 5.38605 5.47414 5.49339 5.59624 5.64863 5.71416 6.00972 6.06970 6.14863 6.21899 6.25787 6.29061 6.37166 6.41066 6.54332 6.55571 6.60873 6.69013 6.72132 6.84047 6.95304 6.98828 7.14626 7.29018 7.47682 7.89181 8.16293 8.41487 8.51440 9.04142 9.63989 10.93360 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.016543 C = 0.011884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.381530 B = 1692.152109 C = 2355.576197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C -0.140 4.140 4 C 0.071 3.929 5 N -0.526 5.526 6 C 0.051 3.949 7 C -0.111 4.111 8 C -0.126 4.126 9 C -0.109 4.109 10 C 0.191 3.809 11 H 0.002 0.998 12 C -0.590 4.590 13 H 0.065 0.935 14 C 0.041 3.959 15 N -0.898 5.898 16 Si 1.020 2.980 17 H -0.283 1.283 18 H -0.275 1.275 19 H -0.287 1.287 20 H 0.029 0.971 21 H 0.096 0.904 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 2.969 -6.823 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.198 4.198 4 C -0.057 4.057 5 N -0.249 5.249 6 C -0.077 4.077 7 C -0.148 4.148 8 C -0.163 4.163 9 C -0.148 4.148 10 C 0.084 3.916 11 H 0.019 0.981 12 C -0.628 4.628 13 H 0.083 0.917 14 C -0.166 4.166 15 N -0.531 5.531 16 Si 0.848 3.152 17 H -0.210 1.210 18 H -0.200 1.200 19 H -0.213 1.213 20 H 0.049 0.951 21 H 0.115 0.885 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.808 2.381 -7.168 10.168 hybrid contribution 1.078 0.763 -0.011 1.321 sum 7.887 3.144 -7.179 11.118 Atomic orbital electron populations 1.22252 0.94526 1.05217 0.99491 1.21776 0.97292 0.95606 1.00327 1.21818 0.99878 0.97008 1.01068 1.22160 0.99537 0.87016 0.97029 1.62108 1.11435 1.12085 1.39270 1.22060 0.96168 0.95840 0.93678 1.21516 0.97073 0.95622 1.00638 1.21692 0.96391 0.98804 0.99461 1.21924 0.96731 0.99428 0.96698 1.19745 0.86156 0.89820 0.95918 0.98102 1.21848 0.94490 1.43115 1.03332 0.91698 1.25473 0.94351 0.93085 1.03671 1.70789 1.40646 1.42062 0.99594 0.84385 0.76362 0.77336 0.77114 1.20997 1.20041 1.21324 0.95138 0.88532 0.93116 0.91943 0.93539 0.93620 0.92923 0.89347 0.93238 0.92409 0.95714 0.91693 0.93017 0.93259 0.93295 0.92197 0.93043 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.31 37.16 0.31 -2.86 16 2 C -0.13 -2.35 2.37 -90.62 -0.21 -2.56 16 3 C -0.14 -2.07 9.02 37.16 0.34 -1.73 16 4 C 0.07 1.39 4.96 -3.83 -0.02 1.37 16 5 N -0.53 -11.09 4.69 -228.08 -1.07 -12.16 16 6 C 0.05 0.91 5.02 -3.84 -0.02 0.89 16 7 C -0.11 -1.84 6.09 -26.65 -0.16 -2.01 16 8 C -0.13 -2.30 6.00 -26.61 -0.16 -2.46 16 9 C -0.11 -2.43 4.96 -26.65 -0.13 -2.57 16 10 C 0.19 4.46 0.73 -68.87 -0.05 4.41 16 11 H 0.00 0.04 4.31 -51.93 -0.22 -0.18 16 12 C -0.59 -15.79 6.37 -34.44 -0.22 -16.01 16 13 H 0.06 1.90 6.76 -52.49 -0.35 1.55 16 14 C 0.04 1.13 5.19 -17.82 -0.09 1.04 16 15 N -0.90 -26.86 13.70 55.43 0.76 -26.10 16 16 Si 1.02 24.81 24.83 -169.99 -4.22 20.59 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.27 6.06 56.52 0.34 -5.93 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.10 2.20 1.75 -51.93 -0.09 2.11 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 1.15 5.60 -51.93 -0.29 0.86 16 24 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.96 5.79 -51.93 -0.30 1.66 16 28 H 0.05 0.88 7.81 -51.93 -0.41 0.47 16 29 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.02 0.45 6.13 -51.93 -0.32 0.13 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.05 1.18 6.00 -51.93 -0.31 0.87 16 37 H 0.27 8.10 8.73 -40.82 -0.36 7.75 16 LS Contribution 264.91 15.07 3.99 3.99 Total: -1.00 -27.90 264.91 -7.12 -35.02 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.16 Total: 1.13 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -0.43 Total: -22.47 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.31 Total: -38.26 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.22 Total: 20.59 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.90 -7.12 -35.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259408894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.458 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds