Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.52997 * 109.46940 * 120.00212 * 2 1 3 5 5 N 1.46899 * 109.47353 * 90.28981 * 4 2 1 6 6 C 1.46841 * 110.99525 * 60.45979 * 5 4 2 7 7 C 1.53039 * 109.51705 * 174.15370 * 6 5 4 8 8 C 1.53117 * 109.27671 * 59.18561 * 7 6 5 9 9 C 1.53113 * 109.15893 * 302.34300 * 8 7 6 10 10 C 1.46853 * 110.99537 * 296.25605 * 5 4 2 11 11 H 1.08996 * 109.46360 * 65.83885 * 10 5 4 12 12 C 1.50699 * 109.46547 * 305.85361 * 10 5 4 13 13 H 1.08000 * 119.99912 * 354.31833 * 12 10 5 14 14 C 1.37870 * 120.00020 * 174.31248 * 12 10 5 15 15 N 1.31510 * 120.00017 * 154.91667 * 14 12 10 16 16 Si 1.86803 * 119.99903 * 334.91429 * 14 12 10 17 17 H 1.48500 * 109.47574 * 269.99919 * 16 14 12 18 18 H 1.48497 * 109.47379 * 30.00246 * 16 14 12 19 19 H 1.48504 * 109.46785 * 150.00006 * 16 14 12 20 20 H 1.09002 * 109.47294 * 63.22086 * 1 2 3 21 21 H 1.09003 * 109.47666 * 183.22179 * 1 2 3 22 22 H 1.09000 * 109.47053 * 303.22062 * 1 2 3 23 23 H 1.09001 * 109.47100 * 239.99890 * 2 1 3 24 24 H 1.09004 * 109.46903 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46777 * 299.99855 * 3 2 1 26 26 H 1.09001 * 109.47204 * 59.99953 * 3 2 1 27 27 H 1.08997 * 109.47103 * 330.28307 * 4 2 1 28 28 H 1.09003 * 109.47272 * 210.28820 * 4 2 1 29 29 H 1.09004 * 109.46320 * 54.14141 * 6 5 4 30 30 H 1.09002 * 109.46298 * 294.16828 * 6 5 4 31 31 H 1.09006 * 109.50037 * 299.24373 * 7 6 5 32 32 H 1.08999 * 109.53574 * 179.14785 * 7 6 5 33 33 H 1.09000 * 109.51886 * 182.44374 * 8 7 6 34 34 H 1.08991 * 109.52615 * 62.25124 * 8 7 6 35 35 H 1.08993 * 109.51124 * 297.71570 * 9 8 7 36 36 H 1.09001 * 109.50226 * 177.59515 * 9 8 7 37 37 H 0.97000 * 120.00098 * 354.96192 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 2.2097 -2.1504 0.9545 6 6 3.1838 -2.3527 -0.1256 7 6 3.4436 -3.8501 -0.3059 8 6 2.1265 -4.5547 -0.6424 9 6 1.1141 -4.2880 0.4748 10 6 0.9217 -2.7779 0.6325 11 1 0.5376 -2.3616 -0.2988 12 6 -0.0594 -2.5101 1.7446 13 1 0.2679 -2.0114 2.6449 14 6 -1.3747 -2.9015 1.6126 15 7 -2.1020 -3.1348 2.6832 16 14 -2.1239 -3.1006 -0.0870 17 1 -2.7236 -1.8121 -0.5177 18 1 -1.0670 -3.5010 -1.0501 19 1 -3.1769 -4.1469 -0.0443 20 1 -0.3634 0.4630 -0.9175 21 1 -0.3634 -1.0260 0.0578 22 1 -0.3633 0.5630 0.8597 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.3196 -0.6002 2.0582 28 1 2.9977 -0.2958 1.5489 29 1 4.1171 -1.8501 0.1282 30 1 2.7888 -1.9383 -1.0532 31 1 3.8514 -4.2623 0.6171 32 1 4.1551 -4.0014 -1.1176 33 1 2.2992 -5.6275 -0.7290 34 1 1.7382 -4.1701 -1.5854 35 1 1.4852 -4.7071 1.4100 36 1 0.1609 -4.7516 0.2205 37 1 -1.6944 -3.1028 3.5628 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259408894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -28.852254 kcal Electronic energy + Delta-G solvation = -15535.831863 eV Core-core repulsion = 13311.693721 eV Total energy + Delta-G solvation = -2224.138142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48684 -36.54877 -35.01052 -32.97271 -31.85977 -28.19224 -27.32189 -26.13277 -23.82393 -22.48402 -21.41854 -19.98610 -19.39020 -17.11499 -16.33957 -15.56489 -15.41047 -15.18760 -15.15122 -14.60221 -14.17477 -13.65752 -13.52424 -13.31592 -13.10526 -12.94654 -12.82190 -12.32164 -12.15493 -11.97425 -11.92716 -11.66023 -11.48398 -11.36862 -11.30504 -11.04908 -10.68905 -10.27450 -8.74018 -8.67531 -6.18932 1.42450 1.45286 1.62800 2.47866 3.05936 3.38971 3.97124 4.05972 4.09942 4.21651 4.26378 4.28597 4.56285 4.64636 4.73273 4.81077 4.84805 4.88893 4.95506 4.98718 5.05200 5.10623 5.13446 5.19060 5.23581 5.29450 5.34566 5.45895 5.55549 5.60435 5.73083 6.00218 6.16649 6.38375 6.75624 6.87748 7.50227 8.69208 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.016543 C = 0.011884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.381530 B = 1692.152109 C = 2355.576197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.133 4.133 4 C 0.072 3.928 5 N -0.546 5.546 6 C 0.049 3.951 7 C -0.107 4.107 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.197 3.803 11 H 0.001 0.999 12 C -0.573 4.573 13 H 0.025 0.975 14 C -0.006 4.006 15 N -0.936 5.936 16 Si 1.055 2.945 17 H -0.270 1.270 18 H -0.249 1.249 19 H -0.291 1.291 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 3.373 -9.572 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.143 4.143 3 C -0.191 4.191 4 C -0.056 4.056 5 N -0.269 5.269 6 C -0.079 4.079 7 C -0.145 4.145 8 C -0.159 4.159 9 C -0.152 4.152 10 C 0.089 3.911 11 H 0.019 0.981 12 C -0.611 4.611 13 H 0.043 0.957 14 C -0.206 4.206 15 N -0.572 5.572 16 Si 0.878 3.122 17 H -0.196 1.196 18 H -0.172 1.172 19 H -0.218 1.218 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.873 2.799 -9.925 13.604 hybrid contribution 0.514 0.680 0.934 1.265 sum 9.388 3.479 -8.991 13.456 Atomic orbital electron populations 1.22241 0.96381 1.03339 0.99936 1.21696 0.95655 0.97703 0.99279 1.21751 1.01052 0.94541 1.01755 1.22100 0.99678 0.86960 0.96847 1.62032 1.10806 1.12824 1.41243 1.22200 0.95896 0.97167 0.92643 1.21539 0.96823 0.94319 1.01827 1.21652 0.95903 1.00654 0.97650 1.21854 0.97540 0.98101 0.97673 1.19536 0.86642 0.90871 0.94023 0.98129 1.21913 0.95398 1.41050 1.02780 0.95693 1.26617 0.95305 0.92824 1.05809 1.70914 1.41105 1.45651 0.99485 0.83945 0.76421 0.77773 0.74086 1.19621 1.17243 1.21763 0.93101 0.91303 0.94457 0.91429 0.91607 0.92106 0.93142 0.93222 0.91005 0.90182 0.95151 0.92240 0.89252 0.91054 0.92607 0.94231 0.94428 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.31 71.98 0.60 -5.74 16 2 C -0.12 -4.18 2.37 -10.80 -0.03 -4.20 16 3 C -0.13 -3.51 9.02 71.98 0.65 -2.86 16 4 C 0.07 2.78 4.96 86.30 0.43 3.21 16 5 N -0.55 -22.32 4.69 -875.50 -4.10 -26.42 16 6 C 0.05 1.56 5.02 86.33 0.43 2.00 16 7 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 8 C -0.12 -4.02 6.00 30.67 0.18 -3.83 16 9 C -0.11 -4.93 4.96 30.65 0.15 -4.78 16 10 C 0.20 9.12 0.73 44.19 0.03 9.15 16 11 H 0.00 0.07 4.31 -2.39 -0.01 0.06 16 12 C -0.57 -31.73 6.37 25.60 0.16 -31.57 16 13 H 0.02 1.55 6.76 -2.91 -0.02 1.53 16 14 C -0.01 -0.34 5.19 84.65 0.44 0.10 16 15 N -0.94 -58.53 13.70 21.44 0.29 -58.23 16 16 Si 1.05 50.27 24.83 68.60 1.70 51.98 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.25 -10.67 6.06 99.48 0.60 -10.07 16 19 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.07 3.09 1.75 -2.39 0.00 3.09 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 2.25 5.60 -2.39 -0.01 2.23 16 24 H 0.06 1.49 8.11 -2.38 -0.02 1.47 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 2.28 5.79 -2.39 -0.01 2.26 16 28 H 0.07 2.40 7.81 -2.39 -0.02 2.38 16 29 H 0.08 2.23 8.12 -2.38 -0.02 2.21 16 30 H 0.03 0.96 6.13 -2.39 -0.01 0.95 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.70 6.00 -2.39 -0.01 1.69 16 37 H 0.25 16.21 8.73 -92.71 -0.81 15.41 16 Total: -1.00 -62.45 264.91 2.02 -60.43 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.88 Total: 13.74 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 3.24 Total: -41.49 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -3.81 Total: -84.66 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.70 Total: 51.98 kcal Total: -62.45 2.02 -60.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259408894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.581 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds