Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09004 * 109.47405 * 54.99828 * 3 2 1 5 5 C 1.53002 * 109.47037 * 294.99788 * 3 2 1 6 6 C 1.53004 * 109.47205 * 174.99809 * 3 2 1 7 7 N 1.46897 * 109.47087 * 294.66348 * 6 3 2 8 8 C 1.48568 * 110.99648 * 284.45820 * 7 6 3 9 9 C 1.54376 * 104.59100 * 200.96137 * 8 7 6 10 10 C 1.54259 * 105.06404 * 23.85291 * 9 8 7 11 11 H 1.08999 * 110.32433 * 240.99916 * 10 9 8 12 12 C 1.50699 * 110.32297 * 118.89513 * 10 9 8 13 13 H 1.08002 * 120.00340 * 241.45390 * 12 10 9 14 14 C 1.37880 * 120.00108 * 61.17985 * 12 10 9 15 15 N 1.31510 * 119.99960 * 0.27373 * 14 12 10 16 16 Si 1.86801 * 120.00039 * 180.27703 * 14 12 10 17 17 H 1.48501 * 109.47150 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47153 * 120.00075 * 16 14 12 19 19 H 1.48503 * 109.46899 * 240.00046 * 16 14 12 20 20 C 1.48560 * 110.99985 * 169.04252 * 7 6 3 21 21 H 1.09006 * 109.46930 * 60.00042 * 1 2 3 22 22 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47106 * 300.00208 * 1 2 3 24 24 H 1.08999 * 109.47223 * 239.99403 * 2 1 3 25 25 H 1.09000 * 109.46652 * 120.00258 * 2 1 3 26 26 H 1.08996 * 109.47271 * 305.73371 * 5 3 2 27 27 H 1.08994 * 109.47284 * 65.73892 * 5 3 2 28 28 H 1.09009 * 109.46804 * 185.73474 * 5 3 2 29 29 H 1.08998 * 109.47017 * 174.65931 * 6 3 2 30 30 H 1.09003 * 109.46653 * 54.66303 * 6 3 2 31 31 H 1.08993 * 110.40807 * 82.18517 * 8 7 6 32 32 H 1.09001 * 110.41333 * 319.73903 * 8 7 6 33 33 H 1.09003 * 110.32327 * 264.95632 * 9 8 7 34 34 H 1.08999 * 110.32434 * 142.75188 * 9 8 7 35 35 H 0.96999 * 120.00468 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.41083 * 40.26072 * 20 7 6 37 37 H 1.08991 * 110.41079 * 277.81446 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 7 3.9487 0.9037 1.4366 8 6 3.7091 1.8987 2.5136 9 6 4.6181 1.4415 3.6747 10 6 5.7370 0.6161 3.0067 11 1 5.7258 -0.4082 3.3793 12 6 7.0797 1.2506 3.2632 13 1 7.6791 1.5994 2.4352 14 6 7.5404 1.3911 4.5551 15 7 6.8105 0.9664 5.5633 16 14 9.2012 2.1846 4.8734 17 1 9.8201 2.5731 3.5806 18 1 9.0191 3.3922 5.7182 19 1 10.0851 1.2188 5.5743 20 6 5.4101 0.6440 1.4982 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.9837 1.5316 -2.1517 27 1 0.5499 2.2164 -1.3495 28 1 2.0842 3.1188 -1.3523 29 1 3.9361 2.4646 0.0306 30 1 3.9951 0.8261 -0.6623 31 1 2.6634 1.8824 2.8204 32 1 3.9927 2.8966 2.1792 33 1 4.0564 0.8219 4.3737 34 1 5.0399 2.3056 4.1880 35 1 7.1347 1.0648 6.4722 36 1 5.9598 1.4456 1.0049 37 1 5.6451 -0.3169 1.0406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397604601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -23.902456 kcal Electronic energy + Delta-G solvation = -14504.982592 eV Core-core repulsion = 12281.059089 eV Total energy + Delta-G solvation = -2223.923503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.36888 -35.97484 -32.91744 -30.68292 -29.16098 -28.08261 -25.69627 -24.00752 -22.75967 -20.48857 -19.65186 -18.92685 -16.25289 -15.21644 -14.99037 -14.74820 -14.33035 -13.66889 -13.56882 -13.05256 -12.56780 -12.28860 -12.03367 -11.72488 -11.53645 -11.36628 -11.04057 -10.96571 -10.62608 -10.57058 -10.35780 -10.24280 -10.12271 -10.06465 -9.68007 -9.20019 -8.68884 -8.36031 -7.71241 -5.99608 -4.03337 3.29881 3.38037 3.41727 4.43464 4.72623 4.96734 5.15306 5.29180 5.33679 5.54767 5.65738 5.68219 5.76525 5.87189 5.93685 6.01874 6.06218 6.13574 6.22045 6.26190 6.32486 6.36601 6.49293 6.58677 6.63116 6.71656 6.93540 7.18729 7.24746 7.62127 7.72732 7.82615 7.93854 8.03615 8.49862 9.00095 9.60615 11.09643 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063461 B = 0.006458 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.111553 B = 4334.465452 C = 4498.472713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.085 4.085 4 H 0.067 0.933 5 C -0.147 4.147 6 C 0.048 3.952 7 N -0.514 5.514 8 C 0.032 3.968 9 C -0.091 4.091 10 C 0.047 3.953 11 H 0.032 0.968 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.887 5.887 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.040 3.960 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.259 0.741 36 H 0.033 0.967 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 1.054 -9.673 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.104 4.104 4 H 0.086 0.914 5 C -0.204 4.204 6 C -0.081 4.081 7 N -0.237 5.237 8 C -0.096 4.096 9 C -0.130 4.130 10 C 0.028 3.972 11 H 0.050 0.950 12 C -0.553 4.553 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.087 4.087 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.638 0.551 -9.413 13.483 hybrid contribution 1.382 1.265 0.106 1.877 sum -8.256 1.816 -9.306 12.572 Atomic orbital electron populations 1.21829 0.96894 1.00965 1.01222 1.21469 0.94494 0.96316 1.02673 1.21103 0.95332 0.96592 0.97387 0.91423 1.21860 1.00880 1.00129 0.97564 1.22282 0.95053 0.97657 0.93060 1.65330 1.17433 1.38667 1.02303 1.23199 0.99429 0.93029 0.93898 1.22184 0.95570 1.00455 0.94765 1.19367 0.93581 0.96444 0.87766 0.94955 1.21256 1.02506 1.39454 0.92133 0.92740 1.24968 0.97095 0.95586 0.96323 1.69998 1.37209 1.46627 0.98716 0.86593 0.84415 0.79116 0.78215 1.19855 1.21081 1.21013 1.23262 0.85874 0.98792 1.00769 0.93228 0.93293 0.93054 0.92855 0.90311 0.92942 0.92741 0.93145 0.95301 0.91754 0.92265 0.95264 0.93727 0.91639 0.93111 0.94901 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C -0.11 -1.47 5.35 -26.73 -0.14 -1.61 16 3 C -0.09 -1.15 2.45 -90.62 -0.22 -1.38 16 4 H 0.07 0.97 7.32 -51.93 -0.38 0.59 16 5 C -0.15 -1.64 8.80 37.16 0.33 -1.31 16 6 C 0.05 0.78 4.22 -3.82 -0.02 0.76 16 7 N -0.51 -9.91 4.72 -229.97 -1.09 -10.99 16 8 C 0.03 0.65 5.94 -2.18 -0.01 0.64 16 9 C -0.09 -2.19 5.75 -25.35 -0.15 -2.33 16 10 C 0.05 1.21 2.99 -90.39 -0.27 0.94 16 11 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.51 -14.26 8.38 -34.44 -0.29 -14.55 16 13 H 0.05 1.50 7.58 -52.49 -0.40 1.10 16 14 C 0.06 1.73 5.08 -17.82 -0.09 1.64 16 15 N -0.89 -25.70 12.34 55.43 0.68 -25.01 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.04 0.87 5.98 -2.18 -0.01 0.86 16 21 H 0.05 0.50 6.70 -51.93 -0.35 0.15 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.21 7.63 -51.93 -0.40 0.81 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.55 6.85 -51.93 -0.36 0.19 16 28 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.03 0.47 7.74 -51.93 -0.40 0.07 16 30 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 31 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 32 H 0.03 0.58 7.74 -51.93 -0.40 0.18 16 33 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.71 7.22 -51.93 -0.38 1.34 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.03 0.72 7.56 -51.93 -0.39 0.33 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -27.98 288.13 -8.38 -36.36 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.79 Total: -3.36 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.52 Total: -17.68 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.40 Total: -36.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.98 -8.38 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397604601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.460 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds