Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 H 1.09000 * 109.46980 * 304.10241 * 3 2 1 5 5 C 1.50703 * 109.47080 * 184.10758 * 3 2 1 6 6 H 1.08004 * 119.99919 * 239.99850 * 5 3 2 7 7 C 1.37874 * 119.99876 * 59.99641 * 5 3 2 8 8 N 1.31515 * 120.00531 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47325 * 59.99989 * 9 7 5 11 11 H 1.48499 * 109.47083 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47169 * 300.00153 * 9 7 5 13 13 N 1.46901 * 109.47176 * 64.10513 * 3 2 1 14 14 C 1.46900 * 110.99977 * 212.05363 * 13 3 2 15 15 H 1.08998 * 109.46988 * 32.57174 * 14 13 3 16 16 C 1.52998 * 109.47161 * 272.56938 * 14 13 3 17 17 C 1.52998 * 109.47104 * 152.56740 * 14 13 3 18 18 H 1.08998 * 115.55005 * 80.27884 * 17 14 13 19 19 C 1.53010 * 117.49745 * 294.61263 * 17 14 13 20 20 C 1.52994 * 117.51943 * 225.98293 * 17 14 13 21 21 H 1.09004 * 117.49985 * 214.96927 * 20 17 14 22 22 C 1.53003 * 117.49755 * 359.97438 * 20 17 14 23 23 H 1.08999 * 109.46839 * 184.57701 * 1 2 3 24 24 H 1.09002 * 109.47473 * 304.57532 * 1 2 3 25 25 H 1.08996 * 109.47137 * 64.57292 * 1 2 3 26 26 H 1.09002 * 109.47397 * 239.99856 * 2 1 3 27 27 H 1.09004 * 109.47464 * 119.99590 * 2 1 3 28 28 H 0.96994 * 120.00186 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99486 * 88.10445 * 13 3 2 30 30 H 1.09000 * 109.46736 * 177.80016 * 16 14 13 31 31 H 1.09000 * 109.46834 * 297.79853 * 16 14 13 32 32 H 1.08998 * 109.47382 * 57.79803 * 16 14 13 33 33 H 1.08998 * 117.49682 * 359.97438 * 19 17 14 34 34 H 1.08996 * 117.49762 * 144.97419 * 19 17 14 35 35 H 1.08993 * 109.47547 * 64.78013 * 22 20 17 36 36 H 1.09003 * 109.47021 * 184.78166 * 22 20 17 37 37 H 1.08999 * 109.47017 * 304.77327 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6178 1.9771 -0.8509 5 6 3.5435 1.4438 -0.1018 6 1 4.1374 1.8925 0.6809 7 6 4.1610 0.8721 -1.1940 8 7 3.4379 0.3262 -2.1472 9 14 6.0248 0.8731 -1.3197 10 1 6.5995 0.1443 -0.1605 11 1 6.4362 0.2032 -2.5796 12 1 6.5203 2.2731 -1.3194 13 7 1.6329 2.1058 1.2459 14 6 1.3945 3.5386 1.0260 15 1 1.0084 3.6922 0.0184 16 6 2.7081 4.3054 1.1912 17 6 0.3746 4.0484 2.0461 18 1 0.7704 4.2666 3.0379 19 6 -1.0487 3.4934 1.9600 20 6 -0.7614 4.9329 1.5285 21 1 -1.1129 5.7332 2.1798 22 6 -0.7904 5.2407 0.0301 23 1 -0.3633 -1.0244 0.0820 24 1 -0.3634 0.5832 0.8462 25 1 -0.3633 0.4412 -0.9281 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8724 -0.0756 -2.9157 29 1 2.3172 1.9606 1.9731 30 1 2.5391 5.3632 0.9898 31 1 3.0741 4.1837 2.2107 32 1 3.4469 3.9157 0.4910 33 1 -1.2584 2.7654 1.1763 34 1 -1.5890 3.3462 2.8951 35 1 -0.9572 4.3190 -0.5271 36 1 -1.5963 5.9437 -0.1809 37 1 0.1616 5.6791 -0.2692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322139314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = 2.325709 kcal Electronic energy + Delta-G solvation = -14842.351091 eV Core-core repulsion = 12619.564927 eV Total energy + Delta-G solvation = -2222.786164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.28736 -35.68912 -32.67951 -31.32689 -28.41239 -28.09204 -25.98097 -22.93571 -22.44945 -20.79397 -19.50857 -18.63558 -16.46107 -15.52350 -14.76390 -14.19863 -13.95008 -13.35540 -12.92346 -12.62662 -12.26795 -12.15130 -11.92900 -11.77778 -11.30134 -11.09677 -11.07218 -11.03228 -10.75736 -10.65746 -10.23004 -10.03956 -9.61631 -9.56226 -9.45666 -9.11524 -8.92841 -8.34606 -7.15368 -5.96908 -4.08806 3.28743 3.34211 3.36514 4.18588 4.41156 5.07751 5.15669 5.28197 5.35331 5.56385 5.79515 5.85387 5.96849 6.05717 6.17415 6.22575 6.23595 6.32568 6.42026 6.47477 6.56740 6.63066 6.66696 6.78496 6.81007 7.03521 7.19728 7.24126 7.52526 7.64428 7.82038 8.15178 8.21457 8.41983 8.75080 9.05780 9.58020 11.03264 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033397 B = 0.009454 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.202488 B = 2961.134150 C = 3388.961325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.028 0.972 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.118 3.882 15 H 0.073 0.927 16 C -0.176 4.176 17 C -0.129 4.129 18 H 0.090 0.910 19 C -0.159 4.159 20 C -0.165 4.165 21 H 0.093 0.907 22 C -0.121 4.121 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.033 0.967 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 6.263 5.124 9.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.046 0.954 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.310 5.310 14 C 0.008 3.992 15 H 0.091 0.909 16 C -0.235 4.235 17 C -0.148 4.148 18 H 0.108 0.892 19 C -0.196 4.196 20 C -0.184 4.184 21 H 0.111 0.889 22 C -0.178 4.178 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.403 5.974 4.853 10.012 hybrid contribution 2.058 0.306 -0.153 2.086 sum -4.344 6.281 4.701 8.968 Atomic orbital electron populations 1.21728 0.99205 0.98410 1.00275 1.21494 0.91956 0.99443 1.01482 1.19164 0.92657 0.91114 0.86139 0.95448 1.21861 0.92660 1.37658 1.05741 0.92696 1.24936 0.97765 0.95105 0.95786 1.69869 1.34885 1.38074 1.09557 0.86756 0.86341 0.78133 0.77325 1.20336 1.21307 1.20455 1.60826 1.50589 1.08523 1.11026 1.20996 0.92372 0.89075 0.96796 0.90886 1.22514 0.99768 0.99539 1.01648 1.22410 0.90286 1.02298 0.99803 0.89164 1.22894 0.99021 0.95220 1.02453 1.22335 1.04911 0.94191 0.96948 0.88888 1.21331 1.01210 1.01445 0.93781 0.95804 0.92932 0.94799 0.89410 0.95165 0.92908 0.85557 0.94052 0.93731 0.90626 0.88475 0.90047 0.92243 0.93009 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.85 37.16 0.37 -2.52 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.28 2.01 -68.86 -0.14 5.14 16 4 H 0.03 0.75 7.27 -51.93 -0.38 0.37 16 5 C -0.54 -14.23 7.24 -34.44 -0.25 -14.48 16 6 H 0.05 1.43 7.07 -52.48 -0.37 1.06 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.89 -24.90 11.30 55.43 0.63 -24.27 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -14.04 5.37 -100.95 -0.54 -14.58 16 14 C 0.12 2.18 2.51 -67.71 -0.17 2.01 16 15 H 0.07 1.46 5.29 -51.93 -0.27 1.18 16 16 C -0.18 -3.15 8.98 37.16 0.33 -2.81 16 17 C -0.13 -2.02 5.31 -90.62 -0.48 -2.51 16 18 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 19 C -0.16 -2.36 9.86 -26.72 -0.26 -2.63 16 20 C -0.17 -2.29 6.41 -90.62 -0.58 -2.87 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 C -0.12 -1.65 8.70 37.16 0.32 -1.32 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.05 7.53 -51.93 -0.39 0.66 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.83 7.96 -39.29 -0.31 6.52 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.56 6.35 -51.93 -0.33 1.23 16 33 H 0.10 1.60 7.96 -51.93 -0.41 1.18 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.88 7.54 -51.93 -0.39 0.49 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.81 7.86 -51.93 -0.41 0.41 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -26.46 291.52 -8.16 -34.62 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.52 Total: 6.77 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.10 Total: -22.95 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.08 Total: -38.86 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.46 -8.16 -34.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322139314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.947 kcal (2) G-P(sol) polarization free energy of solvation -26.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds