Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46937 * 2 1 4 4 H 1.08997 * 109.46621 * 304.78757 * 3 2 1 5 5 C 1.52993 * 109.47178 * 64.79005 * 3 2 1 6 6 C 1.50700 * 109.47506 * 59.28730 * 5 3 2 7 7 H 1.07999 * 119.99603 * 5.42887 * 6 5 3 8 8 C 1.37878 * 120.00050 * 185.43504 * 6 5 3 9 9 N 1.31518 * 120.00278 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99966 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47021 * 59.99207 * 10 8 6 12 12 H 1.48495 * 109.47000 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46701 * 299.99307 * 10 8 6 14 14 C 1.53000 * 109.46774 * 184.78640 * 3 2 1 15 15 H 1.08996 * 109.50651 * 300.07729 * 14 3 2 16 16 C 1.53123 * 109.50074 * 179.97438 * 14 3 2 17 17 C 1.53117 * 109.15757 * 182.40629 * 16 14 3 18 18 C 1.53036 * 109.28142 * 57.65858 * 17 16 14 19 19 N 1.46847 * 109.52010 * 300.81826 * 18 17 16 20 20 C 1.46849 * 111.19966 * 61.74529 * 19 18 17 21 21 H 1.08996 * 109.46958 * 174.33584 * 1 2 3 22 22 H 1.09002 * 109.47309 * 294.33039 * 1 2 3 23 23 H 1.08999 * 109.47126 * 54.33150 * 1 2 3 24 24 H 1.08994 * 109.47219 * 239.99469 * 2 1 3 25 25 H 1.09001 * 109.47223 * 119.99535 * 2 1 3 26 26 H 1.08998 * 109.47087 * 179.28695 * 5 3 2 27 27 H 1.09007 * 109.46925 * 299.28521 * 5 3 2 28 28 H 0.96991 * 120.00187 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.52500 * 302.31178 * 16 14 3 30 30 H 1.09000 * 109.51975 * 62.44199 * 16 14 3 31 31 H 1.09001 * 109.50392 * 177.60124 * 17 16 14 32 32 H 1.08998 * 109.50898 * 297.67636 * 17 16 14 33 33 H 1.08997 * 109.46012 * 60.83278 * 18 17 16 34 34 H 1.09001 * 109.46110 * 180.80289 * 18 17 16 35 35 H 1.00893 * 111.00204 * 297.64027 * 19 18 17 36 36 H 1.08994 * 109.46204 * 178.24362 * 20 19 18 37 37 H 1.08993 * 109.46708 * 58.26719 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6083 1.9804 -0.8440 5 6 1.6307 2.1282 1.3050 6 6 2.2131 1.3743 2.4727 7 1 2.8859 0.5473 2.3001 8 6 1.8870 1.7403 3.7614 9 7 1.0680 2.7476 3.9717 10 14 2.6095 0.8062 5.2089 11 1 4.0907 0.9047 5.1718 12 1 2.1063 1.3925 6.4771 13 1 2.2059 -0.6207 5.1282 14 6 3.5652 1.4442 -0.1204 15 1 3.9974 0.9051 0.7226 16 6 4.0764 2.8876 -0.1211 17 6 5.5968 2.8821 -0.3022 18 6 5.9480 2.1587 -1.6042 19 7 5.4382 0.7824 -1.5537 20 6 3.9753 0.7623 -1.4277 21 1 -0.3633 -1.0226 -0.1014 22 1 -0.3634 0.4234 0.9364 23 1 -0.3633 0.5992 -0.8349 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.0049 3.1519 1.3105 27 1 0.5436 2.1382 1.3848 28 1 0.8389 3.0053 4.8782 29 1 3.6139 3.4374 -0.9407 30 1 3.8231 3.3641 0.8260 31 1 5.9617 3.9083 -0.3462 32 1 6.0616 2.3665 0.5381 33 1 5.4944 2.6834 -2.4450 34 1 7.0307 2.1406 -1.7289 35 1 5.8728 0.2631 -0.8058 36 1 3.6252 -0.2699 -1.4243 37 1 3.5309 1.2936 -2.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260545901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -37.262061 kcal Electronic energy + Delta-G solvation = -14982.985314 eV Core-core repulsion = 12758.482495 eV Total energy + Delta-G solvation = -2224.502819 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.90244 -35.57405 -32.36749 -31.34176 -30.26872 -28.09971 -24.95695 -23.62424 -22.06296 -21.92268 -19.83346 -18.78134 -16.00452 -15.70498 -14.75575 -14.40669 -14.26023 -13.70966 -13.49992 -13.13712 -12.53830 -12.26457 -11.84200 -11.73265 -11.39076 -11.26418 -10.94445 -10.83072 -10.69549 -10.57034 -10.43826 -10.27121 -9.98363 -9.91825 -9.28073 -9.10663 -8.74313 -8.29282 -7.89210 -5.96061 -3.95980 3.32649 3.37959 3.39769 4.47913 4.63000 5.15073 5.34569 5.39932 5.42718 5.60548 5.71905 5.76807 5.90794 5.96884 6.00602 6.08675 6.20301 6.27262 6.35485 6.46682 6.55348 6.59274 6.70587 6.81411 6.86657 7.00020 7.06576 7.20936 7.33486 7.35921 7.63875 7.75266 7.87200 8.05194 8.49349 9.09646 9.66497 11.15242 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.010579 C = 0.008898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.806510 B = 2646.030652 C = 3146.069169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.072 4.072 4 H 0.039 0.961 5 C 0.024 3.976 6 C -0.503 4.503 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.106 4.106 15 H 0.077 0.923 16 C -0.111 4.111 17 C -0.157 4.157 18 C 0.058 3.942 19 N -0.691 5.691 20 C 0.056 3.944 21 H 0.037 0.963 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.012 0.988 27 H 0.021 0.979 28 H 0.259 0.741 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.337 0.663 36 H 0.073 0.927 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -2.268 -8.748 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.091 4.091 4 H 0.057 0.943 5 C -0.012 4.012 6 C -0.542 4.542 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.712 3.288 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.126 4.126 15 H 0.095 0.905 16 C -0.149 4.149 17 C -0.196 4.196 18 C -0.072 4.072 19 N -0.318 5.318 20 C -0.073 4.073 21 H 0.056 0.944 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.091 0.909 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.447 -2.248 -9.316 11.023 hybrid contribution 0.200 -0.086 1.967 1.979 sum 5.647 -2.334 -7.349 9.557 Atomic orbital electron populations 1.21730 0.96943 0.99617 1.01996 1.21521 0.95257 0.97418 1.00536 1.21147 0.92897 0.95661 0.99438 0.94291 1.19194 0.96813 0.95119 0.90119 1.21164 1.27068 1.15262 0.90677 0.92707 1.24998 0.95386 0.95229 0.98862 1.69948 1.35298 1.27603 1.20832 0.86795 0.79435 0.80242 0.82337 1.20461 1.21469 1.20370 1.21755 0.97412 0.95962 0.97439 0.90499 1.21589 0.93414 0.97437 1.02424 1.22266 0.98041 1.00684 0.98614 1.21979 0.99202 0.89120 0.96896 1.60782 1.06547 1.13444 1.51023 1.22231 0.87012 1.00825 0.97264 0.94421 0.91540 0.94147 0.94247 0.91120 0.96944 0.96092 0.93159 0.93222 0.90350 0.92317 0.92189 0.91502 0.91655 0.84618 0.90915 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.52 37.16 0.35 -2.26 16 2 C -0.11 -2.04 5.01 -26.73 -0.13 -2.18 16 3 C -0.07 -1.43 1.74 -90.62 -0.16 -1.59 16 4 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 5 C 0.02 0.60 4.17 -27.89 -0.12 0.49 16 6 C -0.50 -13.40 7.57 -34.44 -0.26 -13.66 16 7 H 0.05 1.43 5.72 -52.49 -0.30 1.13 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C -0.11 -1.89 1.67 -90.53 -0.15 -2.05 16 15 H 0.08 1.54 6.57 -51.93 -0.34 1.20 16 16 C -0.11 -1.95 4.86 -26.61 -0.13 -2.08 16 17 C -0.16 -2.31 6.08 -26.65 -0.16 -2.47 16 18 C 0.06 0.77 6.55 -3.83 -0.03 0.75 16 19 N -0.69 -9.82 6.87 -113.82 -0.78 -10.60 16 20 C 0.06 0.86 5.47 -3.83 -0.02 0.84 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 1.37 6.86 -51.93 -0.36 1.01 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.64 6.21 -51.93 -0.32 0.32 16 25 H 0.07 1.45 6.54 -51.93 -0.34 1.11 16 26 H 0.01 0.33 6.45 -51.93 -0.33 -0.01 16 27 H 0.02 0.56 6.72 -51.92 -0.35 0.21 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.61 6.56 -51.93 -0.34 1.27 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.34 4.59 8.86 -39.30 -0.35 4.25 16 36 H 0.07 1.10 6.38 -51.93 -0.33 0.77 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 277.55 15.07 4.18 4.18 Total: -1.00 -27.99 277.55 -8.09 -36.08 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.30 Total: 2.46 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -0.90 Total: -22.76 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.05 Total: -36.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.99 -8.09 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.187 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds