Wall clock time and date at job start Mon Mar 30 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52992 * 109.47106 * 240.00064 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 C 1.52999 * 109.46961 * 180.02562 * 4 2 1 8 8 C 1.53002 * 109.47628 * 59.99659 * 7 4 2 9 9 C 1.53000 * 109.46806 * 300.00074 * 8 7 4 10 10 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 11 11 H 1.09004 * 109.47261 * 300.00059 * 10 2 1 12 12 N 1.46906 * 109.47110 * 60.00036 * 10 2 1 13 13 C 1.46903 * 110.99935 * 204.99918 * 12 10 2 14 14 C 1.50693 * 109.46968 * 180.02562 * 13 12 10 15 15 H 1.08008 * 120.00370 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00268 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99454 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00336 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47186 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47318 * 119.99886 * 18 16 14 21 21 H 1.48503 * 109.47266 * 240.00136 * 18 16 14 22 22 H 1.09002 * 109.47596 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 26 26 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 27 27 H 1.09004 * 109.47261 * 179.97438 * 6 4 2 28 28 H 1.09001 * 109.47362 * 180.02562 * 7 4 2 29 29 H 1.09002 * 109.46716 * 299.99630 * 7 4 2 30 30 H 1.09001 * 109.47142 * 180.02562 * 8 7 4 31 31 H 1.09002 * 109.46838 * 59.99718 * 8 7 4 32 32 H 1.08992 * 109.47399 * 299.99952 * 9 8 7 33 33 H 1.09004 * 109.46724 * 179.97438 * 9 8 7 34 34 H 1.00901 * 110.99872 * 328.95202 * 12 10 2 35 35 H 1.08996 * 109.46951 * 299.99774 * 13 12 10 36 36 H 1.08998 * 109.47373 * 60.00158 * 13 12 10 37 37 H 0.97003 * 119.99695 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -1.7489 -1.2492 6 6 1.5301 0.0000 -2.4984 7 6 3.5700 -0.7217 -1.2488 8 6 4.0796 -1.4433 0.0004 9 6 3.5695 -0.7220 1.2496 10 6 2.0399 -0.7212 1.2493 11 1 1.6766 -0.2073 2.1393 12 7 1.5502 -2.1062 1.2493 13 6 1.4874 -2.6424 2.6155 14 6 0.9825 -4.0617 2.5754 15 1 0.7336 -4.5198 1.6295 16 6 0.8383 -4.7755 3.7462 17 7 1.1418 -4.2177 4.8979 18 14 0.2131 -6.5350 3.6964 19 1 -0.0546 -6.9256 2.2889 20 1 1.2374 -7.4408 4.2758 21 1 -1.0411 -6.6372 4.4850 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 1.0277 -2.4984 26 1 0.4401 0.0000 -2.4985 27 1 1.8938 -0.5136 -3.3884 28 1 3.9334 -1.2352 -2.1390 29 1 3.9336 0.3058 -1.2486 30 1 5.1696 -1.4432 0.0008 31 1 3.7158 -2.4708 0.0003 32 1 3.9331 0.3055 1.2498 33 1 3.9322 -1.2363 2.1396 34 1 0.6526 -2.1724 0.7932 35 1 2.4827 -2.6236 3.0593 36 1 0.8110 -2.0326 3.2144 37 1 1.0407 -4.7200 5.7216 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036723362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:06 Heat of formation + Delta-G solvation = -50.441516 kcal Electronic energy + Delta-G solvation = -14828.990989 eV Core-core repulsion = 12603.916666 eV Total energy + Delta-G solvation = -2225.074323 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49052 -36.19478 -34.39638 -33.84437 -31.57681 -28.47208 -27.57895 -26.16723 -23.82565 -22.40864 -21.57026 -19.76094 -18.55117 -16.91466 -16.50622 -15.95450 -15.48649 -15.15134 -14.95900 -14.41141 -14.21412 -13.91472 -13.44236 -13.12849 -12.90013 -12.79804 -12.68754 -12.57425 -12.49280 -12.22325 -12.04110 -11.89497 -11.59435 -11.32105 -11.10773 -10.82103 -10.68484 -10.60298 -8.98999 -8.22952 -6.33970 1.39274 1.40126 1.54101 2.39123 3.10210 3.60969 3.83880 3.90427 3.98382 4.29781 4.37905 4.51139 4.58346 4.63483 4.71368 4.76768 4.88196 4.97087 5.02339 5.08136 5.12475 5.13842 5.16986 5.26341 5.31156 5.33534 5.41069 5.51689 5.60547 5.64591 5.65857 5.81463 6.05886 6.53074 6.78613 6.95019 7.37425 8.89045 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040156 B = 0.007655 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.121363 B = 3656.671778 C = 3775.852540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 H 0.083 0.917 4 C -0.080 4.080 5 H 0.058 0.942 6 C -0.142 4.142 7 C -0.101 4.101 8 C -0.107 4.107 9 C -0.103 4.103 10 C 0.083 3.917 11 H 0.009 0.991 12 N -0.672 5.672 13 C 0.213 3.787 14 C -0.531 4.531 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.277 1.277 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.332 0.668 35 H -0.004 1.004 36 H -0.048 1.048 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 8.863 -13.052 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.095 4.095 3 H 0.101 0.899 4 C -0.099 4.099 5 H 0.077 0.923 6 C -0.199 4.199 7 C -0.138 4.138 8 C -0.145 4.145 9 C -0.141 4.141 10 C -0.027 4.027 11 H 0.027 0.973 12 N -0.305 5.305 13 C 0.085 3.915 14 C -0.570 4.570 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.203 1.203 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.152 0.848 35 H 0.014 0.986 36 H -0.031 1.031 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.281 8.566 -13.010 15.743 hybrid contribution -0.989 -0.502 1.290 1.701 sum 1.292 8.064 -11.720 14.285 Atomic orbital electron populations 1.21937 0.95340 1.01444 1.02152 1.21244 0.95481 0.99153 0.93666 0.89863 1.21032 0.95564 0.99392 0.93915 0.92339 1.21857 1.01183 1.00451 0.96439 1.21492 0.94932 1.00494 0.96926 1.21331 0.99036 0.99776 0.94316 1.21460 0.94611 1.00043 0.97983 1.21590 0.95812 0.88920 0.96366 0.97269 1.60626 1.32589 1.18472 1.18765 1.19166 0.93445 0.93589 0.85323 1.21587 1.43301 0.98834 0.93247 0.91831 1.25975 0.95687 1.03335 0.94866 1.70113 1.49940 1.39126 0.98480 0.85283 0.77860 0.78555 0.78586 1.18580 1.20405 1.20275 0.93618 0.93795 0.89911 0.91970 0.92260 0.92296 0.91492 0.91265 0.92242 0.93167 0.90782 0.95370 0.84814 0.98606 1.03066 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.60 71.98 0.62 -3.38 16 2 C -0.08 -2.12 2.02 -10.80 -0.02 -2.14 16 3 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.08 -2.04 2.09 -10.80 -0.02 -2.06 16 5 H 0.06 1.78 7.48 -2.39 -0.02 1.76 16 6 C -0.14 -2.73 8.84 71.98 0.64 -2.09 16 7 C -0.10 -2.46 5.20 30.59 0.16 -2.30 16 8 C -0.11 -3.29 5.77 30.60 0.18 -3.12 16 9 C -0.10 -3.53 5.53 30.58 0.17 -3.36 16 10 C 0.08 3.06 2.30 44.90 0.10 3.16 16 11 H 0.01 0.38 7.80 -2.38 -0.02 0.36 16 12 N -0.67 -29.54 4.81 -495.64 -2.38 -31.92 16 13 C 0.21 11.84 5.24 85.55 0.45 12.29 16 14 C -0.53 -31.16 9.32 25.60 0.24 -30.92 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 17 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 18 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H 0.04 1.34 6.21 -2.39 -0.01 1.33 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 1.73 6.43 -2.39 -0.02 1.71 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.09 6.43 -2.39 -0.02 1.07 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.86 7.60 -2.39 -0.02 1.84 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 34 H 0.33 14.05 6.00 -89.69 -0.54 13.51 16 35 H 0.00 -0.25 7.43 -2.39 -0.02 -0.27 16 36 H -0.05 -2.92 8.06 -2.39 -0.02 -2.94 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -64.50 281.47 3.37 -61.13 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.48 Total: 14.85 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 2.97 Total: -33.51 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.10 Total: -89.74 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.50 3.37 -61.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.685 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds