Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47566 * 2 1 4 4 C 1.52998 * 109.47375 * 239.99676 * 2 1 3 5 5 C 1.53001 * 109.47107 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47256 * 59.99956 * 5 4 2 7 7 C 1.52998 * 109.47099 * 300.00049 * 6 5 4 8 8 H 1.09006 * 109.46735 * 299.99897 * 7 6 5 9 9 C 1.52992 * 109.47273 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47107 * 59.99860 * 7 6 5 11 11 N 1.46895 * 109.47222 * 60.00149 * 10 7 6 12 12 C 1.46892 * 110.99902 * 114.29464 * 11 10 7 13 13 C 1.50704 * 109.47099 * 174.92929 * 12 11 10 14 14 H 1.08004 * 119.99937 * 0.27684 * 13 12 11 15 15 C 1.37880 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00146 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99582 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47348 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46968 * 120.00128 * 17 15 13 20 20 H 1.48503 * 109.46933 * 239.99413 * 17 15 13 21 21 H 1.08997 * 109.47291 * 294.87792 * 1 2 3 22 22 H 1.09005 * 109.46904 * 54.87844 * 1 2 3 23 23 H 1.08999 * 109.47191 * 174.87592 * 1 2 3 24 24 H 1.08994 * 109.47284 * 60.00135 * 4 2 1 25 25 H 1.09003 * 109.47144 * 299.99885 * 4 2 1 26 26 H 1.08997 * 109.47439 * 299.99548 * 5 4 2 27 27 H 1.09004 * 109.47035 * 180.02562 * 5 4 2 28 28 H 1.09006 * 109.46933 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46766 * 60.00214 * 6 5 4 30 30 H 1.09004 * 109.47420 * 294.19124 * 9 7 6 31 31 H 1.09008 * 109.47234 * 54.18954 * 9 7 6 32 32 H 1.08995 * 109.47423 * 174.18625 * 9 7 6 33 33 H 1.09003 * 109.46507 * 180.02562 * 10 7 6 34 34 H 1.00908 * 110.99590 * 350.34426 * 11 10 7 35 35 H 1.08997 * 109.47433 * 54.93233 * 12 11 10 36 36 H 1.08997 * 109.47765 * 294.92649 * 12 11 10 37 37 H 0.96998 * 119.99943 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0006 7 6 3.5695 -0.7221 1.2497 8 1 3.9332 0.3055 1.2498 9 6 4.0794 -1.4431 2.4990 10 6 2.0395 -0.7215 1.2493 11 7 1.5493 -2.1063 1.2491 12 6 0.8415 -2.4144 2.4988 13 6 0.2475 -3.7967 2.4121 14 1 0.3861 -4.3890 1.5197 15 6 -0.4686 -4.3072 3.4741 16 7 -0.6329 -3.5880 4.5628 17 14 -1.2043 -6.0209 3.3667 18 1 -0.8784 -6.6177 2.0466 19 1 -0.6408 -6.8699 4.4470 20 1 -2.6788 -5.9371 3.5213 21 1 -0.3634 0.4323 0.9323 22 1 -0.3633 0.5913 -0.8406 23 1 -0.3633 -1.0235 -0.0918 24 1 1.6768 -0.2076 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.9338 0.3057 -1.2487 27 1 3.9334 -1.2353 -2.1390 28 1 5.1696 -1.4441 0.0005 29 1 3.7158 -2.4709 0.0003 30 1 3.6337 -2.4365 2.5526 31 1 5.1645 -1.5341 2.4485 32 1 3.8036 -0.8727 3.3858 33 1 1.6762 -0.2072 2.1391 34 1 2.3042 -2.7570 1.0913 35 1 0.0456 -1.6861 2.6547 36 1 1.5416 -2.3715 3.3331 37 1 -1.1363 -3.9474 5.3100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -49.664813 kcal Electronic energy + Delta-G solvation = -14975.499865 eV Core-core repulsion = 12750.459222 eV Total energy + Delta-G solvation = -2225.040643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55903 -35.88202 -34.38232 -33.99758 -31.58342 -28.64885 -27.00301 -26.52987 -23.67112 -22.71054 -21.38594 -19.74651 -18.42893 -17.05459 -16.52734 -16.06148 -15.49890 -14.79067 -14.74094 -14.40803 -14.16259 -13.96198 -13.44582 -13.23258 -13.12949 -12.83064 -12.69461 -12.52520 -12.46811 -12.17887 -11.96047 -11.78522 -11.54652 -11.38729 -11.14515 -10.87662 -10.68553 -10.63025 -8.88450 -8.19832 -6.30172 1.39426 1.40214 1.53965 2.40356 3.12831 3.67265 3.79125 3.89713 4.05448 4.26508 4.36058 4.52168 4.53651 4.65348 4.69389 4.78002 4.88912 4.93387 5.00867 5.05984 5.08510 5.18048 5.21949 5.28669 5.32652 5.38705 5.46189 5.51748 5.55657 5.61837 5.67080 5.82537 6.10722 6.59037 6.83752 6.99178 7.40877 8.91224 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036068 B = 0.008527 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.133603 B = 3283.011601 C = 3490.275382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 H 0.075 0.925 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.109 4.109 7 C -0.102 4.102 8 H 0.084 0.916 9 C -0.148 4.148 10 C 0.088 3.912 11 N -0.669 5.669 12 C 0.216 3.784 13 C -0.527 4.527 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.280 1.280 21 H 0.027 0.973 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.331 0.669 35 H -0.009 1.009 36 H -0.041 1.041 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.842 6.252 -10.024 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 H 0.093 0.907 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.147 4.147 7 C -0.122 4.122 8 H 0.102 0.898 9 C -0.205 4.205 10 C -0.023 4.023 11 N -0.301 5.301 12 C 0.088 3.912 13 C -0.565 4.565 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.206 1.206 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.151 0.849 35 H 0.009 0.991 36 H -0.023 1.023 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.185 6.391 -10.203 14.558 hybrid contribution -0.083 -0.861 1.393 1.640 sum 8.102 5.530 -8.810 13.185 Atomic orbital electron populations 1.21630 0.96267 1.01203 0.99920 1.21076 0.94995 0.98135 0.94760 0.90695 1.21450 0.95803 1.00643 0.96351 1.21476 0.95049 1.00881 0.97296 1.21545 1.00436 0.98977 0.93735 1.21566 0.94730 1.00615 0.95259 0.89758 1.21854 1.01548 0.99753 0.97388 1.21658 0.93412 0.90475 0.96707 1.60614 1.30403 1.02496 1.36603 1.19193 0.91475 0.94813 0.85750 1.21585 1.32969 1.01111 1.00828 0.92085 1.25924 0.96875 1.02166 0.94853 1.70103 1.42337 1.39223 1.05929 0.85340 0.77897 0.79005 0.78382 1.18696 1.20396 1.20562 0.95359 0.91877 0.93841 0.91558 0.92836 0.91138 0.91056 0.90575 0.93040 0.94695 0.90603 0.94250 0.95363 0.84910 0.99063 1.02350 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.96 71.98 0.64 -3.81 16 2 C -0.07 -2.13 2.54 -10.79 -0.03 -2.16 16 3 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 4 C -0.10 -2.78 5.05 30.59 0.15 -2.62 16 5 C -0.11 -2.39 5.92 30.60 0.18 -2.21 16 6 C -0.11 -2.69 5.02 30.60 0.15 -2.54 16 7 C -0.10 -2.93 2.46 -10.80 -0.03 -2.95 16 8 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 9 C -0.15 -4.60 8.82 71.98 0.63 -3.97 16 10 C 0.09 3.14 1.90 44.92 0.09 3.22 16 11 N -0.67 -28.67 4.50 -495.59 -2.23 -30.91 16 12 C 0.22 11.73 4.87 85.56 0.42 12.15 16 13 C -0.53 -30.57 9.36 25.60 0.24 -30.33 16 14 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 16 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 17 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.04 1.70 7.77 -2.39 -0.02 1.68 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.68 7.60 -2.39 -0.02 1.66 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.05 1.45 6.44 -2.39 -0.02 1.44 16 30 H 0.03 1.27 6.09 -2.38 -0.01 1.26 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.16 7.51 -2.39 -0.02 1.14 16 34 H 0.33 13.74 5.33 -89.69 -0.48 13.27 16 35 H -0.01 -0.53 8.07 -2.39 -0.02 -0.55 16 36 H -0.04 -2.41 7.42 -2.39 -0.02 -2.43 16 37 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -63.40 282.78 3.53 -59.87 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.53 Total: 15.91 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 2.92 Total: -34.79 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -1.95 Total: -88.28 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -63.40 3.53 -59.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.206 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds