Wall clock time and date at job start Mon Mar 30 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46986 * 2 1 4 4 N 1.46897 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.46844 * 111.00090 * 299.20842 * 4 2 1 6 6 C 1.53035 * 109.52494 * 174.16001 * 5 4 2 7 7 C 1.53124 * 109.27794 * 59.18054 * 6 5 4 8 8 C 1.53126 * 109.15878 * 302.34791 * 7 6 5 9 9 H 1.09002 * 109.50346 * 297.67261 * 8 7 6 10 10 C 1.53006 * 109.50147 * 177.59192 * 8 7 6 11 11 C 1.50707 * 109.46637 * 64.99885 * 10 8 7 12 12 H 1.07991 * 120.00327 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99373 * 179.97438 * 11 10 8 14 14 N 1.31518 * 120.00243 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99789 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46649 * 60.00236 * 15 13 11 17 17 H 1.48502 * 109.47007 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46934 * 300.00251 * 15 13 11 19 19 C 1.46854 * 110.99665 * 175.00166 * 4 2 1 20 20 H 1.09004 * 109.47524 * 299.99640 * 1 2 3 21 21 H 1.09009 * 109.47436 * 59.99648 * 1 2 3 22 22 H 1.09003 * 109.47385 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47073 * 240.00985 * 2 1 3 24 24 H 1.08994 * 109.46797 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47260 * 300.00109 * 3 2 1 26 26 H 1.09003 * 109.46411 * 60.00579 * 3 2 1 27 27 H 1.09002 * 109.46133 * 294.17882 * 5 4 2 28 28 H 1.09002 * 109.46211 * 54.14407 * 5 4 2 29 29 H 1.08999 * 109.50365 * 299.24296 * 6 5 4 30 30 H 1.08993 * 109.50781 * 179.11969 * 6 5 4 31 31 H 1.08998 * 109.52745 * 182.44119 * 7 6 5 32 32 H 1.08999 * 109.52030 * 62.24575 * 7 6 5 33 33 H 1.08996 * 109.46808 * 184.99883 * 10 8 7 34 34 H 1.08998 * 109.47001 * 304.99985 * 10 8 7 35 35 H 0.97003 * 119.99684 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.46310 * 65.82535 * 19 4 2 37 37 H 1.09004 * 109.45830 * 305.85222 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5643 -0.0159 2.4205 6 6 1.9681 -0.8420 3.6438 7 6 3.4907 -1.0033 3.6648 8 6 3.9438 -1.6665 2.3611 9 1 3.5061 -2.6621 2.2880 10 6 5.4698 -1.7770 2.3477 11 6 5.9154 -2.7093 3.4448 12 1 5.1836 -3.1765 4.0869 13 6 7.2575 -2.9665 3.6278 14 7 8.1488 -2.3979 2.8455 15 14 7.8101 -4.1226 4.9872 16 1 7.2142 -5.4649 4.7678 17 1 9.2911 -4.2297 4.9743 18 1 7.3640 -3.5915 6.3003 19 6 3.4827 -0.8164 1.1750 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.0229 0.9711 2.4813 28 1 0.4797 0.0887 2.3948 29 1 1.4988 -1.8244 3.5906 30 1 1.6438 -0.3318 4.5507 31 1 3.7793 -1.6275 4.5104 32 1 3.9595 -0.0237 3.7571 33 1 5.7973 -2.1670 1.3840 34 1 5.9068 -0.7915 2.5084 35 1 9.0931 -2.5786 2.9746 36 1 3.9322 0.1743 1.2417 37 1 3.7913 -1.2933 0.2446 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259493624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:18 Heat of formation + Delta-G solvation = -24.373167 kcal Electronic energy + Delta-G solvation = -14689.702341 eV Core-core repulsion = 12465.758426 eV Total energy + Delta-G solvation = -2223.943914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.15034 -35.32184 -32.87577 -31.03152 -30.16275 -27.27819 -26.59509 -24.14556 -22.80679 -21.47624 -19.29447 -18.69462 -16.25967 -15.85375 -14.71875 -14.43407 -14.25514 -13.90823 -13.60064 -13.11014 -12.74023 -12.56828 -12.07609 -11.86352 -11.62912 -11.59086 -11.16061 -11.10746 -10.74214 -10.65760 -10.62103 -10.31321 -10.08974 -9.89498 -9.47616 -9.01395 -8.89432 -8.29537 -7.88182 -5.94801 -3.95923 3.36478 3.40667 3.43314 4.22643 4.51026 4.96631 5.15865 5.30012 5.40377 5.41428 5.49055 5.59342 5.65093 5.72566 5.85482 5.87898 5.96899 5.98167 6.12975 6.20571 6.23314 6.28779 6.42792 6.44948 6.63043 6.67166 7.06916 7.14522 7.18498 7.52742 7.56758 7.73288 7.89522 8.05761 8.49795 9.10314 9.67337 11.16724 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055366 B = 0.006929 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.605859 B = 4039.781114 C = 4312.932942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.187 4.187 4 N -0.532 5.532 5 C 0.054 3.946 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.076 4.076 9 H 0.063 0.937 10 C 0.028 3.972 11 C -0.512 4.512 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.060 3.940 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.029 0.971 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.113 5.832 -3.338 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.246 4.246 4 N -0.256 5.256 5 C -0.074 4.074 6 C -0.157 4.157 7 C -0.142 4.142 8 C -0.094 4.094 9 H 0.082 0.918 10 C -0.010 4.010 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.067 4.067 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.121 5.367 -3.372 14.572 hybrid contribution 0.838 0.261 0.696 1.120 sum -12.283 5.628 -2.676 13.773 Atomic orbital electron populations 1.21867 0.94876 1.02179 1.01154 1.21683 0.95288 0.92334 0.94190 1.22485 1.01953 0.98392 1.01755 1.62215 1.12233 1.50107 1.01075 1.22111 0.99294 0.95508 0.90447 1.21657 0.98062 1.00116 0.95820 1.21537 0.92820 1.00457 0.99427 1.21241 0.99077 0.97515 0.91608 0.91815 1.19106 0.87925 0.96892 0.97029 1.21201 0.91673 1.26696 1.15493 0.92624 1.25018 0.96965 0.96241 0.96288 1.69961 1.01230 1.43915 1.38638 0.86695 0.77380 0.81547 0.82598 1.20272 1.21392 1.20318 1.22265 0.85304 0.98871 1.00231 0.92711 0.92760 0.91975 0.90285 0.92242 0.92603 0.92554 0.95219 0.91467 0.91706 0.92638 0.91196 0.93273 0.96678 0.96813 0.93070 0.95230 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.99 37.16 0.33 -1.23 16 2 C 0.07 0.96 2.96 -67.71 -0.20 0.76 16 3 C -0.19 -2.29 8.50 37.16 0.32 -1.97 16 4 N -0.53 -8.37 4.64 -226.69 -1.05 -9.42 16 5 C 0.05 0.79 4.63 -3.84 -0.02 0.78 16 6 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 7 C -0.10 -2.02 5.05 -26.60 -0.13 -2.16 16 8 C -0.08 -1.59 2.30 -90.53 -0.21 -1.80 16 9 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 10 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 11 C -0.51 -14.47 8.44 -34.44 -0.29 -14.76 16 12 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.06 1.10 4.31 -3.83 -0.02 1.09 16 20 H 0.05 0.58 6.30 -51.93 -0.33 0.26 16 21 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 24 H 0.06 0.80 6.65 -51.93 -0.35 0.46 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.68 6.52 -51.93 -0.34 0.35 16 27 H 0.03 0.44 6.62 -51.93 -0.34 0.10 16 28 H 0.07 0.87 6.03 -51.93 -0.31 0.56 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.44 7.03 -51.93 -0.37 1.08 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.03 0.55 6.73 -51.93 -0.35 0.20 16 37 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -29.37 280.67 -8.24 -37.61 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.53 Total: -3.55 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -0.60 Total: -19.22 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.32 Total: -35.91 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.37 -8.24 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.240 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds