Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46937 * 2 1 4 4 H 1.08997 * 109.46621 * 304.78757 * 3 2 1 5 5 C 1.52993 * 109.47178 * 64.79005 * 3 2 1 6 6 C 1.50700 * 109.47506 * 59.28730 * 5 3 2 7 7 H 1.07999 * 119.99603 * 5.42887 * 6 5 3 8 8 C 1.37878 * 120.00050 * 185.43504 * 6 5 3 9 9 N 1.31518 * 120.00278 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99966 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47021 * 59.99207 * 10 8 6 12 12 H 1.48495 * 109.47000 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46701 * 299.99307 * 10 8 6 14 14 C 1.53000 * 109.46774 * 184.78640 * 3 2 1 15 15 H 1.08996 * 109.50651 * 300.07729 * 14 3 2 16 16 C 1.53123 * 109.50074 * 179.97438 * 14 3 2 17 17 C 1.53117 * 109.15757 * 182.40629 * 16 14 3 18 18 C 1.53036 * 109.28142 * 57.65858 * 17 16 14 19 19 N 1.46847 * 109.52010 * 300.81826 * 18 17 16 20 20 C 1.46849 * 111.19966 * 61.74529 * 19 18 17 21 21 H 1.08996 * 109.46958 * 174.33584 * 1 2 3 22 22 H 1.09002 * 109.47309 * 294.33039 * 1 2 3 23 23 H 1.08999 * 109.47126 * 54.33150 * 1 2 3 24 24 H 1.08994 * 109.47219 * 239.99469 * 2 1 3 25 25 H 1.09001 * 109.47223 * 119.99535 * 2 1 3 26 26 H 1.08998 * 109.47087 * 179.28695 * 5 3 2 27 27 H 1.09007 * 109.46925 * 299.28521 * 5 3 2 28 28 H 0.96991 * 120.00187 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.52500 * 302.31178 * 16 14 3 30 30 H 1.09000 * 109.51975 * 62.44199 * 16 14 3 31 31 H 1.09001 * 109.50392 * 177.60124 * 17 16 14 32 32 H 1.08998 * 109.50898 * 297.67636 * 17 16 14 33 33 H 1.08997 * 109.46012 * 60.83278 * 18 17 16 34 34 H 1.09001 * 109.46110 * 180.80289 * 18 17 16 35 35 H 1.00893 * 111.00204 * 297.64027 * 19 18 17 36 36 H 1.08994 * 109.46204 * 178.24362 * 20 19 18 37 37 H 1.08993 * 109.46708 * 58.26719 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6083 1.9804 -0.8440 5 6 1.6307 2.1282 1.3050 6 6 2.2131 1.3743 2.4727 7 1 2.8859 0.5473 2.3001 8 6 1.8870 1.7403 3.7614 9 7 1.0680 2.7476 3.9717 10 14 2.6095 0.8062 5.2089 11 1 4.0907 0.9047 5.1718 12 1 2.1063 1.3925 6.4771 13 1 2.2059 -0.6207 5.1282 14 6 3.5652 1.4442 -0.1204 15 1 3.9974 0.9051 0.7226 16 6 4.0764 2.8876 -0.1211 17 6 5.5968 2.8821 -0.3022 18 6 5.9480 2.1587 -1.6042 19 7 5.4382 0.7824 -1.5537 20 6 3.9753 0.7623 -1.4277 21 1 -0.3633 -1.0226 -0.1014 22 1 -0.3634 0.4234 0.9364 23 1 -0.3633 0.5992 -0.8349 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.0049 3.1519 1.3105 27 1 0.5436 2.1382 1.3848 28 1 0.8389 3.0053 4.8782 29 1 3.6139 3.4374 -0.9407 30 1 3.8231 3.3641 0.8260 31 1 5.9617 3.9083 -0.3462 32 1 6.0616 2.3665 0.5381 33 1 5.4944 2.6834 -2.4450 34 1 7.0307 2.1406 -1.7289 35 1 5.8728 0.2631 -0.8058 36 1 3.6252 -0.2699 -1.4243 37 1 3.5309 1.2936 -2.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260545901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -54.487639 kcal Electronic energy + Delta-G solvation = -14983.732271 eV Core-core repulsion = 12758.482495 eV Total energy + Delta-G solvation = -2225.249776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28508 -37.10412 -34.42617 -32.66244 -31.58587 -29.94808 -26.66997 -25.22614 -23.59414 -23.22146 -21.16018 -20.52878 -18.04065 -16.93821 -16.59114 -15.88685 -15.72859 -15.14874 -14.97249 -14.63368 -14.09628 -13.88612 -13.38359 -13.20245 -13.01046 -12.86402 -12.60695 -12.54507 -12.23281 -12.19618 -11.96537 -11.75912 -11.65122 -11.49483 -10.91256 -10.72356 -10.65434 -10.42552 -9.13874 -8.12616 -6.18082 1.38080 1.39318 1.46480 2.42647 3.21252 3.48802 3.86831 4.05960 4.14578 4.21050 4.39082 4.42142 4.54557 4.59141 4.72139 4.79385 4.88512 4.90206 5.03689 5.07782 5.12735 5.17760 5.28328 5.29690 5.30620 5.48652 5.53856 5.57537 5.64449 5.78729 5.84392 5.96213 6.16954 6.38304 6.53623 6.97198 7.48054 8.99294 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.010579 C = 0.008898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.806510 B = 2646.030652 C = 3146.069169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.067 4.067 4 H 0.048 0.952 5 C 0.032 3.968 6 C -0.501 4.501 7 H 0.060 0.940 8 C -0.003 4.003 9 N -0.937 5.937 10 Si 0.948 3.052 11 H -0.270 1.270 12 H -0.290 1.290 13 H -0.269 1.269 14 C -0.098 4.098 15 H 0.053 0.947 16 C -0.111 4.111 17 C -0.151 4.151 18 C 0.062 3.938 19 N -0.687 5.687 20 C 0.067 3.933 21 H 0.061 0.939 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.048 0.952 26 H -0.015 1.015 27 H -0.010 1.010 28 H 0.258 0.742 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.342 0.658 36 H 0.080 0.920 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -3.670 -10.200 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.086 4.086 4 H 0.066 0.934 5 C -0.005 4.005 6 C -0.539 4.539 7 H 0.078 0.922 8 C -0.200 4.200 9 N -0.579 5.579 10 Si 0.774 3.226 11 H -0.196 1.196 12 H -0.215 1.215 13 H -0.194 1.194 14 C -0.119 4.119 15 H 0.071 0.929 16 C -0.148 4.148 17 C -0.190 4.190 18 C -0.068 4.068 19 N -0.315 5.315 20 C -0.063 4.063 21 H 0.080 0.920 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.003 0.997 27 H 0.009 0.991 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.099 0.901 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.924 -3.665 -10.779 13.325 hybrid contribution -0.274 0.397 2.391 2.439 sum 6.650 -3.268 -8.388 11.192 Atomic orbital electron populations 1.21689 0.96608 1.01112 1.00588 1.21479 0.95563 0.96236 1.01027 1.21055 0.94635 0.96231 0.96709 0.93359 1.19058 0.94584 0.94140 0.92738 1.21482 1.26261 1.14889 0.91294 0.92171 1.25845 0.95994 0.96213 1.01919 1.70094 1.37094 1.29480 1.21239 0.85758 0.78916 0.79164 0.78779 1.19564 1.21534 1.19367 1.21660 0.95589 0.96168 0.98444 0.92851 1.21528 0.95920 0.96991 1.00399 1.22226 0.95469 1.01824 0.99483 1.22028 1.00673 0.88270 0.95782 1.60806 1.05603 1.14022 1.51033 1.22103 0.87976 1.00832 0.95344 0.92001 0.95221 0.92740 0.90883 0.93289 0.99671 0.99136 0.93359 0.92632 0.94501 0.91033 0.92969 0.90921 0.89311 0.84112 0.90125 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.52 71.98 0.69 -4.31 16 2 C -0.11 -3.79 5.01 30.60 0.15 -3.63 16 3 C -0.07 -2.65 1.74 -10.79 -0.02 -2.66 16 4 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.03 1.63 4.17 29.85 0.12 1.75 16 6 C -0.50 -27.35 7.57 25.60 0.19 -27.16 16 7 H 0.06 3.17 5.72 -2.91 -0.02 3.15 16 8 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 9 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 10 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C -0.10 -3.45 1.67 -10.74 -0.02 -3.46 16 15 H 0.05 2.12 6.57 -2.39 -0.02 2.11 16 16 C -0.11 -3.87 4.86 30.67 0.15 -3.72 16 17 C -0.15 -4.20 6.08 30.65 0.19 -4.01 16 18 C 0.06 1.45 6.55 86.33 0.57 2.02 16 19 N -0.69 -17.33 6.87 -514.01 -3.53 -20.86 16 20 C 0.07 1.87 5.47 86.33 0.47 2.35 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 2.15 6.21 -2.39 -0.01 2.14 16 25 H 0.05 1.97 6.54 -2.39 -0.02 1.95 16 26 H -0.01 -0.84 6.45 -2.39 -0.02 -0.86 16 27 H -0.01 -0.55 6.72 -2.38 -0.02 -0.57 16 28 H 0.26 15.07 8.31 -92.72 -0.77 14.30 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.57 6.56 -2.39 -0.02 1.56 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.34 8.30 8.86 -89.70 -0.79 7.51 16 36 H 0.08 2.15 6.38 -2.39 -0.02 2.13 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -61.50 277.55 1.98 -59.52 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.24 Total: 14.41 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 2.96 Total: -42.57 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.24 Total: -77.98 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.50 1.98 -59.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.035 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds