Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46735 * 119.99682 * 2 1 3 5 5 H 1.08992 * 109.47391 * 53.76278 * 4 2 1 6 6 C 1.50701 * 109.46862 * 173.75912 * 4 2 1 7 7 H 1.07998 * 120.00065 * 114.62125 * 6 4 2 8 8 C 1.37881 * 119.99992 * 294.62228 * 6 4 2 9 9 N 1.31512 * 119.99917 * 3.59468 * 8 6 4 10 10 Si 1.86801 * 119.99876 * 183.60057 * 8 6 4 11 11 H 1.48505 * 109.47181 * 89.99961 * 10 8 6 12 12 H 1.48500 * 109.46800 * 209.99377 * 10 8 6 13 13 H 1.48494 * 109.47393 * 329.99570 * 10 8 6 14 14 C 1.52998 * 109.47121 * 293.75712 * 4 2 1 15 15 H 1.08999 * 109.46581 * 304.15025 * 14 4 2 16 16 C 1.53042 * 109.45989 * 184.18483 * 14 4 2 17 17 C 1.53120 * 109.27590 * 180.80662 * 16 14 4 18 18 C 1.53116 * 109.16215 * 57.65367 * 17 16 14 19 19 C 1.53036 * 109.27781 * 302.33963 * 18 17 16 20 20 N 1.46844 * 109.46431 * 64.13120 * 14 4 2 21 21 H 1.09002 * 109.46611 * 69.55476 * 1 2 3 22 22 H 1.08998 * 109.47737 * 309.55570 * 1 2 3 23 23 H 1.09001 * 109.47037 * 189.54961 * 1 2 3 24 24 H 1.08998 * 109.47350 * 240.00066 * 2 1 3 25 25 H 1.08996 * 109.46835 * 183.37810 * 3 2 1 26 26 H 1.08998 * 109.46707 * 303.37550 * 3 2 1 27 27 H 1.09004 * 109.47115 * 63.37678 * 3 2 1 28 28 H 0.96997 * 120.00062 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.50418 * 300.74491 * 16 14 4 30 30 H 1.08995 * 109.50584 * 60.86617 * 16 14 4 31 31 H 1.09006 * 109.52192 * 297.74350 * 17 16 14 32 32 H 1.09004 * 109.57562 * 177.59091 * 17 16 14 33 33 H 1.09007 * 109.50333 * 182.40576 * 18 17 16 34 34 H 1.08994 * 109.50528 * 62.28406 * 18 17 16 35 35 H 1.08994 * 109.47012 * 299.16913 * 19 18 17 36 36 H 1.09003 * 109.46504 * 179.19231 * 19 18 17 37 37 H 1.00901 * 111.00178 * 57.65715 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5883 -1.7115 1.3070 6 6 3.5390 -0.8564 1.1745 7 1 4.1640 -0.3399 1.8879 8 6 4.1126 -1.6395 0.1953 9 7 3.3565 -2.2114 -0.7161 10 14 5.9637 -1.8882 0.1635 11 1 6.3170 -3.0804 0.9754 12 1 6.4115 -2.0931 -1.2375 13 1 6.6341 -0.6891 0.7271 14 6 1.6620 0.0850 2.4935 15 1 2.0519 1.0987 2.4018 16 6 2.2613 -0.5812 3.7342 17 6 1.8638 0.2175 4.9786 18 6 0.3367 0.2933 5.0606 19 6 -0.2067 0.9342 3.7816 20 7 0.1998 0.1327 2.6201 21 1 -0.3632 0.3590 -0.9630 22 1 -0.3634 0.6544 0.7923 23 1 -0.3633 -1.0134 0.1705 24 1 1.8934 -0.5138 -0.8900 25 1 3.1283 1.4431 -0.0606 26 1 1.6281 1.9735 -0.8582 27 1 1.7269 1.9386 0.9187 28 1 3.7599 -2.7626 -1.4048 29 1 1.8826 -1.5997 3.8192 30 1 3.3476 -0.6024 3.6470 31 1 2.2755 1.2246 4.9119 32 1 2.2524 -0.2765 5.8692 33 1 0.0480 0.8969 5.9211 34 1 -0.0723 -0.7114 5.1664 35 1 0.1919 1.9439 3.6835 36 1 -1.2948 0.9766 3.8306 37 1 -0.1896 -0.7969 2.6681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -36.961150 kcal Electronic energy + Delta-G solvation = -15326.655822 eV Core-core repulsion = 13102.166052 eV Total energy + Delta-G solvation = -2224.489770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19811 -36.93001 -34.04602 -32.37573 -31.86452 -28.60890 -27.54475 -25.25973 -23.99858 -22.62942 -21.09016 -20.01034 -18.11857 -16.83439 -16.06456 -15.83611 -15.49509 -14.90529 -14.77905 -14.41082 -14.17754 -13.83056 -13.35231 -13.04482 -12.83489 -12.78690 -12.64061 -12.43466 -12.05315 -11.95859 -11.74808 -11.62118 -11.38289 -11.22326 -11.15456 -10.64749 -10.48457 -10.20692 -8.75196 -8.00238 -6.09218 1.40163 1.42312 1.50391 2.46747 3.28195 3.63553 3.98610 4.14053 4.25178 4.41718 4.56772 4.65886 4.75254 4.80321 4.82130 4.89908 5.05034 5.14009 5.16657 5.19892 5.25401 5.29296 5.36070 5.41681 5.49326 5.50685 5.64894 5.78947 5.83507 6.02142 6.09129 6.30142 6.44460 6.58106 6.74210 7.04000 7.56075 9.04850 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031651 B = 0.011633 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.445727 B = 2406.454747 C = 2970.710929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.117 4.117 4 C 0.067 3.933 5 H -0.013 1.013 6 C -0.508 4.508 7 H 0.051 0.949 8 C 0.013 3.987 9 N -0.917 5.917 10 Si 0.939 3.061 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.269 1.269 14 C 0.106 3.894 15 H 0.065 0.935 16 C -0.139 4.139 17 C -0.116 4.116 18 C -0.149 4.149 19 C 0.054 3.946 20 N -0.674 5.674 21 H 0.019 0.981 22 H 0.100 0.900 23 H 0.022 0.978 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.255 0.745 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 5.728 8.772 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.174 4.174 4 C 0.049 3.951 5 H 0.005 0.995 6 C -0.547 4.547 7 H 0.069 0.931 8 C -0.185 4.185 9 N -0.557 5.557 10 Si 0.766 3.234 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.193 1.193 14 C -0.003 4.003 15 H 0.083 0.917 16 C -0.178 4.178 17 C -0.154 4.154 18 C -0.188 4.188 19 C -0.076 4.076 20 N -0.302 5.302 21 H 0.038 0.962 22 H 0.119 0.881 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.619 6.156 8.170 11.671 hybrid contribution 1.561 -1.306 0.246 2.050 sum -4.059 4.849 8.416 10.527 Atomic orbital electron populations 1.22035 0.95900 1.00701 1.00397 1.20882 0.94284 0.94935 1.00083 1.21606 0.99278 0.96731 0.99772 1.18598 0.93408 0.92270 0.90861 0.99488 1.21444 0.93093 1.27445 1.12671 0.93050 1.25608 1.01032 0.96287 0.95610 1.70065 1.36011 1.33704 1.15928 0.85849 0.82266 0.78447 0.76846 1.20621 1.21549 1.19323 1.21492 0.86403 0.98576 0.93857 0.91661 1.22108 1.01081 0.98487 0.96163 1.21580 0.96733 0.99953 0.97095 1.22196 0.95224 1.01386 0.99964 1.22112 1.00527 0.97355 0.87571 1.61002 1.09719 1.19082 1.40431 0.96176 0.88121 0.95921 0.93950 0.95248 0.94523 0.92667 0.93581 0.94184 0.92962 0.92246 0.91988 0.90131 0.92480 0.91525 0.89547 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.21 71.98 0.59 -4.79 16 2 C -0.08 -3.90 2.58 -10.79 -0.03 -3.92 16 3 C -0.12 -4.95 8.55 71.98 0.62 -4.33 16 4 C 0.07 3.26 1.36 -11.54 -0.02 3.25 16 5 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 6 C -0.51 -27.13 6.75 25.60 0.17 -26.96 16 7 H 0.05 2.72 6.64 -2.91 -0.02 2.70 16 8 C 0.01 0.70 5.33 84.66 0.45 1.15 16 9 N -0.92 -53.77 11.56 21.45 0.25 -53.52 16 10 Si 0.94 44.12 29.54 68.60 2.03 46.15 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 C 0.11 4.12 1.58 44.94 0.07 4.19 16 15 H 0.07 2.63 6.01 -2.39 -0.01 2.62 16 16 C -0.14 -5.09 5.03 30.65 0.15 -4.94 16 17 C -0.12 -3.25 6.00 30.67 0.18 -3.07 16 18 C -0.15 -3.50 6.08 30.65 0.19 -3.32 16 19 C 0.05 1.35 6.55 86.32 0.57 1.92 16 20 N -0.67 -21.80 3.00 -491.68 -1.48 -23.28 16 21 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.10 3.69 5.71 -2.39 -0.01 3.68 16 23 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 24 H 0.04 2.36 6.25 -2.39 -0.01 2.35 16 25 H 0.03 1.33 7.53 -2.39 -0.02 1.31 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 2.14 6.04 -2.38 -0.01 2.12 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 2.13 6.51 -2.39 -0.02 2.11 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.33 10.95 8.79 -89.69 -0.79 10.16 16 Total: -1.00 -58.05 274.69 3.98 -54.06 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.24 Total: 17.41 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 2.95 Total: -40.82 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.23 Total: -76.80 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -58.05 3.98 -54.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.100 kcal (2) G-P(sol) polarization free energy of solvation -58.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds