Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09004 * 109.47405 * 54.99828 * 3 2 1 5 5 C 1.53002 * 109.47037 * 294.99788 * 3 2 1 6 6 C 1.53004 * 109.47205 * 174.99809 * 3 2 1 7 7 N 1.46897 * 109.47087 * 294.66348 * 6 3 2 8 8 C 1.48568 * 110.99648 * 284.45820 * 7 6 3 9 9 C 1.54376 * 104.59100 * 200.96137 * 8 7 6 10 10 C 1.54259 * 105.06404 * 23.85291 * 9 8 7 11 11 H 1.08999 * 110.32433 * 240.99916 * 10 9 8 12 12 C 1.50699 * 110.32297 * 118.89513 * 10 9 8 13 13 H 1.08002 * 120.00340 * 241.45390 * 12 10 9 14 14 C 1.37880 * 120.00108 * 61.17985 * 12 10 9 15 15 N 1.31510 * 119.99960 * 0.27373 * 14 12 10 16 16 Si 1.86801 * 120.00039 * 180.27703 * 14 12 10 17 17 H 1.48501 * 109.47150 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47153 * 120.00075 * 16 14 12 19 19 H 1.48503 * 109.46899 * 240.00046 * 16 14 12 20 20 C 1.48560 * 110.99985 * 169.04252 * 7 6 3 21 21 H 1.09006 * 109.46930 * 60.00042 * 1 2 3 22 22 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47106 * 300.00208 * 1 2 3 24 24 H 1.08999 * 109.47223 * 239.99403 * 2 1 3 25 25 H 1.09000 * 109.46652 * 120.00258 * 2 1 3 26 26 H 1.08996 * 109.47271 * 305.73371 * 5 3 2 27 27 H 1.08994 * 109.47284 * 65.73892 * 5 3 2 28 28 H 1.09009 * 109.46804 * 185.73474 * 5 3 2 29 29 H 1.08998 * 109.47017 * 174.65931 * 6 3 2 30 30 H 1.09003 * 109.46653 * 54.66303 * 6 3 2 31 31 H 1.08993 * 110.40807 * 82.18517 * 8 7 6 32 32 H 1.09001 * 110.41333 * 319.73903 * 8 7 6 33 33 H 1.09003 * 110.32327 * 264.95632 * 9 8 7 34 34 H 1.08999 * 110.32434 * 142.75188 * 9 8 7 35 35 H 0.96999 * 120.00468 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.41083 * 40.26072 * 20 7 6 37 37 H 1.08991 * 110.41079 * 277.81446 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 7 3.9487 0.9037 1.4366 8 6 3.7091 1.8987 2.5136 9 6 4.6181 1.4415 3.6747 10 6 5.7370 0.6161 3.0067 11 1 5.7258 -0.4082 3.3793 12 6 7.0797 1.2506 3.2632 13 1 7.6791 1.5994 2.4352 14 6 7.5404 1.3911 4.5551 15 7 6.8105 0.9664 5.5633 16 14 9.2012 2.1846 4.8734 17 1 9.8201 2.5731 3.5806 18 1 9.0191 3.3922 5.7182 19 1 10.0851 1.2188 5.5743 20 6 5.4101 0.6440 1.4982 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.9837 1.5316 -2.1517 27 1 0.5499 2.2164 -1.3495 28 1 2.0842 3.1188 -1.3523 29 1 3.9361 2.4646 0.0306 30 1 3.9951 0.8261 -0.6623 31 1 2.6634 1.8824 2.8204 32 1 3.9927 2.8966 2.1792 33 1 4.0564 0.8219 4.3737 34 1 5.0399 2.3056 4.1880 35 1 7.1347 1.0648 6.4722 36 1 5.9598 1.4456 1.0049 37 1 5.6451 -0.3169 1.0406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397604601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -39.807369 kcal Electronic energy + Delta-G solvation = -14505.672281 eV Core-core repulsion = 12281.059089 eV Total energy + Delta-G solvation = -2224.613192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94386 -37.28397 -34.85949 -32.25248 -30.38659 -29.91125 -27.20207 -25.70612 -23.98853 -22.03194 -21.38625 -20.36315 -18.32002 -16.83356 -16.65043 -16.24307 -15.77042 -15.02641 -14.87465 -14.52702 -14.16631 -13.76039 -13.25025 -13.12267 -12.98647 -12.79549 -12.60905 -12.53494 -12.44664 -12.16995 -11.92500 -11.69446 -11.45887 -11.37534 -11.25825 -11.03120 -10.78257 -10.49337 -9.28921 -8.14179 -6.25462 1.39437 1.41004 1.52572 2.41656 3.16617 3.23542 3.86115 4.08409 4.12788 4.26975 4.34887 4.49924 4.58453 4.63643 4.68869 4.74531 4.80498 4.84840 4.88483 4.95612 5.06035 5.19973 5.20768 5.25071 5.32073 5.32323 5.39939 5.58216 5.60824 5.68142 5.78185 5.87911 5.98791 6.32290 6.41142 6.85839 7.42486 8.95145 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063461 B = 0.006458 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.111553 B = 4334.465452 C = 4498.472713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.081 4.081 4 H 0.060 0.940 5 C -0.141 4.141 6 C 0.047 3.953 7 N -0.514 5.514 8 C 0.045 3.955 9 C -0.084 4.084 10 C 0.038 3.962 11 H -0.003 1.003 12 C -0.533 4.533 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.052 3.948 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.030 0.970 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 1.827 -11.226 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.199 4.199 6 C -0.081 4.081 7 N -0.237 5.237 8 C -0.083 4.083 9 C -0.122 4.122 10 C 0.019 3.981 11 H 0.015 0.985 12 C -0.571 4.571 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.782 3.218 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.076 4.076 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.205 1.324 -10.983 15.051 hybrid contribution 1.541 0.983 0.590 1.920 sum -8.664 2.307 -10.393 13.726 Atomic orbital electron populations 1.21788 0.95208 1.01654 1.01830 1.21428 0.95992 0.95748 1.01645 1.21079 0.93176 0.97098 0.98632 0.92194 1.21811 1.01905 1.00000 0.96144 1.22413 0.97049 0.97515 0.91123 1.65335 1.15488 1.38960 1.03948 1.23054 0.99519 0.93168 0.92540 1.21972 0.95694 0.98826 0.95747 1.19348 0.93673 0.94427 0.90657 0.98468 1.21565 1.03510 1.39680 0.92395 0.92868 1.25769 1.00751 0.96045 0.96082 1.70120 1.38964 1.47572 0.99083 0.85537 0.79887 0.78180 0.78245 1.19073 1.20542 1.20553 1.23030 0.87550 0.99170 0.97831 0.91657 0.92657 0.93365 0.92265 0.92975 0.92141 0.91237 0.92918 0.95311 0.90918 0.90221 0.94801 0.95240 0.94335 0.92993 0.95142 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.67 71.98 0.70 -2.21 16 2 C -0.11 -2.68 5.35 30.59 0.16 -2.51 16 3 C -0.08 -2.00 2.45 -10.79 -0.03 -2.03 16 4 H 0.06 1.58 7.32 -2.38 -0.02 1.57 16 5 C -0.14 -2.69 8.80 71.98 0.63 -2.06 16 6 C 0.05 1.42 4.22 86.31 0.36 1.79 16 7 N -0.51 -19.38 4.72 -881.50 -4.16 -23.54 16 8 C 0.05 1.78 5.94 86.45 0.51 2.29 16 9 C -0.08 -4.12 5.75 31.49 0.18 -3.94 16 10 C 0.04 1.99 2.99 -10.65 -0.03 1.96 16 11 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 12 C -0.53 -30.02 8.38 25.60 0.21 -29.80 16 13 H 0.05 2.94 7.58 -2.91 -0.02 2.91 16 14 C 0.01 0.70 5.08 84.66 0.43 1.13 16 15 N -0.92 -54.38 12.34 21.45 0.26 -54.11 16 16 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C 0.05 2.25 5.98 86.45 0.52 2.76 16 21 H 0.06 1.09 6.70 -2.38 -0.02 1.07 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.54 7.63 -2.39 -0.02 1.52 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.14 6.85 -2.39 -0.02 1.12 16 28 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.03 0.88 7.74 -2.39 -0.02 0.86 16 30 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 31 H 0.08 2.84 7.75 -2.39 -0.02 2.82 16 32 H 0.03 1.31 7.74 -2.39 -0.02 1.29 16 33 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 2.07 7.22 -2.39 -0.02 2.05 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.03 1.32 7.56 -2.39 -0.02 1.30 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -60.20 288.13 2.78 -57.42 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.99 Total: 6.76 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.66 Total: -32.61 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.89 Total: -77.65 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.20 2.78 -57.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397604601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.608 kcal (2) G-P(sol) polarization free energy of solvation -60.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds