Wall clock time and date at job start Mon Mar 30 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47347 * 2 1 4 4 H 1.08992 * 109.47198 * 174.78084 * 3 2 1 5 5 C 1.53000 * 109.46724 * 54.77802 * 3 2 1 6 6 C 1.50695 * 109.47053 * 65.00136 * 5 3 2 7 7 H 1.08004 * 120.00263 * 359.97438 * 6 5 3 8 8 C 1.37877 * 120.00044 * 179.97438 * 6 5 3 9 9 N 1.31517 * 119.99795 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46952 * 269.99905 * 10 8 6 12 12 H 1.48497 * 109.47114 * 29.99931 * 10 8 6 13 13 H 1.48502 * 109.47123 * 149.99924 * 10 8 6 14 14 C 1.52997 * 109.47002 * 294.77888 * 3 2 1 15 15 H 1.09001 * 110.33284 * 185.08930 * 14 3 2 16 16 C 1.54904 * 110.37631 * 307.34698 * 14 3 2 17 17 C 1.55259 * 101.60137 * 155.81670 * 16 14 3 18 18 C 1.54315 * 103.08507 * 324.48477 * 17 16 14 19 19 N 1.47448 * 107.23335 * 22.20695 * 18 17 16 20 20 C 1.46903 * 111.00257 * 123.25340 * 19 18 17 21 21 H 1.08997 * 109.47255 * 68.13258 * 1 2 3 22 22 H 1.08996 * 109.46852 * 188.13118 * 1 2 3 23 23 H 1.08997 * 109.46876 * 308.12832 * 1 2 3 24 24 H 1.09004 * 109.47110 * 240.00178 * 2 1 3 25 25 H 1.09001 * 109.47213 * 120.00422 * 2 1 3 26 26 H 1.09000 * 109.47223 * 304.99941 * 5 3 2 27 27 H 1.09006 * 109.46873 * 184.99867 * 5 3 2 28 28 H 0.97000 * 119.99828 * 179.97438 * 9 8 6 29 29 H 1.09002 * 110.98610 * 273.98904 * 16 14 3 30 30 H 1.08999 * 110.99477 * 37.80214 * 16 14 3 31 31 H 1.09000 * 110.74456 * 206.04744 * 17 16 14 32 32 H 1.09001 * 110.75585 * 82.93164 * 17 16 14 33 33 H 1.08996 * 109.89286 * 262.79559 * 18 17 16 34 34 H 1.09001 * 109.88838 * 141.60616 * 18 17 16 35 35 H 1.09002 * 109.46933 * 299.16298 * 20 19 18 36 36 H 1.08999 * 109.46623 * 59.15675 * 20 19 18 37 37 H 1.08997 * 109.47127 * 179.15850 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 0.0935 5 6 1.4257 2.2006 1.1784 6 6 1.9182 1.6036 2.4714 7 1 2.6008 0.7668 2.4545 8 6 1.4974 2.1255 3.6762 9 7 0.6665 3.1448 3.6969 10 14 2.1085 1.3859 5.2790 11 1 1.1859 0.3045 5.7086 12 1 3.4689 0.8255 5.0786 13 1 2.1563 2.4400 6.3240 14 6 1.6401 2.1248 -1.3097 15 1 2.0728 3.1238 -1.3638 16 6 2.0944 1.2740 -2.5218 17 6 1.1034 1.7428 -3.6212 18 6 -0.2034 1.9799 -2.8357 19 7 0.1677 2.1947 -1.4249 20 6 -0.3378 3.4852 -0.9381 21 1 -0.3633 0.3827 -0.9537 22 1 -0.3633 -1.0173 0.1454 23 1 -0.3633 0.6345 0.8084 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.3393 2.1237 1.1333 27 1 1.7181 3.2495 1.1279 28 1 0.3702 3.5118 4.5445 29 1 3.1235 1.5048 -2.7971 30 1 1.9756 0.2097 -2.3183 31 1 0.9655 0.9660 -4.3733 32 1 1.4486 2.6677 -4.0834 33 1 -0.8505 1.1069 -2.9201 34 1 -0.7142 2.8615 -3.2230 35 1 0.0976 4.2918 -1.5280 36 1 -1.4232 3.5098 -1.0343 37 1 -0.0628 3.6115 0.1090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:12 Heat of formation + Delta-G solvation = 0.170504 kcal Electronic energy + Delta-G solvation = -15245.877261 eV Core-core repulsion = 13022.997640 eV Total energy + Delta-G solvation = -2222.879621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31382 -34.82016 -32.27707 -31.65969 -29.06769 -27.74977 -25.23010 -24.27907 -22.67601 -20.60726 -20.46223 -17.86279 -16.48819 -15.71852 -14.89995 -14.45340 -14.00737 -13.59088 -13.47198 -12.61455 -12.45665 -12.27021 -11.77285 -11.70203 -11.20053 -10.97526 -10.95616 -10.85453 -10.63900 -10.54915 -10.43127 -10.31911 -9.88304 -9.61323 -9.41622 -8.82447 -8.67438 -8.19465 -7.50235 -5.88933 -3.88030 3.37881 3.44059 3.47283 4.48541 4.54955 4.95611 5.04278 5.24543 5.47228 5.63489 5.74000 5.84300 5.92816 5.99357 6.01142 6.09787 6.18527 6.20263 6.26152 6.41976 6.51654 6.66979 6.68308 6.96873 7.03952 7.08059 7.23510 7.48693 7.59071 7.60992 7.68328 7.84595 8.04897 8.20849 8.59421 9.18633 9.74139 11.22330 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047070 B = 0.008972 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.709666 B = 3120.119129 C = 3334.733933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.069 4.069 4 H 0.052 0.948 5 C 0.026 3.974 6 C -0.508 4.508 7 H 0.052 0.948 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.276 1.276 13 H -0.289 1.289 14 C 0.079 3.921 15 H 0.045 0.955 16 C -0.134 4.134 17 C -0.142 4.142 18 C 0.038 3.962 19 N -0.507 5.507 20 C 0.010 3.990 21 H 0.080 0.920 22 H 0.012 0.988 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.004 0.996 28 H 0.257 0.743 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.013 0.987 36 H 0.057 0.943 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -2.120 -12.247 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.088 4.088 4 H 0.070 0.930 5 C -0.011 4.011 6 C -0.547 4.547 7 H 0.070 0.930 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.201 1.201 13 H -0.215 1.215 14 C -0.029 4.029 15 H 0.063 0.937 16 C -0.172 4.172 17 C -0.180 4.180 18 C -0.090 4.090 19 N -0.231 5.231 20 C -0.138 4.138 21 H 0.098 0.902 22 H 0.031 0.969 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.022 0.978 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.652 -2.368 -11.812 12.064 hybrid contribution 0.680 0.387 0.519 0.939 sum 0.028 -1.981 -11.292 11.465 Atomic orbital electron populations 1.22067 0.95753 0.98209 1.04576 1.21329 0.97017 0.96090 0.98915 1.21146 0.98333 0.95537 0.93823 0.92974 1.19312 0.97507 0.93839 0.90414 1.21306 1.26782 1.15385 0.91187 0.92958 1.24975 0.95435 0.95164 0.98894 1.69954 1.33717 1.24420 1.25685 0.86703 0.79178 0.78811 0.83942 1.20833 1.20085 1.21460 1.22732 0.86738 0.97395 0.96022 0.93721 1.22965 0.98071 1.01631 0.94490 1.22772 0.96403 1.00736 0.98094 1.22839 0.96830 1.00707 0.88668 1.63779 1.11614 1.31267 1.16422 1.22811 0.99446 0.88580 1.02998 0.90164 0.96855 0.91440 0.94706 0.92863 0.93968 0.97755 0.93301 0.91694 0.89715 0.91501 0.92251 0.91031 0.93500 0.96822 0.92394 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.71 37.16 0.32 -2.61 16 2 C -0.10 -1.90 5.17 -26.73 -0.14 -2.03 16 3 C -0.07 -1.44 2.26 -90.62 -0.21 -1.65 16 4 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.03 0.65 2.62 -27.89 -0.07 0.58 16 6 C -0.51 -14.29 8.47 -34.44 -0.29 -14.58 16 7 H 0.05 1.45 7.06 -52.48 -0.37 1.08 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.08 1.39 2.39 -66.19 -0.16 1.23 16 15 H 0.04 0.82 7.77 -51.93 -0.40 0.41 16 16 C -0.13 -1.92 6.36 -24.53 -0.16 -2.08 16 17 C -0.14 -1.77 6.94 -24.85 -0.17 -1.94 16 18 C 0.04 0.52 6.43 -2.83 -0.02 0.50 16 19 N -0.51 -8.60 1.57 -231.59 -0.36 -8.96 16 20 C 0.01 0.17 8.66 60.07 0.52 0.69 16 21 H 0.08 1.47 4.72 -51.93 -0.25 1.23 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 1.55 5.78 -51.93 -0.30 1.25 16 24 H 0.03 0.60 5.69 -51.93 -0.30 0.31 16 25 H 0.05 1.14 7.11 -51.93 -0.37 0.77 16 26 H 0.04 1.12 4.26 -51.93 -0.22 0.90 16 27 H 0.00 0.12 7.75 -51.93 -0.40 -0.29 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.24 5.46 -51.93 -0.28 0.96 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 34 H 0.05 0.60 7.58 -51.93 -0.39 0.21 16 35 H 0.01 0.21 8.09 -51.93 -0.42 -0.21 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.99 5.19 -51.93 -0.27 1.73 16 LS Contribution 270.53 15.07 4.08 4.08 Total: -1.00 -29.07 270.53 -7.08 -36.15 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.05 Total: -1.71 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.47 Total: -20.39 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.37 Total: -35.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.07 -7.08 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.321 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds