Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52992 * 109.47106 * 240.00064 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 C 1.52999 * 109.46961 * 180.02562 * 4 2 1 8 8 C 1.53002 * 109.47628 * 59.99659 * 7 4 2 9 9 C 1.53000 * 109.46806 * 300.00074 * 8 7 4 10 10 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 11 11 H 1.09004 * 109.47261 * 300.00059 * 10 2 1 12 12 N 1.46906 * 109.47110 * 60.00036 * 10 2 1 13 13 C 1.46903 * 110.99935 * 204.99918 * 12 10 2 14 14 C 1.50693 * 109.46968 * 180.02562 * 13 12 10 15 15 H 1.08008 * 120.00370 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00268 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99454 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00336 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47186 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47318 * 119.99886 * 18 16 14 21 21 H 1.48503 * 109.47266 * 240.00136 * 18 16 14 22 22 H 1.09002 * 109.47596 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 26 26 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 27 27 H 1.09004 * 109.47261 * 179.97438 * 6 4 2 28 28 H 1.09001 * 109.47362 * 180.02562 * 7 4 2 29 29 H 1.09002 * 109.46716 * 299.99630 * 7 4 2 30 30 H 1.09001 * 109.47142 * 180.02562 * 8 7 4 31 31 H 1.09002 * 109.46838 * 59.99718 * 8 7 4 32 32 H 1.08992 * 109.47399 * 299.99952 * 9 8 7 33 33 H 1.09004 * 109.46724 * 179.97438 * 9 8 7 34 34 H 1.00901 * 110.99872 * 328.95202 * 12 10 2 35 35 H 1.08996 * 109.46951 * 299.99774 * 13 12 10 36 36 H 1.08998 * 109.47373 * 60.00158 * 13 12 10 37 37 H 0.97003 * 119.99695 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -1.7489 -1.2492 6 6 1.5301 0.0000 -2.4984 7 6 3.5700 -0.7217 -1.2488 8 6 4.0796 -1.4433 0.0004 9 6 3.5695 -0.7220 1.2496 10 6 2.0399 -0.7212 1.2493 11 1 1.6766 -0.2073 2.1393 12 7 1.5502 -2.1062 1.2493 13 6 1.4874 -2.6424 2.6155 14 6 0.9825 -4.0617 2.5754 15 1 0.7336 -4.5198 1.6295 16 6 0.8383 -4.7755 3.7462 17 7 1.1418 -4.2177 4.8979 18 14 0.2131 -6.5350 3.6964 19 1 -0.0546 -6.9256 2.2889 20 1 1.2374 -7.4408 4.2758 21 1 -1.0411 -6.6372 4.4850 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 1.0277 -2.4984 26 1 0.4401 0.0000 -2.4985 27 1 1.8938 -0.5136 -3.3884 28 1 3.9334 -1.2352 -2.1390 29 1 3.9336 0.3058 -1.2486 30 1 5.1696 -1.4432 0.0008 31 1 3.7158 -2.4708 0.0003 32 1 3.9331 0.3055 1.2498 33 1 3.9322 -1.2363 2.1396 34 1 0.6526 -2.1724 0.7932 35 1 2.4827 -2.6236 3.0593 36 1 0.8110 -2.0326 3.2144 37 1 1.0407 -4.7200 5.7216 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = -33.153575 kcal Electronic energy + Delta-G solvation = -14828.241328 eV Core-core repulsion = 12603.916666 eV Total energy + Delta-G solvation = -2224.324662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.16755 -34.43801 -32.64635 -32.39826 -30.02415 -26.95437 -25.97466 -24.84165 -21.77796 -21.17142 -20.31983 -18.36328 -16.44684 -15.13601 -14.87187 -14.35689 -14.19939 -13.84491 -13.66740 -12.95050 -12.39841 -12.30790 -11.89878 -11.71739 -11.66047 -11.43857 -11.17817 -11.09624 -10.85986 -10.72830 -10.55055 -10.34552 -10.06991 -9.84240 -9.59948 -9.35712 -9.04797 -8.44072 -7.14732 -5.99802 -4.01123 3.32403 3.39656 3.44696 4.45870 4.98350 5.06713 5.07910 5.36080 5.39887 5.44980 5.63997 5.71282 5.74587 5.78817 5.90075 5.92379 6.02843 6.11905 6.16147 6.19976 6.30145 6.38149 6.38895 6.50170 6.69740 6.75308 6.81726 6.86649 7.06186 7.36878 7.50826 7.84653 8.20432 8.51218 8.71544 9.09501 9.63780 11.11393 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040156 B = 0.007655 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.121363 B = 3656.671778 C = 3775.852540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.063 0.937 4 C -0.082 4.082 5 H 0.082 0.918 6 C -0.149 4.149 7 C -0.106 4.106 8 C -0.110 4.110 9 C -0.103 4.103 10 C 0.089 3.911 11 H 0.031 0.969 12 N -0.680 5.680 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.328 0.672 35 H 0.027 0.973 36 H -0.017 1.017 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 8.512 -10.982 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.100 4.100 5 H 0.101 0.899 6 C -0.206 4.206 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.141 4.141 10 C -0.022 4.022 11 H 0.049 0.951 12 N -0.313 5.313 13 C 0.068 3.932 14 C -0.549 4.549 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.045 0.955 36 H 0.001 0.999 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.455 8.201 -10.917 13.873 hybrid contribution -1.078 -0.446 0.620 1.321 sum 1.376 7.755 -10.297 12.964 Atomic orbital electron populations 1.21948 0.95870 1.02174 1.01080 1.21273 0.95038 0.98685 0.95306 0.91884 1.21062 0.95273 1.00493 0.93170 0.89937 1.21923 1.00906 0.99989 0.97770 1.21513 0.95271 0.99632 0.97974 1.21381 0.98155 1.01500 0.93705 1.21454 0.95452 0.98677 0.98542 1.21430 0.95006 0.90710 0.95007 0.95095 1.60731 1.32393 1.16070 1.22127 1.19567 0.96293 0.94133 0.83249 1.21246 1.42906 0.97853 0.92911 0.92034 1.24990 0.95785 0.98434 0.95438 1.69980 1.49129 1.37074 0.97651 0.86465 0.78340 0.84685 0.78052 1.19690 1.21045 1.21169 0.92027 0.93139 0.92712 0.93398 0.92699 0.93246 0.92884 0.93227 0.93690 0.89966 0.93466 0.92025 0.85313 0.95493 0.99927 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.60 37.16 0.32 -1.81 16 2 C -0.08 -1.23 2.02 -90.62 -0.18 -1.41 16 3 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.08 -1.12 2.09 -90.63 -0.19 -1.31 16 5 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 6 C -0.15 -1.70 8.84 37.16 0.33 -1.37 16 7 C -0.11 -1.44 5.20 -26.73 -0.14 -1.58 16 8 C -0.11 -1.73 5.77 -26.73 -0.15 -1.89 16 9 C -0.10 -1.75 5.53 -26.75 -0.15 -1.90 16 10 C 0.09 1.60 2.30 -67.73 -0.16 1.45 16 11 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 12 N -0.68 -14.40 4.81 -108.01 -0.52 -14.92 16 13 C 0.19 5.13 5.24 -4.98 -0.03 5.10 16 14 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 15 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.50 7.60 -51.93 -0.39 1.11 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.18 7.45 -51.93 -0.39 0.79 16 34 H 0.33 6.73 6.00 -39.29 -0.24 6.50 16 35 H 0.03 0.77 7.43 -51.93 -0.39 0.38 16 36 H -0.02 -0.48 8.06 -51.93 -0.42 -0.90 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -29.19 281.47 -7.86 -37.05 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.53 Total: 1.33 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.77 Total: -18.14 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.22 Total: -41.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.19 -7.86 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.894 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds