Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46872 * 2 1 4 4 C 1.50700 * 109.47441 * 120.00720 * 2 1 3 5 5 H 1.08000 * 120.00330 * 119.99916 * 4 2 1 6 6 C 1.37882 * 119.99440 * 299.99633 * 4 2 1 7 7 N 1.31509 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99574 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47278 * 60.00193 * 8 6 4 10 10 H 1.48502 * 109.47083 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47586 * 299.99887 * 8 6 4 12 12 N 1.46908 * 109.46719 * 240.00334 * 2 1 3 13 13 C 1.46903 * 110.99632 * 86.09093 * 12 2 1 14 14 H 1.09001 * 109.47037 * 326.21762 * 13 12 2 15 15 C 1.53004 * 109.46614 * 206.21766 * 13 12 2 16 16 C 1.53000 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47140 * 60.00123 * 16 15 13 18 18 C 1.52995 * 109.46975 * 299.99670 * 17 16 15 19 19 C 1.52997 * 109.47279 * 86.21928 * 13 12 2 20 20 H 1.09001 * 109.47037 * 299.99802 * 19 13 12 21 21 C 1.53003 * 109.47302 * 59.99904 * 19 13 12 22 22 H 1.09004 * 109.47028 * 305.70897 * 1 2 3 23 23 H 1.08998 * 109.47794 * 65.71510 * 1 2 3 24 24 H 1.09007 * 109.47164 * 185.71544 * 1 2 3 25 25 H 0.97001 * 119.99809 * 180.02562 * 7 6 4 26 26 H 1.00893 * 110.99883 * 322.13731 * 12 2 1 27 27 H 1.08991 * 109.47370 * 299.99930 * 15 13 12 28 28 H 1.09007 * 109.46967 * 60.00229 * 15 13 12 29 29 H 1.09004 * 109.47474 * 300.00101 * 16 15 13 30 30 H 1.09001 * 109.47127 * 180.02562 * 16 15 13 31 31 H 1.09001 * 109.46720 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47222 * 60.00110 * 17 16 15 33 33 H 1.09007 * 109.46777 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.47226 * 299.99631 * 18 17 16 35 35 H 1.08990 * 109.47496 * 180.02562 * 21 19 13 36 36 H 1.09001 * 109.46570 * 300.00174 * 21 19 13 37 37 H 1.08998 * 109.47386 * 59.99502 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1198 4.0077 9 1 3.8077 -1.1192 4.0075 10 1 1.8282 -0.4195 5.2203 11 1 1.8282 -2.5200 4.0080 12 7 2.0196 -0.6925 -1.1996 13 6 2.1069 0.2289 -2.3404 14 1 1.3055 0.9648 -2.2752 15 6 1.9701 -0.5599 -3.6444 16 6 2.0604 0.3998 -4.8326 17 6 3.4125 1.1153 -4.8087 18 6 3.5492 1.9039 -3.5049 19 6 3.4592 0.9439 -2.3163 20 1 3.5566 1.5057 -1.3873 21 6 4.5841 -0.0892 -2.4079 22 1 -0.3633 0.5998 0.8345 23 1 -0.3634 0.4226 -0.9367 24 1 -0.3634 -1.0226 0.1023 25 1 0.7089 1.1610 3.4844 26 1 1.4390 -1.4875 -1.4204 27 1 2.7714 -1.2958 -3.7096 28 1 1.0066 -1.0693 -3.6616 29 1 1.2588 1.1355 -4.7672 30 1 1.9625 -0.1620 -5.7616 31 1 3.4769 1.7986 -5.6556 32 1 4.2141 0.3796 -4.8742 33 1 4.5127 2.4134 -3.4877 34 1 2.7476 2.6396 -3.4395 35 1 5.5475 0.4201 -2.3902 36 1 4.5193 -0.7728 -1.5613 37 1 4.4867 -0.6511 -3.3368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -28.570097 kcal Electronic energy + Delta-G solvation = -14919.747197 eV Core-core repulsion = 12695.621290 eV Total energy + Delta-G solvation = -2224.125907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.96845 -35.18379 -32.35982 -31.45358 -29.80120 -27.07287 -25.52890 -24.97372 -22.06557 -21.52038 -19.82000 -17.98070 -16.28863 -15.37042 -14.77615 -14.58626 -14.26507 -13.53540 -13.27038 -12.81365 -12.48215 -12.14298 -11.94389 -11.55762 -11.31090 -11.13717 -11.07314 -10.86164 -10.74578 -10.52870 -10.50327 -10.08717 -10.05577 -9.81998 -9.69713 -9.34826 -8.88693 -8.30970 -7.11151 -5.93136 -3.95406 3.37341 3.41071 3.44570 4.48099 4.96563 5.05409 5.07536 5.38638 5.45385 5.57801 5.74913 5.77532 5.79740 5.85174 5.93268 6.11225 6.21597 6.25647 6.30454 6.42625 6.44624 6.47467 6.73451 6.75658 6.79185 6.89991 6.96441 7.09954 7.19330 7.48638 7.78935 7.96067 8.35914 8.65048 8.72204 9.11874 9.69597 11.14342 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047719 B = 0.007953 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.624936 B = 3519.723529 C = 3703.929384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.213 3.787 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.279 1.279 12 N -0.679 5.679 13 C 0.094 3.906 14 H 0.032 0.968 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.077 4.077 20 H 0.070 0.930 21 C -0.134 4.134 22 H 0.084 0.916 23 H 0.003 0.997 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.323 0.677 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 0.078 -12.131 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.105 3.895 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.308 5.308 13 C -0.016 4.016 14 H 0.050 0.950 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.097 4.097 20 H 0.088 0.912 21 C -0.191 4.191 22 H 0.102 0.898 23 H 0.022 0.978 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.470 0.263 -11.798 12.301 hybrid contribution -0.786 -0.221 0.727 1.093 sum 2.684 0.042 -11.071 11.392 Atomic orbital electron populations 1.22419 1.00938 1.00013 0.99159 1.19173 0.89314 0.94351 0.86689 0.94973 1.21138 1.30064 1.12292 0.89666 0.92078 1.24950 0.95416 0.95224 0.98980 1.69890 1.37437 1.23261 1.23299 0.86599 0.79155 0.79607 0.82213 1.20358 1.21537 1.20440 1.60791 1.57091 1.09392 1.03546 1.21384 0.95699 0.94389 0.90140 0.95011 1.21765 1.01381 0.98285 0.94549 1.21484 0.97529 0.98498 0.97788 1.21547 0.97628 0.99118 0.97269 1.21602 1.00958 0.97881 0.94894 1.21023 0.95500 0.95873 0.97256 0.91208 1.21735 0.96103 0.99166 1.02144 0.89777 0.97818 0.95227 0.93134 0.85984 0.91162 0.92824 0.92457 0.92642 0.92917 0.91770 0.92500 0.92587 0.94633 0.90826 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.85 37.16 0.33 -3.74 16 2 C 0.21 5.37 2.38 -68.86 -0.16 5.21 16 3 H 0.03 0.90 7.20 -51.93 -0.37 0.53 16 4 C -0.49 -13.75 8.84 -34.44 -0.30 -14.05 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.09 11.38 55.43 0.63 -25.46 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.68 -14.33 5.28 -100.95 -0.53 -14.86 16 13 C 0.09 1.70 1.97 -67.71 -0.13 1.57 16 14 H 0.03 0.63 7.18 -51.93 -0.37 0.26 16 15 C -0.12 -1.80 4.91 -26.73 -0.13 -1.93 16 16 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 17 C -0.12 -1.45 5.65 -26.73 -0.15 -1.61 16 18 C -0.12 -1.63 5.45 -26.71 -0.15 -1.77 16 19 C -0.08 -1.33 2.80 -90.59 -0.25 -1.58 16 20 H 0.07 1.39 7.53 -51.93 -0.39 1.00 16 21 C -0.13 -2.18 8.34 37.16 0.31 -1.87 16 22 H 0.08 2.27 6.24 -51.93 -0.32 1.95 16 23 H 0.00 0.06 7.47 -51.93 -0.39 -0.32 16 24 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.32 6.57 8.06 -39.30 -0.32 6.25 16 27 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 28 H 0.05 0.77 8.12 -51.92 -0.42 0.35 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.37 7.60 -51.93 -0.39 0.98 16 37 H 0.05 0.69 4.81 -51.93 -0.25 0.44 16 LS Contribution 278.15 15.07 4.19 4.19 Total: -1.00 -28.00 278.15 -8.03 -36.03 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.41 Total: 3.27 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.90 Total: -19.94 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.10 Total: -40.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.00 -8.03 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.461 kcal (2) G-P(sol) polarization free energy of solvation -27.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds