Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46775 * 2 1 4 4 N 1.46908 * 109.47050 * 184.51444 * 3 2 1 5 5 C 1.46900 * 111.00090 * 77.61146 * 4 3 2 6 6 H 1.08992 * 109.46962 * 325.42676 * 5 4 3 7 7 C 1.50694 * 109.47118 * 205.42390 * 5 4 3 8 8 H 1.08003 * 119.99930 * 0.02562 * 7 5 4 9 9 C 1.37874 * 120.00342 * 180.02562 * 7 5 4 10 10 N 1.31516 * 119.99679 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00415 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47343 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47438 * 119.99556 * 11 9 7 14 14 H 1.48504 * 109.47227 * 239.99647 * 11 9 7 15 15 C 1.52998 * 109.46866 * 85.42559 * 5 4 3 16 16 C 1.52999 * 109.47181 * 299.28484 * 15 5 4 17 17 C 1.46903 * 110.99942 * 201.57120 * 4 3 2 18 18 C 1.52999 * 117.49816 * 138.51646 * 17 4 3 19 19 C 1.52995 * 117.50028 * 69.85424 * 17 4 3 20 20 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47180 * 299.99486 * 1 2 3 22 22 H 1.08992 * 109.47546 * 59.99932 * 1 2 3 23 23 H 1.09000 * 109.46426 * 240.00119 * 2 1 3 24 24 H 1.09000 * 109.47003 * 120.00407 * 2 1 3 25 25 H 1.08997 * 109.47448 * 64.51194 * 3 2 1 26 26 H 1.08998 * 109.47211 * 304.50842 * 3 2 1 27 27 H 0.97003 * 119.99860 * 180.02562 * 10 9 7 28 28 H 1.09002 * 109.47145 * 59.28426 * 15 5 4 29 29 H 1.08996 * 109.47268 * 179.28503 * 15 5 4 30 30 H 1.09005 * 109.47103 * 309.93398 * 16 15 5 31 31 H 1.08995 * 109.47488 * 69.93175 * 16 15 5 32 32 H 1.09004 * 109.47199 * 189.93309 * 16 15 5 33 33 H 1.09005 * 115.54248 * 284.18438 * 17 4 3 34 34 H 1.08999 * 117.50026 * 359.97438 * 18 17 4 35 35 H 1.08995 * 117.49556 * 145.01905 * 18 17 4 36 36 H 1.09001 * 117.49976 * 214.98267 * 19 17 4 37 37 H 1.09002 * 117.49850 * 0.02562 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4440 -0.1090 5 6 3.9303 1.1855 -1.4911 6 1 3.2344 0.4909 -1.9615 7 6 5.3129 0.5862 -1.4875 8 1 5.8244 0.4141 -0.5519 9 6 5.9251 0.2576 -2.6784 10 7 5.3020 0.4667 -3.8175 11 14 7.6387 -0.4859 -2.6738 12 1 8.1169 -0.6188 -1.2742 13 1 7.5987 -1.8257 -3.3130 14 1 8.5631 0.3962 -3.4306 15 6 3.9462 2.4999 -2.2740 16 6 2.5387 3.0994 -2.2929 17 6 4.0685 2.7062 0.3880 18 6 5.3376 2.6267 1.2389 19 6 3.9966 2.9676 1.8938 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.7441 1.9325 0.9276 26 1 1.6121 1.9791 -0.8468 27 1 5.7325 0.2352 -4.6554 28 1 4.6326 3.1991 -1.7962 29 1 4.2740 2.3102 -3.2960 30 1 1.8238 2.3385 -2.6062 31 1 2.2802 3.4514 -1.2942 32 1 2.5092 3.9355 -2.9917 33 1 3.9614 3.5630 -0.2773 34 1 5.7541 1.6378 1.4303 35 1 6.0652 3.4314 1.1338 36 1 3.8426 3.9964 2.2193 37 1 3.5315 2.2027 2.5157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037097279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = 11.763384 kcal Electronic energy + Delta-G solvation = -15121.867262 eV Core-core repulsion = 12899.490346 eV Total energy + Delta-G solvation = -2222.376916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08034 -36.33936 -35.21059 -33.61548 -31.46864 -29.11661 -26.19371 -24.65472 -23.11176 -22.65994 -21.74373 -20.18583 -18.50638 -17.19376 -16.47759 -16.20580 -15.71412 -15.32074 -14.68254 -14.47065 -13.92131 -13.53064 -13.29025 -13.11092 -12.98438 -12.72460 -12.51184 -12.29071 -12.21863 -12.05730 -11.97612 -11.80673 -11.58554 -11.15841 -11.02359 -10.85147 -10.56268 -10.36604 -8.64810 -8.04060 -6.12122 1.39789 1.42325 1.53593 2.45684 3.12984 3.23657 3.31350 4.19687 4.23599 4.28147 4.34633 4.45489 4.48540 4.53258 4.65403 4.72619 4.81313 4.86824 4.90106 4.96607 5.04779 5.10732 5.22259 5.24730 5.27036 5.36952 5.45985 5.51411 5.54998 5.64539 5.82280 5.93614 6.38720 6.69006 6.87363 7.02333 7.56105 9.01108 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.011470 C = 0.010090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.322250 B = 2440.539091 C = 2774.254672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.040 3.960 4 N -0.516 5.516 5 C 0.229 3.771 6 H 0.004 0.996 7 C -0.497 4.497 8 H 0.051 0.949 9 C 0.009 3.991 10 N -0.923 5.923 11 Si 0.950 3.050 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.283 1.283 15 C -0.143 4.143 16 C -0.141 4.141 17 C 0.003 3.997 18 C -0.168 4.168 19 C -0.155 4.155 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.258 0.742 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 4.364 7.823 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C -0.088 4.088 4 N -0.239 5.239 5 C 0.122 3.878 6 H 0.022 0.978 7 C -0.536 4.536 8 H 0.069 0.931 9 C -0.189 4.189 10 N -0.564 5.564 11 Si 0.777 3.223 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.183 4.183 16 C -0.198 4.198 17 C -0.106 4.106 18 C -0.206 4.206 19 C -0.193 4.193 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.982 3.947 7.940 10.696 hybrid contribution 0.876 -0.029 -1.088 1.397 sum -5.106 3.918 6.852 9.401 Atomic orbital electron populations 1.21670 0.93936 1.02047 1.02043 1.21446 0.96325 0.96753 1.00802 1.22499 0.88166 0.96947 1.01173 1.62002 1.08121 1.30487 1.23301 1.18996 0.94095 0.91717 0.83029 0.97805 1.21455 1.01378 1.38838 0.91930 0.93122 1.25615 1.01066 0.96780 0.95412 1.70019 1.38862 1.49895 0.97601 0.85618 0.80789 0.77956 0.77920 1.19507 1.21003 1.20885 1.22014 0.95176 0.98236 1.02836 1.22005 0.97392 0.99613 1.00821 1.22381 1.02515 0.92819 0.92841 1.22851 0.91379 1.01847 1.04485 1.23056 0.99930 1.02550 0.93730 0.92079 0.91401 0.93077 0.94877 0.92524 0.90760 0.93475 0.93329 0.94369 0.91992 0.93935 0.92103 0.93287 0.90128 0.90617 0.88728 0.86981 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.12 -3.93 6.10 30.59 0.19 -3.74 16 3 C 0.04 1.40 4.26 86.30 0.37 1.76 16 4 N -0.52 -21.72 4.37 -850.29 -3.72 -25.44 16 5 C 0.23 11.49 1.84 44.17 0.08 11.58 16 6 H 0.00 0.23 6.56 -2.39 -0.02 0.22 16 7 C -0.50 -27.75 8.62 25.60 0.22 -27.53 16 8 H 0.05 2.88 7.50 -2.91 -0.02 2.86 16 9 C 0.01 0.49 5.30 84.65 0.45 0.94 16 10 N -0.92 -53.77 11.31 21.45 0.24 -53.53 16 11 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 15 C -0.14 -6.80 4.66 30.59 0.14 -6.66 16 16 C -0.14 -5.42 7.96 71.98 0.57 -4.85 16 17 C 0.00 0.12 3.45 44.91 0.16 0.28 16 18 C -0.17 -5.92 10.41 30.62 0.32 -5.60 16 19 C -0.16 -4.55 9.76 30.62 0.30 -4.25 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.03 1.34 6.84 -2.39 -0.02 1.32 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.29 7.37 -2.39 -0.02 2.28 16 26 H 0.05 1.68 3.98 -2.39 -0.01 1.67 16 27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.04 1.81 6.13 -2.39 -0.01 1.79 16 29 H 0.06 3.38 6.05 -2.39 -0.01 3.37 16 30 H 0.04 1.65 7.32 -2.38 -0.02 1.63 16 31 H 0.06 2.10 5.11 -2.39 -0.01 2.09 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 3.08 4.93 -2.38 -0.01 3.07 16 34 H 0.08 2.99 7.88 -2.39 -0.02 2.97 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -59.93 281.93 3.08 -56.85 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.02 Total: 16.11 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.51 Total: -40.96 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.48 Total: -78.96 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -59.93 3.08 -56.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037097279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.610 kcal (2) G-P(sol) polarization free energy of solvation -59.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds