Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47082 * 2 1 4 4 H 1.08994 * 110.05578 * 306.41784 * 3 2 1 5 5 C 1.53874 * 110.02978 * 67.83566 * 3 2 1 6 6 C 1.54266 * 106.60013 * 119.28234 * 5 3 2 7 7 C 1.54890 * 104.19548 * 23.61084 * 6 5 3 8 8 H 1.09004 * 110.76035 * 80.36929 * 7 6 5 9 9 N 1.46496 * 110.75593 * 203.74253 * 7 6 5 10 10 C 1.36934 * 120.00098 * 53.33027 * 9 7 6 11 11 H 1.07997 * 120.00170 * 322.56652 * 10 9 7 12 12 C 1.38817 * 120.00169 * 142.56701 * 10 9 7 13 13 N 1.31618 * 119.99690 * 158.45586 * 12 10 9 14 14 Si 1.86801 * 119.99989 * 338.46283 * 12 10 9 15 15 H 1.48493 * 109.47286 * 95.72374 * 14 12 10 16 16 H 1.48502 * 109.46798 * 215.72395 * 14 12 10 17 17 H 1.48506 * 109.46929 * 335.72020 * 14 12 10 18 18 C 1.46501 * 120.00089 * 233.32203 * 9 7 6 19 19 C 1.53002 * 109.46890 * 84.24541 * 18 9 7 20 20 C 1.54270 * 110.03402 * 185.00065 * 3 2 1 21 21 H 1.08999 * 109.46691 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46718 * 299.99661 * 1 2 3 23 23 H 1.08998 * 109.46868 * 59.99886 * 1 2 3 24 24 H 1.09005 * 109.47201 * 240.00422 * 2 1 3 25 25 H 1.09000 * 109.47384 * 120.00091 * 2 1 3 26 26 H 1.08999 * 110.03141 * 238.56939 * 5 3 2 27 27 H 1.08997 * 110.03439 * 0.02562 * 5 3 2 28 28 H 1.08999 * 110.48642 * 142.28624 * 6 5 3 29 29 H 1.08999 * 110.48930 * 264.80004 * 6 5 3 30 30 H 0.97008 * 119.99860 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47709 * 204.24346 * 18 9 7 32 32 H 1.09002 * 109.47367 * 324.24798 * 18 9 7 33 33 H 1.08992 * 109.46934 * 60.00002 * 19 18 9 34 34 H 1.08997 * 109.47622 * 180.02562 * 19 18 9 35 35 H 1.09005 * 109.47241 * 300.00226 * 19 18 9 36 36 H 1.09005 * 110.48169 * 335.78495 * 20 3 2 37 37 H 1.08992 * 110.48534 * 98.42463 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9976 -0.8239 5 6 1.7015 2.1212 1.3388 6 6 3.0449 2.5269 1.9794 7 6 4.0201 2.6343 0.7809 8 1 3.8966 3.5873 0.2664 9 7 5.4059 2.4563 1.2215 10 6 5.7562 1.3509 1.9497 11 1 5.0758 0.9526 2.6879 12 6 6.9858 0.7420 1.7392 13 7 7.5115 -0.0201 2.6747 14 14 7.8943 1.0044 0.1283 15 1 8.8814 2.1020 0.2897 16 1 8.6013 -0.2454 -0.2505 17 1 6.9224 1.3650 -0.9351 18 6 6.4170 3.4610 0.8829 19 6 6.3733 4.5946 1.9096 20 6 3.5774 1.4596 -0.1263 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 1.0887 3.0057 1.1647 27 1 1.1743 1.4228 1.9887 28 1 2.9522 3.4891 2.4831 29 1 3.3804 1.7617 2.6794 30 1 8.3710 -0.4452 2.5278 31 1 7.4047 3.0001 0.8925 32 1 6.2127 3.8619 -0.1099 33 1 6.5775 4.1937 2.9023 34 1 7.1252 5.3424 1.6575 35 1 5.3855 5.0556 1.9000 36 1 4.0000 0.5207 0.2319 37 1 3.8733 1.6426 -1.1592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308491474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = -3.791700 kcal Electronic energy + Delta-G solvation = -14975.232804 eV Core-core repulsion = 12752.181369 eV Total energy + Delta-G solvation = -2223.051435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.34593 -35.48805 -32.33206 -31.57119 -29.21133 -27.91724 -26.26635 -23.63170 -22.43702 -21.38255 -19.24581 -18.88772 -16.32618 -15.42123 -15.30570 -14.72492 -13.83081 -13.36550 -13.10555 -12.95058 -12.70442 -12.46399 -12.01416 -11.86525 -11.42542 -11.36794 -11.00009 -10.73730 -10.65476 -10.42140 -10.39871 -10.14939 -10.00755 -9.86455 -9.77984 -9.53099 -9.23970 -8.44595 -6.69904 -5.92902 -3.33102 3.35019 3.50492 3.56721 4.57953 4.94084 5.15260 5.18291 5.32812 5.47416 5.59296 5.66276 5.73536 5.97417 6.06246 6.09486 6.10994 6.19608 6.25481 6.31622 6.32853 6.39890 6.43672 6.52168 6.56252 6.63417 6.67000 6.75544 6.85728 7.02468 7.09226 7.14290 7.26238 8.14591 8.47110 9.09328 9.80006 10.22070 11.22830 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031351 B = 0.010659 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.902512 B = 2626.262863 C = 2996.685773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.058 0.942 5 C -0.116 4.116 6 C -0.133 4.133 7 C 0.175 3.825 8 H 0.055 0.945 9 N -0.600 5.600 10 C -0.256 4.256 11 H 0.081 0.919 12 C 0.033 3.967 13 N -0.904 5.904 14 Si 0.876 3.124 15 H -0.289 1.289 16 H -0.304 1.304 17 H -0.268 1.268 18 C 0.131 3.869 19 C -0.163 4.163 20 C -0.132 4.132 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 4.419 -5.127 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.173 4.173 7 C 0.067 3.933 8 H 0.073 0.927 9 N -0.321 5.321 10 C -0.384 4.384 11 H 0.098 0.902 12 C -0.167 4.167 13 N -0.546 5.546 14 Si 0.707 3.293 15 H -0.217 1.217 16 H -0.232 1.232 17 H -0.193 1.193 18 C 0.005 3.995 19 C -0.222 4.222 20 C -0.172 4.172 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.629 4.306 -5.076 11.705 hybrid contribution 0.653 0.058 -0.878 1.096 sum -8.976 4.364 -5.954 11.622 Atomic orbital electron populations 1.21810 0.96717 1.00845 1.01410 1.21619 0.94836 0.96972 1.01997 1.21715 0.96830 0.95195 0.97118 0.92303 1.22156 0.97771 0.99066 0.96368 1.22711 0.94236 1.00806 0.99511 1.21309 0.84684 0.95031 0.92263 0.92694 1.44181 1.03679 1.21370 1.62867 1.18686 1.02575 1.03853 1.13334 0.90156 1.25473 0.97761 0.96479 0.96974 1.69865 1.17907 1.34775 1.32049 0.86925 0.79475 0.75684 0.87224 1.21678 1.23220 1.19324 1.21145 0.93643 0.89879 0.94816 1.22271 0.99564 0.98478 1.01924 1.22861 0.92855 1.02356 0.99090 0.93393 0.92760 0.93304 0.92515 0.91668 0.93144 0.92426 0.93295 0.90456 0.92881 0.92634 0.94959 0.92313 0.94457 0.93903 0.89998 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.74 37.16 0.36 -1.42 16 2 C -0.12 -1.67 5.06 -26.73 -0.14 -1.81 16 3 C -0.09 -1.39 2.93 -89.50 -0.26 -1.65 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.12 -1.77 5.96 -25.61 -0.15 -1.92 16 6 C -0.13 -2.46 6.34 -25.07 -0.16 -2.62 16 7 C 0.17 3.49 3.43 -65.94 -0.23 3.26 16 8 H 0.05 1.02 7.97 -51.93 -0.41 0.61 16 9 N -0.60 -14.13 2.15 -163.40 -0.35 -14.48 16 10 C -0.26 -7.00 8.50 -15.06 -0.13 -7.13 16 11 H 0.08 2.37 6.55 -52.49 -0.34 2.03 16 12 C 0.03 0.94 5.28 -17.43 -0.09 0.85 16 13 N -0.90 -27.61 13.97 55.49 0.78 -26.84 16 14 Si 0.88 22.46 24.97 -169.99 -4.24 18.22 16 15 H -0.29 -7.25 6.69 56.52 0.38 -6.87 16 16 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 18 C 0.13 2.88 4.96 -4.04 -0.02 2.86 16 19 C -0.16 -3.15 10.23 37.16 0.38 -2.77 16 20 C -0.13 -2.52 5.92 -25.07 -0.15 -2.66 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.63 7.00 -51.93 -0.36 0.26 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.85 6.87 -51.93 -0.36 0.49 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.63 6.27 -51.93 -0.33 1.31 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.06 1.35 3.50 -51.93 -0.18 1.16 16 32 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.79 7.01 -51.93 -0.36 1.43 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -28.98 281.49 -6.74 -35.72 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.58 Total: -1.86 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.58 Total: -15.00 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.42 Total: -41.32 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.24 Total: 18.22 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.98 -6.74 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.927 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds