Wall clock time and date at job start Mon Mar 30 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46986 * 2 1 4 4 N 1.46897 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.46844 * 111.00090 * 299.20842 * 4 2 1 6 6 C 1.53035 * 109.52494 * 174.16001 * 5 4 2 7 7 C 1.53124 * 109.27794 * 59.18054 * 6 5 4 8 8 C 1.53126 * 109.15878 * 302.34791 * 7 6 5 9 9 H 1.09002 * 109.50346 * 297.67261 * 8 7 6 10 10 C 1.53006 * 109.50147 * 177.59192 * 8 7 6 11 11 C 1.50707 * 109.46637 * 64.99885 * 10 8 7 12 12 H 1.07991 * 120.00327 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99373 * 179.97438 * 11 10 8 14 14 N 1.31518 * 120.00243 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99789 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46649 * 60.00236 * 15 13 11 17 17 H 1.48502 * 109.47007 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46934 * 300.00251 * 15 13 11 19 19 C 1.46854 * 110.99665 * 175.00166 * 4 2 1 20 20 H 1.09004 * 109.47524 * 299.99640 * 1 2 3 21 21 H 1.09009 * 109.47436 * 59.99648 * 1 2 3 22 22 H 1.09003 * 109.47385 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47073 * 240.00985 * 2 1 3 24 24 H 1.08994 * 109.46797 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47260 * 300.00109 * 3 2 1 26 26 H 1.09003 * 109.46411 * 60.00579 * 3 2 1 27 27 H 1.09002 * 109.46133 * 294.17882 * 5 4 2 28 28 H 1.09002 * 109.46211 * 54.14407 * 5 4 2 29 29 H 1.08999 * 109.50365 * 299.24296 * 6 5 4 30 30 H 1.08993 * 109.50781 * 179.11969 * 6 5 4 31 31 H 1.08998 * 109.52745 * 182.44119 * 7 6 5 32 32 H 1.08999 * 109.52030 * 62.24575 * 7 6 5 33 33 H 1.08996 * 109.46808 * 184.99883 * 10 8 7 34 34 H 1.08998 * 109.47001 * 304.99985 * 10 8 7 35 35 H 0.97003 * 119.99684 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.46310 * 65.82535 * 19 4 2 37 37 H 1.09004 * 109.45830 * 305.85222 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5643 -0.0159 2.4205 6 6 1.9681 -0.8420 3.6438 7 6 3.4907 -1.0033 3.6648 8 6 3.9438 -1.6665 2.3611 9 1 3.5061 -2.6621 2.2880 10 6 5.4698 -1.7770 2.3477 11 6 5.9154 -2.7093 3.4448 12 1 5.1836 -3.1765 4.0869 13 6 7.2575 -2.9665 3.6278 14 7 8.1488 -2.3979 2.8455 15 14 7.8101 -4.1226 4.9872 16 1 7.2142 -5.4649 4.7678 17 1 9.2911 -4.2297 4.9743 18 1 7.3640 -3.5915 6.3003 19 6 3.4827 -0.8164 1.1750 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.0229 0.9711 2.4813 28 1 0.4797 0.0887 2.3948 29 1 1.4988 -1.8244 3.5906 30 1 1.6438 -0.3318 4.5507 31 1 3.7793 -1.6275 4.5104 32 1 3.9595 -0.0237 3.7571 33 1 5.7973 -2.1670 1.3840 34 1 5.9068 -0.7915 2.5084 35 1 9.0931 -2.5786 2.9746 36 1 3.9322 0.1743 1.2417 37 1 3.7913 -1.2933 0.2446 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259493624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:18 Heat of formation + Delta-G solvation = -42.144566 kcal Electronic energy + Delta-G solvation = -14690.472966 eV Core-core repulsion = 12465.758426 eV Total energy + Delta-G solvation = -2224.714540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46966 -36.82614 -34.80792 -32.70727 -31.43887 -28.73076 -27.98588 -25.69288 -24.49690 -22.94598 -20.78431 -20.06425 -18.44769 -17.09020 -16.45459 -15.98787 -15.46856 -15.26855 -15.02099 -14.50244 -14.31320 -13.97394 -13.73761 -13.26537 -13.00186 -12.87928 -12.73015 -12.47479 -12.45212 -12.16988 -12.14702 -11.67732 -11.61739 -11.53977 -11.24983 -10.87220 -10.72073 -10.51639 -9.13455 -8.17665 -6.27272 1.39826 1.42978 1.50667 2.41924 3.02043 3.15444 3.93175 3.99691 4.07117 4.16365 4.28216 4.41513 4.45000 4.54807 4.64151 4.76329 4.78415 4.82612 4.87338 4.94604 5.03876 5.07788 5.09525 5.20104 5.27158 5.37807 5.41895 5.42774 5.50437 5.58563 5.79776 5.88751 6.18950 6.31611 6.35823 6.88114 7.41039 8.94364 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055366 B = 0.006929 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.605859 B = 4039.781114 C = 4312.932942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 C -0.182 4.182 4 N -0.539 5.539 5 C 0.055 3.945 6 C -0.111 4.111 7 C -0.101 4.101 8 C -0.068 4.068 9 H 0.053 0.947 10 C 0.034 3.966 11 C -0.530 4.530 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.072 3.928 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.040 0.960 33 H -0.014 1.014 34 H -0.013 1.013 35 H 0.262 0.738 36 H 0.022 0.978 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 5.983 -2.696 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.241 4.241 4 N -0.263 5.263 5 C -0.073 4.073 6 C -0.149 4.149 7 C -0.139 4.139 8 C -0.087 4.087 9 H 0.071 0.929 10 C -0.003 4.003 11 C -0.568 4.568 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.056 4.056 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.004 0.996 34 H 0.005 0.995 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.125 5.524 -2.732 16.332 hybrid contribution 1.460 0.237 0.444 1.544 sum -13.666 5.760 -2.288 15.006 Atomic orbital electron populations 1.21817 0.92595 1.02401 1.02531 1.21819 0.96991 0.92437 0.92686 1.22429 1.00619 0.98047 1.02978 1.62188 1.09856 1.51464 1.02777 1.22178 1.00878 0.94969 0.89255 1.21606 0.94672 1.00835 0.97744 1.21452 0.95902 0.99186 0.97352 1.21040 0.95417 0.97917 0.94295 0.92883 1.18983 0.91512 0.94781 0.95031 1.21587 0.92187 1.26987 1.15991 0.92155 1.25967 0.97088 0.97978 0.98893 1.70103 1.01611 1.45461 1.40523 0.85544 0.76952 0.79366 0.79461 1.19248 1.20933 1.19154 1.21968 0.87585 0.97664 0.98339 0.92013 0.90715 0.92320 0.90744 0.94261 0.90499 0.92191 0.95208 0.88658 0.91690 0.90089 0.93002 0.94135 0.99574 0.99469 0.92911 0.95951 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.99 71.98 0.65 -1.87 16 2 C 0.07 1.66 2.96 44.92 0.13 1.79 16 3 C -0.18 -4.10 8.50 71.98 0.61 -3.49 16 4 N -0.54 -16.20 4.64 -871.11 -4.04 -20.24 16 5 C 0.05 1.46 4.63 86.33 0.40 1.86 16 6 C -0.11 -3.26 6.09 30.65 0.19 -3.07 16 7 C -0.10 -3.91 5.05 30.68 0.15 -3.75 16 8 C -0.07 -2.93 2.30 -10.74 -0.02 -2.96 16 9 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 10 C 0.03 1.88 4.45 29.85 0.13 2.01 16 11 C -0.53 -30.65 8.44 25.60 0.22 -30.44 16 12 H 0.06 3.36 7.06 -2.92 -0.02 3.34 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 15 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.07 2.68 4.31 86.32 0.37 3.06 16 20 H 0.06 1.06 6.30 -2.38 -0.02 1.05 16 21 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 24 H 0.04 1.03 6.65 -2.39 -0.02 1.02 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.31 6.52 -2.39 -0.02 1.29 16 27 H 0.03 0.81 6.62 -2.39 -0.02 0.80 16 28 H 0.10 2.08 6.03 -2.39 -0.01 2.07 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 2.15 7.03 -2.39 -0.02 2.14 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.02 0.85 6.73 -2.39 -0.02 0.84 16 37 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 Total: -1.00 -64.11 280.67 2.57 -61.55 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.01 Total: 6.03 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.29 Total: -36.52 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.76 Total: -78.18 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.11 2.57 -61.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.402 kcal (2) G-P(sol) polarization free energy of solvation -64.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds