Wall clock time and date at job start Mon Mar 30 2020 03:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47347 * 2 1 4 4 H 1.08992 * 109.47198 * 174.78084 * 3 2 1 5 5 C 1.53000 * 109.46724 * 54.77802 * 3 2 1 6 6 C 1.50695 * 109.47053 * 65.00136 * 5 3 2 7 7 H 1.08004 * 120.00263 * 359.97438 * 6 5 3 8 8 C 1.37877 * 120.00044 * 179.97438 * 6 5 3 9 9 N 1.31517 * 119.99795 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46952 * 269.99905 * 10 8 6 12 12 H 1.48497 * 109.47114 * 29.99931 * 10 8 6 13 13 H 1.48502 * 109.47123 * 149.99924 * 10 8 6 14 14 C 1.52997 * 109.47002 * 294.77888 * 3 2 1 15 15 H 1.09001 * 110.33284 * 185.08930 * 14 3 2 16 16 C 1.54904 * 110.37631 * 307.34698 * 14 3 2 17 17 C 1.55259 * 101.60137 * 155.81670 * 16 14 3 18 18 C 1.54315 * 103.08507 * 324.48477 * 17 16 14 19 19 N 1.47448 * 107.23335 * 22.20695 * 18 17 16 20 20 C 1.46903 * 111.00257 * 123.25340 * 19 18 17 21 21 H 1.08997 * 109.47255 * 68.13258 * 1 2 3 22 22 H 1.08996 * 109.46852 * 188.13118 * 1 2 3 23 23 H 1.08997 * 109.46876 * 308.12832 * 1 2 3 24 24 H 1.09004 * 109.47110 * 240.00178 * 2 1 3 25 25 H 1.09001 * 109.47213 * 120.00422 * 2 1 3 26 26 H 1.09000 * 109.47223 * 304.99941 * 5 3 2 27 27 H 1.09006 * 109.46873 * 184.99867 * 5 3 2 28 28 H 0.97000 * 119.99828 * 179.97438 * 9 8 6 29 29 H 1.09002 * 110.98610 * 273.98904 * 16 14 3 30 30 H 1.08999 * 110.99477 * 37.80214 * 16 14 3 31 31 H 1.09000 * 110.74456 * 206.04744 * 17 16 14 32 32 H 1.09001 * 110.75585 * 82.93164 * 17 16 14 33 33 H 1.08996 * 109.89286 * 262.79559 * 18 17 16 34 34 H 1.09001 * 109.88838 * 141.60616 * 18 17 16 35 35 H 1.09002 * 109.46933 * 299.16298 * 20 19 18 36 36 H 1.08999 * 109.46623 * 59.15675 * 20 19 18 37 37 H 1.08997 * 109.47127 * 179.15850 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 0.0935 5 6 1.4257 2.2006 1.1784 6 6 1.9182 1.6036 2.4714 7 1 2.6008 0.7668 2.4545 8 6 1.4974 2.1255 3.6762 9 7 0.6665 3.1448 3.6969 10 14 2.1085 1.3859 5.2790 11 1 1.1859 0.3045 5.7086 12 1 3.4689 0.8255 5.0786 13 1 2.1563 2.4400 6.3240 14 6 1.6401 2.1248 -1.3097 15 1 2.0728 3.1238 -1.3638 16 6 2.0944 1.2740 -2.5218 17 6 1.1034 1.7428 -3.6212 18 6 -0.2034 1.9799 -2.8357 19 7 0.1677 2.1947 -1.4249 20 6 -0.3378 3.4852 -0.9381 21 1 -0.3633 0.3827 -0.9537 22 1 -0.3633 -1.0173 0.1454 23 1 -0.3633 0.6345 0.8084 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.3393 2.1237 1.1333 27 1 1.7181 3.2495 1.1279 28 1 0.3702 3.5118 4.5445 29 1 3.1235 1.5048 -2.7971 30 1 1.9756 0.2097 -2.3183 31 1 0.9655 0.9660 -4.3733 32 1 1.4486 2.6677 -4.0834 33 1 -0.8505 1.1069 -2.9201 34 1 -0.7142 2.8615 -3.2230 35 1 0.0976 4.2918 -1.5280 36 1 -1.4232 3.5098 -1.0343 37 1 -0.0628 3.6115 0.1090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:11 Heat of formation + Delta-G solvation = -15.532011 kcal Electronic energy + Delta-G solvation = -15246.558174 eV Core-core repulsion = 13022.997640 eV Total energy + Delta-G solvation = -2223.560533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67770 -36.48942 -34.32616 -32.93474 -30.64669 -29.50059 -26.58346 -26.03150 -24.48420 -22.06807 -21.66719 -19.43858 -18.44550 -17.25110 -16.51678 -16.19694 -15.62189 -15.02795 -14.73924 -14.34576 -13.98525 -13.72876 -13.45507 -13.10591 -13.02565 -12.90130 -12.41262 -12.31372 -12.21551 -12.11611 -11.97616 -11.76789 -11.42831 -11.28664 -11.15836 -10.69876 -10.52176 -10.36999 -8.85900 -8.10813 -6.17660 1.39022 1.39843 1.50105 2.44618 3.19679 3.22141 3.83386 3.87495 4.17289 4.33058 4.46905 4.49218 4.58896 4.63016 4.68143 4.76551 4.83100 5.02164 5.03408 5.10470 5.18111 5.20590 5.32186 5.34635 5.37729 5.45728 5.56148 5.62952 5.83153 5.94121 6.00245 6.13562 6.28801 6.35600 6.42674 7.00039 7.48602 9.00107 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047070 B = 0.008972 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.709666 B = 3120.119129 C = 3334.733933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.067 4.067 4 H 0.044 0.956 5 C 0.040 3.960 6 C -0.525 4.525 7 H 0.051 0.949 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.952 3.048 11 H -0.276 1.276 12 H -0.267 1.267 13 H -0.284 1.284 14 C 0.079 3.921 15 H 0.031 0.969 16 C -0.127 4.127 17 C -0.131 4.131 18 C 0.034 3.966 19 N -0.522 5.522 20 C 0.018 3.982 21 H 0.097 0.903 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.026 0.974 27 H -0.031 1.031 28 H 0.259 0.741 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -3.453 -13.970 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.086 4.086 4 H 0.062 0.938 5 C 0.003 3.997 6 C -0.563 4.563 7 H 0.069 0.931 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.778 3.222 11 H -0.201 1.201 12 H -0.191 1.191 13 H -0.210 1.210 14 C -0.029 4.029 15 H 0.049 0.951 16 C -0.165 4.165 17 C -0.169 4.169 18 C -0.093 4.093 19 N -0.246 5.246 20 C -0.130 4.130 21 H 0.115 0.885 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.044 0.956 27 H -0.013 1.013 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.347 -3.710 -13.548 14.052 hybrid contribution 0.561 0.830 1.046 1.448 sum 0.214 -2.880 -12.502 12.831 Atomic orbital electron populations 1.21959 0.95675 0.98117 1.03821 1.21288 0.96946 0.95143 0.99447 1.21028 0.97474 0.96171 0.93937 0.93782 1.19115 0.96639 0.92218 0.91734 1.21721 1.26588 1.15321 0.92696 0.93052 1.25835 0.95662 0.95624 1.02601 1.70093 1.34918 1.25741 1.26543 0.85645 0.78973 0.78095 0.79527 1.20147 1.19123 1.20980 1.22596 0.87468 0.97103 0.95730 0.95066 1.22920 0.99436 1.00819 0.93301 1.22743 0.94484 1.01992 0.97682 1.22947 0.97983 1.01677 0.86687 1.63643 1.11091 1.30831 1.19085 1.22620 1.00321 0.89580 1.00502 0.88468 0.95532 0.95560 0.91250 0.95151 0.95582 1.01254 0.93256 0.90304 0.89547 0.88870 0.91409 0.90032 0.92348 0.95692 0.91029 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.71 71.98 0.63 -4.74 16 2 C -0.09 -3.51 5.17 30.60 0.16 -3.35 16 3 C -0.07 -2.81 2.26 -10.79 -0.02 -2.84 16 4 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 5 C 0.04 2.10 2.62 29.85 0.08 2.18 16 6 C -0.52 -30.45 8.47 25.60 0.22 -30.24 16 7 H 0.05 2.92 7.06 -2.91 -0.02 2.90 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 10 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 14 C 0.08 2.72 2.39 45.38 0.11 2.83 16 15 H 0.03 1.15 7.77 -2.39 -0.02 1.13 16 16 C -0.13 -3.24 6.36 32.02 0.20 -3.04 16 17 C -0.13 -2.72 6.94 31.82 0.22 -2.50 16 18 C 0.03 0.84 6.43 86.64 0.56 1.40 16 19 N -0.52 -17.21 1.57 -886.63 -1.39 -18.59 16 20 C 0.02 0.64 8.66 127.69 1.11 1.75 16 21 H 0.10 3.40 4.72 -2.39 -0.01 3.39 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.03 1.21 5.78 -2.39 -0.01 1.20 16 24 H 0.07 2.21 5.69 -2.38 -0.01 2.20 16 25 H 0.03 1.28 7.11 -2.39 -0.02 1.27 16 26 H 0.03 1.47 4.26 -2.39 -0.01 1.46 16 27 H -0.03 -1.82 7.75 -2.38 -0.02 -1.84 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.19 5.46 -2.39 -0.01 2.17 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.87 7.72 -2.39 -0.02 1.85 16 34 H 0.06 1.31 7.58 -2.39 -0.02 1.30 16 35 H 0.02 0.79 8.09 -2.39 -0.02 0.77 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.27 5.19 -2.39 -0.01 2.26 16 Total: -1.00 -64.44 270.53 5.67 -58.77 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.03 Total: 7.51 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.71 Total: -38.11 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.10 Total: -76.04 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -64.44 5.67 -58.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.242 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds