Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46735 * 119.99682 * 2 1 3 5 5 H 1.08992 * 109.47391 * 53.76278 * 4 2 1 6 6 C 1.50701 * 109.46862 * 173.75912 * 4 2 1 7 7 H 1.07998 * 120.00065 * 114.62125 * 6 4 2 8 8 C 1.37881 * 119.99992 * 294.62228 * 6 4 2 9 9 N 1.31512 * 119.99917 * 3.59468 * 8 6 4 10 10 Si 1.86801 * 119.99876 * 183.60057 * 8 6 4 11 11 H 1.48505 * 109.47181 * 89.99961 * 10 8 6 12 12 H 1.48500 * 109.46800 * 209.99377 * 10 8 6 13 13 H 1.48494 * 109.47393 * 329.99570 * 10 8 6 14 14 C 1.52998 * 109.47121 * 293.75712 * 4 2 1 15 15 H 1.08999 * 109.46581 * 304.15025 * 14 4 2 16 16 C 1.53042 * 109.45989 * 184.18483 * 14 4 2 17 17 C 1.53120 * 109.27590 * 180.80662 * 16 14 4 18 18 C 1.53116 * 109.16215 * 57.65367 * 17 16 14 19 19 C 1.53036 * 109.27781 * 302.33963 * 18 17 16 20 20 N 1.46844 * 109.46431 * 64.13120 * 14 4 2 21 21 H 1.09002 * 109.46611 * 69.55476 * 1 2 3 22 22 H 1.08998 * 109.47737 * 309.55570 * 1 2 3 23 23 H 1.09001 * 109.47037 * 189.54961 * 1 2 3 24 24 H 1.08998 * 109.47350 * 240.00066 * 2 1 3 25 25 H 1.08996 * 109.46835 * 183.37810 * 3 2 1 26 26 H 1.08998 * 109.46707 * 303.37550 * 3 2 1 27 27 H 1.09004 * 109.47115 * 63.37678 * 3 2 1 28 28 H 0.96997 * 120.00062 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.50418 * 300.74491 * 16 14 4 30 30 H 1.08995 * 109.50584 * 60.86617 * 16 14 4 31 31 H 1.09006 * 109.52192 * 297.74350 * 17 16 14 32 32 H 1.09004 * 109.57562 * 177.59091 * 17 16 14 33 33 H 1.09007 * 109.50333 * 182.40576 * 18 17 16 34 34 H 1.08994 * 109.50528 * 62.28406 * 18 17 16 35 35 H 1.08994 * 109.47012 * 299.16913 * 19 18 17 36 36 H 1.09003 * 109.46504 * 179.19231 * 19 18 17 37 37 H 1.00901 * 111.00178 * 57.65715 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5883 -1.7115 1.3070 6 6 3.5390 -0.8564 1.1745 7 1 4.1640 -0.3399 1.8879 8 6 4.1126 -1.6395 0.1953 9 7 3.3565 -2.2114 -0.7161 10 14 5.9637 -1.8882 0.1635 11 1 6.3170 -3.0804 0.9754 12 1 6.4115 -2.0931 -1.2375 13 1 6.6341 -0.6891 0.7271 14 6 1.6620 0.0850 2.4935 15 1 2.0519 1.0987 2.4018 16 6 2.2613 -0.5812 3.7342 17 6 1.8638 0.2175 4.9786 18 6 0.3367 0.2933 5.0606 19 6 -0.2067 0.9342 3.7816 20 7 0.1998 0.1327 2.6201 21 1 -0.3632 0.3590 -0.9630 22 1 -0.3634 0.6544 0.7923 23 1 -0.3633 -1.0134 0.1705 24 1 1.8934 -0.5138 -0.8900 25 1 3.1283 1.4431 -0.0606 26 1 1.6281 1.9735 -0.8582 27 1 1.7269 1.9386 0.9187 28 1 3.7599 -2.7626 -1.4048 29 1 1.8826 -1.5997 3.8192 30 1 3.3476 -0.6024 3.6470 31 1 2.2755 1.2246 4.9119 32 1 2.2524 -0.2765 5.8692 33 1 0.0480 0.8969 5.9211 34 1 -0.0723 -0.7114 5.1664 35 1 0.1919 1.9439 3.6835 36 1 -1.2948 0.9766 3.8306 37 1 -0.1896 -0.7969 2.6681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = -22.700961 kcal Electronic energy + Delta-G solvation = -15326.037454 eV Core-core repulsion = 13102.166052 eV Total energy + Delta-G solvation = -2223.871402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70390 -35.26437 -32.07185 -30.96085 -30.36883 -26.82290 -25.79273 -23.41991 -22.68356 -21.07499 -19.74253 -18.17995 -16.12823 -15.11610 -14.49645 -14.27275 -14.06954 -13.36865 -13.35228 -12.75006 -12.44669 -12.14789 -11.79327 -11.44911 -11.28046 -10.99572 -10.90215 -10.63142 -10.55774 -10.49687 -10.22195 -10.07283 -9.68616 -9.48662 -9.32218 -8.80495 -8.62273 -8.18389 -7.32972 -5.91554 -3.95441 3.32959 3.40477 3.42612 4.47289 4.99104 5.18194 5.35087 5.38997 5.48176 5.78009 5.91220 5.97117 6.12789 6.21381 6.31516 6.44421 6.47869 6.59763 6.61648 6.65365 6.78883 6.84147 6.99348 7.02591 7.17884 7.25153 7.42841 7.61697 7.73975 7.84943 7.89729 8.01894 8.13717 8.35180 8.57333 9.07718 9.67161 11.14726 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031651 B = 0.011633 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.445727 B = 2406.454747 C = 2970.710929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.127 4.127 4 C 0.066 3.934 5 H 0.024 0.976 6 C -0.504 4.504 7 H 0.054 0.946 8 C 0.063 3.937 9 N -0.887 5.887 10 Si 0.883 3.117 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.092 3.908 15 H 0.072 0.928 16 C -0.141 4.141 17 C -0.121 4.121 18 C -0.155 4.155 19 C 0.054 3.946 20 N -0.671 5.671 21 H 0.012 0.988 22 H 0.082 0.918 23 H 0.031 0.969 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.038 0.962 28 H 0.258 0.742 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 4.395 7.216 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.184 4.184 4 C 0.047 3.953 5 H 0.042 0.958 6 C -0.543 4.543 7 H 0.072 0.928 8 C -0.139 4.139 9 N -0.526 5.526 10 Si 0.711 3.289 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.017 4.017 15 H 0.090 0.910 16 C -0.181 4.181 17 C -0.159 4.159 18 C -0.195 4.195 19 C -0.076 4.076 20 N -0.299 5.299 21 H 0.031 0.969 22 H 0.101 0.899 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.889 4.812 6.596 9.517 hybrid contribution 1.358 -0.886 0.716 1.773 sum -3.531 3.925 7.312 9.019 Atomic orbital electron populations 1.22161 0.98154 1.00767 0.99313 1.20976 0.92365 0.94384 1.02251 1.21727 1.00693 0.97723 0.98266 1.18700 0.94944 0.93328 0.88355 0.95795 1.21121 0.91529 1.28248 1.13420 0.92806 1.24913 0.97279 0.96043 0.95617 1.69919 1.34574 1.32793 1.15268 0.86742 0.86626 0.78409 0.77079 1.20930 1.21428 1.20058 1.21868 0.84426 1.00020 0.95368 0.91027 1.22198 1.02764 0.98485 0.94616 1.21628 0.95119 1.00429 0.98718 1.22256 0.96970 1.00842 0.99392 1.22003 0.99063 0.98003 0.88529 1.61144 1.11814 1.18697 1.38208 0.96920 0.89932 0.95005 0.89740 0.93174 0.96100 0.94259 0.93222 0.92996 0.90582 0.92639 0.93211 0.92797 0.92563 0.91707 0.91920 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.21 37.16 0.30 -2.72 16 2 C -0.08 -1.88 2.58 -90.62 -0.23 -2.12 16 3 C -0.13 -2.73 8.55 37.16 0.32 -2.42 16 4 C 0.07 1.55 1.36 -91.77 -0.12 1.43 16 5 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 6 C -0.50 -13.19 6.75 -34.44 -0.23 -13.42 16 7 H 0.05 1.40 6.64 -52.49 -0.35 1.05 16 8 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 9 N -0.89 -25.16 11.56 55.43 0.64 -24.52 16 10 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.09 1.82 1.58 -67.72 -0.11 1.71 16 15 H 0.07 1.49 6.01 -51.93 -0.31 1.18 16 16 C -0.14 -2.63 5.03 -26.65 -0.13 -2.76 16 17 C -0.12 -1.85 6.00 -26.61 -0.16 -2.01 16 18 C -0.16 -2.12 6.08 -26.65 -0.16 -2.28 16 19 C 0.05 0.78 6.55 -3.83 -0.03 0.75 16 20 N -0.67 -11.48 3.00 -106.76 -0.32 -11.80 16 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 22 H 0.08 1.60 5.71 -51.93 -0.30 1.31 16 23 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 24 H 0.08 2.29 6.25 -51.93 -0.32 1.96 16 25 H 0.05 1.14 7.53 -51.93 -0.39 0.75 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.79 6.04 -51.93 -0.31 0.48 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.54 6.51 -51.93 -0.34 1.20 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.33 5.70 8.79 -39.29 -0.35 5.35 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -26.65 274.69 -7.66 -34.31 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.45 Total: 3.97 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -0.65 Total: -22.23 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.32 Total: -36.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.65 -7.66 -34.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.613 kcal (2) G-P(sol) polarization free energy of solvation -26.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds