Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47082 * 2 1 4 4 H 1.08994 * 110.05578 * 306.41784 * 3 2 1 5 5 C 1.53874 * 110.02978 * 67.83566 * 3 2 1 6 6 C 1.54266 * 106.60013 * 119.28234 * 5 3 2 7 7 C 1.54890 * 104.19548 * 23.61084 * 6 5 3 8 8 H 1.09004 * 110.76035 * 80.36929 * 7 6 5 9 9 N 1.46496 * 110.75593 * 203.74253 * 7 6 5 10 10 C 1.36934 * 120.00098 * 53.33027 * 9 7 6 11 11 H 1.07997 * 120.00170 * 322.56652 * 10 9 7 12 12 C 1.38817 * 120.00169 * 142.56701 * 10 9 7 13 13 N 1.31618 * 119.99690 * 158.45586 * 12 10 9 14 14 Si 1.86801 * 119.99989 * 338.46283 * 12 10 9 15 15 H 1.48493 * 109.47286 * 95.72374 * 14 12 10 16 16 H 1.48502 * 109.46798 * 215.72395 * 14 12 10 17 17 H 1.48506 * 109.46929 * 335.72020 * 14 12 10 18 18 C 1.46501 * 120.00089 * 233.32203 * 9 7 6 19 19 C 1.53002 * 109.46890 * 84.24541 * 18 9 7 20 20 C 1.54270 * 110.03402 * 185.00065 * 3 2 1 21 21 H 1.08999 * 109.46691 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46718 * 299.99661 * 1 2 3 23 23 H 1.08998 * 109.46868 * 59.99886 * 1 2 3 24 24 H 1.09005 * 109.47201 * 240.00422 * 2 1 3 25 25 H 1.09000 * 109.47384 * 120.00091 * 2 1 3 26 26 H 1.08999 * 110.03141 * 238.56939 * 5 3 2 27 27 H 1.08997 * 110.03439 * 0.02562 * 5 3 2 28 28 H 1.08999 * 110.48642 * 142.28624 * 6 5 3 29 29 H 1.08999 * 110.48930 * 264.80004 * 6 5 3 30 30 H 0.97008 * 119.99860 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47709 * 204.24346 * 18 9 7 32 32 H 1.09002 * 109.47367 * 324.24798 * 18 9 7 33 33 H 1.08992 * 109.46934 * 60.00002 * 19 18 9 34 34 H 1.08997 * 109.47622 * 180.02562 * 19 18 9 35 35 H 1.09005 * 109.47241 * 300.00226 * 19 18 9 36 36 H 1.09005 * 110.48169 * 335.78495 * 20 3 2 37 37 H 1.08992 * 110.48534 * 98.42463 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9976 -0.8239 5 6 1.7015 2.1212 1.3388 6 6 3.0449 2.5269 1.9794 7 6 4.0201 2.6343 0.7809 8 1 3.8966 3.5873 0.2664 9 7 5.4059 2.4563 1.2215 10 6 5.7562 1.3509 1.9497 11 1 5.0758 0.9526 2.6879 12 6 6.9858 0.7420 1.7392 13 7 7.5115 -0.0201 2.6747 14 14 7.8943 1.0044 0.1283 15 1 8.8814 2.1020 0.2897 16 1 8.6013 -0.2454 -0.2505 17 1 6.9224 1.3650 -0.9351 18 6 6.4170 3.4610 0.8829 19 6 6.3733 4.5946 1.9096 20 6 3.5774 1.4596 -0.1263 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 1.0887 3.0057 1.1647 27 1 1.1743 1.4228 1.9887 28 1 2.9522 3.4891 2.4831 29 1 3.3804 1.7617 2.6794 30 1 8.3710 -0.4452 2.5278 31 1 7.4047 3.0001 0.8925 32 1 6.2127 3.8619 -0.1099 33 1 6.5775 4.1937 2.9023 34 1 7.1252 5.3424 1.6575 35 1 5.3855 5.0556 1.9000 36 1 4.0000 0.5207 0.2319 37 1 3.8733 1.6426 -1.1592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308491474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = -20.045860 kcal Electronic energy + Delta-G solvation = -14975.937637 eV Core-core repulsion = 12752.181369 eV Total energy + Delta-G solvation = -2223.756268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.84017 -37.14908 -33.95366 -33.36816 -30.86009 -29.34328 -27.83945 -25.49734 -23.69559 -23.01803 -20.98887 -20.19814 -18.27927 -17.23140 -16.89484 -16.32074 -15.20639 -14.98049 -14.87112 -14.43232 -14.17751 -13.89022 -13.69778 -13.57276 -13.07045 -12.61017 -12.48783 -12.41101 -12.18006 -12.11555 -12.05138 -11.68560 -11.52601 -11.34435 -11.23191 -11.10794 -10.95741 -10.57702 -8.64588 -8.14500 -5.50329 1.29299 1.40313 1.51479 2.44676 3.09553 3.33960 3.89343 3.93641 4.12590 4.29392 4.41133 4.44437 4.57037 4.61322 4.70898 4.73540 4.86018 4.88507 4.92483 4.98962 5.00903 5.09305 5.16065 5.19773 5.22926 5.31282 5.40112 5.46547 5.48552 5.60293 5.63021 5.75702 6.03276 6.26414 7.08300 7.73255 8.14104 9.05696 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031351 B = 0.010659 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.902512 B = 2626.262863 C = 2996.685773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.085 0.915 5 C -0.107 4.107 6 C -0.130 4.130 7 C 0.165 3.835 8 H 0.082 0.918 9 N -0.612 5.612 10 C -0.231 4.231 11 H 0.044 0.956 12 C -0.027 4.027 13 N -0.955 5.955 14 Si 0.939 3.061 15 H -0.278 1.278 16 H -0.314 1.314 17 H -0.258 1.258 18 C 0.120 3.880 19 C -0.152 4.152 20 C -0.131 4.131 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.259 0.741 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.491 6.475 -7.085 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.103 0.897 5 C -0.145 4.145 6 C -0.169 4.169 7 C 0.059 3.941 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.361 4.361 11 H 0.062 0.938 12 C -0.222 4.222 13 N -0.601 5.601 14 Si 0.769 3.231 15 H -0.206 1.206 16 H -0.243 1.243 17 H -0.182 1.182 18 C -0.005 4.005 19 C -0.212 4.212 20 C -0.171 4.171 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.373 6.400 -7.057 14.835 hybrid contribution 1.116 -0.541 -0.221 1.259 sum -10.257 5.859 -7.278 13.874 Atomic orbital electron populations 1.21755 0.94247 1.01807 1.02340 1.21599 0.96960 0.96105 1.00857 1.21696 0.94060 0.96218 0.98095 0.89692 1.22120 0.96130 1.00317 0.95889 1.22609 0.95766 1.00076 0.98475 1.21607 0.82797 0.96537 0.93189 0.90032 1.44337 1.05552 1.20705 1.62777 1.18509 1.01296 1.04261 1.12001 0.93840 1.26042 0.99211 0.97220 0.99696 1.69993 1.18720 1.37357 1.33989 0.85904 0.78547 0.75231 0.83453 1.20579 1.24338 1.18241 1.21299 0.92006 0.90095 0.97057 1.22132 1.01595 0.98079 0.99377 1.22792 0.95636 0.99872 0.98789 0.92572 0.92321 0.91779 0.92636 0.94039 0.90201 0.92078 0.92275 0.94451 0.93191 0.94976 0.92206 0.95084 0.91523 0.92159 0.93988 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.74 71.98 0.70 -2.29 16 2 C -0.12 -3.20 5.06 30.60 0.15 -3.05 16 3 C -0.08 -2.32 2.93 -10.07 -0.03 -2.35 16 4 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 5 C -0.11 -2.98 5.96 31.32 0.19 -2.79 16 6 C -0.13 -4.66 6.34 31.67 0.20 -4.46 16 7 C 0.16 6.30 3.43 46.28 0.16 6.45 16 8 H 0.08 2.72 7.97 -2.39 -0.02 2.70 16 9 N -0.61 -28.48 2.15 -670.88 -1.44 -29.92 16 10 C -0.23 -13.01 8.50 84.03 0.71 -12.30 16 11 H 0.04 2.75 6.55 -2.91 -0.02 2.73 16 12 C -0.03 -1.57 5.28 84.86 0.45 -1.12 16 13 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 14 Si 0.94 47.29 24.97 68.60 1.71 49.00 16 15 H -0.28 -13.41 6.69 99.48 0.67 -12.75 16 16 H -0.31 -16.19 7.11 99.48 0.71 -15.49 16 17 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 18 C 0.12 5.05 4.96 86.38 0.43 5.48 16 19 C -0.15 -5.53 10.23 71.98 0.74 -4.79 16 20 C -0.13 -4.85 5.92 31.67 0.19 -4.66 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.17 7.00 -2.39 -0.02 1.15 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.68 6.87 -2.39 -0.02 1.66 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.62 6.27 -2.39 -0.01 1.61 16 30 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 31 H 0.03 1.51 3.50 -2.39 -0.01 1.50 16 32 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.04 1.87 7.01 -2.38 -0.02 1.85 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.62 281.49 5.43 -59.19 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.96 Total: 8.14 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.89 Total: -25.88 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -1.14 Total: -90.46 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.71 Total: 49.00 kcal Total: -64.62 5.43 -59.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.148 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds