Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47566 * 2 1 4 4 C 1.52998 * 109.47375 * 239.99676 * 2 1 3 5 5 C 1.53001 * 109.47107 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47256 * 59.99956 * 5 4 2 7 7 C 1.52998 * 109.47099 * 300.00049 * 6 5 4 8 8 H 1.09006 * 109.46735 * 299.99897 * 7 6 5 9 9 C 1.52992 * 109.47273 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47107 * 59.99860 * 7 6 5 11 11 N 1.46895 * 109.47222 * 60.00149 * 10 7 6 12 12 C 1.46892 * 110.99902 * 114.29464 * 11 10 7 13 13 C 1.50704 * 109.47099 * 174.92929 * 12 11 10 14 14 H 1.08004 * 119.99937 * 0.27684 * 13 12 11 15 15 C 1.37880 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00146 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99582 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47348 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46968 * 120.00128 * 17 15 13 20 20 H 1.48503 * 109.46933 * 239.99413 * 17 15 13 21 21 H 1.08997 * 109.47291 * 294.87792 * 1 2 3 22 22 H 1.09005 * 109.46904 * 54.87844 * 1 2 3 23 23 H 1.08999 * 109.47191 * 174.87592 * 1 2 3 24 24 H 1.08994 * 109.47284 * 60.00135 * 4 2 1 25 25 H 1.09003 * 109.47144 * 299.99885 * 4 2 1 26 26 H 1.08997 * 109.47439 * 299.99548 * 5 4 2 27 27 H 1.09004 * 109.47035 * 180.02562 * 5 4 2 28 28 H 1.09006 * 109.46933 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46766 * 60.00214 * 6 5 4 30 30 H 1.09004 * 109.47420 * 294.19124 * 9 7 6 31 31 H 1.09008 * 109.47234 * 54.18954 * 9 7 6 32 32 H 1.08995 * 109.47423 * 174.18625 * 9 7 6 33 33 H 1.09003 * 109.46507 * 180.02562 * 10 7 6 34 34 H 1.00908 * 110.99590 * 350.34426 * 11 10 7 35 35 H 1.08997 * 109.47433 * 54.93233 * 12 11 10 36 36 H 1.08997 * 109.47765 * 294.92649 * 12 11 10 37 37 H 0.96998 * 119.99943 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0006 7 6 3.5695 -0.7221 1.2497 8 1 3.9332 0.3055 1.2498 9 6 4.0794 -1.4431 2.4990 10 6 2.0395 -0.7215 1.2493 11 7 1.5493 -2.1063 1.2491 12 6 0.8415 -2.4144 2.4988 13 6 0.2475 -3.7967 2.4121 14 1 0.3861 -4.3890 1.5197 15 6 -0.4686 -4.3072 3.4741 16 7 -0.6329 -3.5880 4.5628 17 14 -1.2043 -6.0209 3.3667 18 1 -0.8784 -6.6177 2.0466 19 1 -0.6408 -6.8699 4.4470 20 1 -2.6788 -5.9371 3.5213 21 1 -0.3634 0.4323 0.9323 22 1 -0.3633 0.5913 -0.8406 23 1 -0.3633 -1.0235 -0.0918 24 1 1.6768 -0.2076 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.9338 0.3057 -1.2487 27 1 3.9334 -1.2353 -2.1390 28 1 5.1696 -1.4441 0.0005 29 1 3.7158 -2.4709 0.0003 30 1 3.6337 -2.4365 2.5526 31 1 5.1645 -1.5341 2.4485 32 1 3.8036 -0.8727 3.3858 33 1 1.6762 -0.2072 2.1391 34 1 2.3042 -2.7570 1.0913 35 1 0.0456 -1.6861 2.6547 36 1 1.5416 -2.3715 3.3331 37 1 -1.1363 -3.9474 5.3100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -33.124986 kcal Electronic energy + Delta-G solvation = -14974.782644 eV Core-core repulsion = 12750.459222 eV Total energy + Delta-G solvation = -2224.323422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21888 -34.06809 -33.03322 -32.18310 -30.10390 -26.79309 -25.79119 -24.84789 -21.73025 -21.42976 -20.13555 -18.35959 -16.34955 -15.39575 -14.93298 -14.41120 -14.11891 -13.49576 -13.43577 -12.92187 -12.36703 -12.18131 -11.97346 -11.82109 -11.57514 -11.29992 -11.12314 -10.96061 -10.73817 -10.70211 -10.51039 -10.29980 -10.04623 -9.79502 -9.73986 -9.51282 -8.99461 -8.43220 -7.11098 -5.98503 -3.99555 3.32781 3.40236 3.45272 4.46763 5.01728 5.05499 5.10511 5.37284 5.47085 5.49196 5.57636 5.73849 5.77689 5.85436 5.96665 5.98130 6.15139 6.20922 6.24934 6.29536 6.33362 6.41995 6.52749 6.60858 6.61931 6.75493 6.81455 6.90581 7.11602 7.38021 7.51224 7.86756 8.22234 8.53888 8.72325 9.10949 9.65273 11.12308 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036068 B = 0.008527 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.133603 B = 3283.011601 C = 3490.275382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.108 4.108 8 H 0.063 0.937 9 C -0.151 4.151 10 C 0.093 3.907 11 N -0.677 5.677 12 C 0.195 3.805 13 C -0.508 4.508 14 H 0.061 0.939 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.327 0.673 35 H 0.025 0.975 36 H -0.014 1.014 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 6.205 -8.252 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.149 4.149 7 C -0.128 4.128 8 H 0.081 0.919 9 C -0.208 4.208 10 C -0.018 4.018 11 N -0.309 5.309 12 C 0.068 3.932 13 C -0.547 4.547 14 H 0.079 0.921 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.043 0.957 36 H 0.003 0.997 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.990 6.335 -8.412 12.639 hybrid contribution 0.280 -0.911 0.827 1.262 sum 7.270 5.423 -7.585 11.823 Atomic orbital electron populations 1.21671 0.95106 1.02874 0.99676 1.21065 0.95968 0.97042 0.95181 0.93016 1.21492 0.94249 1.02181 0.96643 1.21495 0.96746 0.99727 0.97290 1.21551 0.99074 1.00124 0.94193 1.21605 0.97230 0.99227 0.94736 0.91897 1.21883 0.99976 1.01626 0.97335 1.21539 0.91020 0.92674 0.96557 1.60703 1.29943 1.00507 1.39764 1.19629 0.92705 0.96445 0.84445 1.21246 1.32572 1.00144 1.00692 0.92076 1.24983 0.96572 0.97743 0.95365 1.69972 1.41627 1.37139 1.05126 0.86486 0.78841 0.84405 0.77925 1.19714 1.21220 1.21108 0.93662 0.94579 0.90781 0.93443 0.90421 0.92955 0.92769 0.92905 0.91335 0.91746 0.93361 0.92951 0.92514 0.85358 0.95684 0.99657 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.96 37.16 0.33 -1.94 16 2 C -0.07 -1.15 2.54 -90.62 -0.23 -1.38 16 3 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.56 5.05 -26.73 -0.13 -1.69 16 5 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 6 C -0.11 -1.53 5.02 -26.73 -0.13 -1.66 16 7 C -0.11 -1.63 2.46 -90.62 -0.22 -1.86 16 8 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.15 -2.37 8.82 37.15 0.33 -2.04 16 10 C 0.09 1.64 1.90 -67.71 -0.13 1.52 16 11 N -0.68 -14.01 4.50 -108.00 -0.49 -14.50 16 12 C 0.19 5.01 4.87 -4.98 -0.02 4.99 16 13 C -0.51 -14.32 9.36 -34.44 -0.32 -14.64 16 14 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.42 7.77 -51.93 -0.40 1.01 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.02 6.44 -51.93 -0.33 0.68 16 30 H 0.06 1.15 6.09 -51.93 -0.32 0.84 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.11 7.51 -51.93 -0.39 0.72 16 34 H 0.33 6.61 5.33 -39.29 -0.21 6.40 16 35 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 36 H -0.01 -0.39 7.42 -51.93 -0.39 -0.78 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 282.78 15.07 4.26 4.26 Total: -1.00 -28.66 282.78 -7.93 -36.58 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.63 Total: 1.93 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.79 Total: -18.88 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.25 Total: -40.73 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.66 -7.93 -36.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds