Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46872 * 2 1 4 4 C 1.50700 * 109.47441 * 120.00720 * 2 1 3 5 5 H 1.08000 * 120.00330 * 119.99916 * 4 2 1 6 6 C 1.37882 * 119.99440 * 299.99633 * 4 2 1 7 7 N 1.31509 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99574 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47278 * 60.00193 * 8 6 4 10 10 H 1.48502 * 109.47083 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47586 * 299.99887 * 8 6 4 12 12 N 1.46908 * 109.46719 * 240.00334 * 2 1 3 13 13 C 1.46903 * 110.99632 * 86.09093 * 12 2 1 14 14 H 1.09001 * 109.47037 * 326.21762 * 13 12 2 15 15 C 1.53004 * 109.46614 * 206.21766 * 13 12 2 16 16 C 1.53000 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47140 * 60.00123 * 16 15 13 18 18 C 1.52995 * 109.46975 * 299.99670 * 17 16 15 19 19 C 1.52997 * 109.47279 * 86.21928 * 13 12 2 20 20 H 1.09001 * 109.47037 * 299.99802 * 19 13 12 21 21 C 1.53003 * 109.47302 * 59.99904 * 19 13 12 22 22 H 1.09004 * 109.47028 * 305.70897 * 1 2 3 23 23 H 1.08998 * 109.47794 * 65.71510 * 1 2 3 24 24 H 1.09007 * 109.47164 * 185.71544 * 1 2 3 25 25 H 0.97001 * 119.99809 * 180.02562 * 7 6 4 26 26 H 1.00893 * 110.99883 * 322.13731 * 12 2 1 27 27 H 1.08991 * 109.47370 * 299.99930 * 15 13 12 28 28 H 1.09007 * 109.46967 * 60.00229 * 15 13 12 29 29 H 1.09004 * 109.47474 * 300.00101 * 16 15 13 30 30 H 1.09001 * 109.47127 * 180.02562 * 16 15 13 31 31 H 1.09001 * 109.46720 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47222 * 60.00110 * 17 16 15 33 33 H 1.09007 * 109.46777 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.47226 * 299.99631 * 18 17 16 35 35 H 1.08990 * 109.47496 * 180.02562 * 21 19 13 36 36 H 1.09001 * 109.46570 * 300.00174 * 21 19 13 37 37 H 1.08998 * 109.47386 * 59.99502 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1198 4.0077 9 1 3.8077 -1.1192 4.0075 10 1 1.8282 -0.4195 5.2203 11 1 1.8282 -2.5200 4.0080 12 7 2.0196 -0.6925 -1.1996 13 6 2.1069 0.2289 -2.3404 14 1 1.3055 0.9648 -2.2752 15 6 1.9701 -0.5599 -3.6444 16 6 2.0604 0.3998 -4.8326 17 6 3.4125 1.1153 -4.8087 18 6 3.5492 1.9039 -3.5049 19 6 3.4592 0.9439 -2.3163 20 1 3.5566 1.5057 -1.3873 21 6 4.5841 -0.0892 -2.4079 22 1 -0.3633 0.5998 0.8345 23 1 -0.3634 0.4226 -0.9367 24 1 -0.3634 -1.0226 0.1023 25 1 0.7089 1.1610 3.4844 26 1 1.4390 -1.4875 -1.4204 27 1 2.7714 -1.2958 -3.7096 28 1 1.0066 -1.0693 -3.6616 29 1 1.2588 1.1355 -4.7672 30 1 1.9625 -0.1620 -5.7616 31 1 3.4769 1.7986 -5.6556 32 1 4.2141 0.3796 -4.8742 33 1 4.5127 2.4134 -3.4877 34 1 2.7476 2.6396 -3.4395 35 1 5.5475 0.4201 -2.3902 36 1 4.5193 -0.7728 -1.5613 37 1 4.4867 -0.6511 -3.3368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -44.967558 kcal Electronic energy + Delta-G solvation = -14920.458244 eV Core-core repulsion = 12695.621290 eV Total energy + Delta-G solvation = -2224.836954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30619 -36.97167 -34.28519 -32.67549 -31.42624 -28.63613 -27.29014 -26.77281 -23.36071 -22.92002 -21.57338 -19.32461 -18.32168 -16.76469 -16.74178 -16.09202 -15.53561 -15.16519 -14.63600 -14.43551 -14.07173 -13.57264 -13.39797 -13.27502 -13.00270 -12.83005 -12.60158 -12.41951 -12.26551 -12.14702 -11.97640 -11.96003 -11.74214 -11.15905 -11.07785 -10.82104 -10.71432 -10.47953 -8.87886 -8.08881 -6.19426 1.41981 1.43989 1.51632 2.44037 3.19455 3.58683 3.85840 3.92865 4.20817 4.39705 4.45848 4.53955 4.59043 4.64131 4.73581 4.76217 4.86172 4.88506 5.03267 5.06716 5.11306 5.18817 5.23583 5.28614 5.30615 5.46174 5.51521 5.52684 5.60899 5.70876 5.74939 5.87254 6.29978 6.71361 6.90331 6.99492 7.50609 8.96992 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047719 B = 0.007953 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.624936 B = 3519.723529 C = 3703.929384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.220 3.780 3 H -0.005 1.005 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.093 3.907 14 H 0.010 0.990 15 C -0.115 4.115 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.079 4.079 20 H 0.027 0.973 21 C -0.126 4.126 22 H 0.056 0.944 23 H 0.022 0.978 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -0.716 -13.768 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.112 3.888 3 H 0.013 0.987 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.308 5.308 13 C -0.017 4.017 14 H 0.028 0.972 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.099 4.099 20 H 0.045 0.955 21 C -0.183 4.183 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.092 -0.537 -13.454 14.073 hybrid contribution -0.977 0.061 1.219 1.563 sum 3.115 -0.477 -12.236 12.635 Atomic orbital electron populations 1.22221 1.00335 0.99645 0.98953 1.18880 0.89598 0.92422 0.87940 0.98660 1.21444 1.30249 1.12328 0.91087 0.92729 1.25740 0.95541 0.95903 1.01944 1.70027 1.38228 1.24390 1.23922 0.85588 0.78600 0.78735 0.78528 1.19989 1.21029 1.19539 1.60684 1.56666 1.09865 1.03591 1.21485 0.95510 0.93896 0.90824 0.97179 1.21713 1.01832 0.98412 0.93304 1.21493 0.97717 0.98169 0.97632 1.21543 0.97580 0.99422 0.96539 1.21566 1.01464 0.97286 0.94603 1.21012 0.95489 0.96412 0.96963 0.95485 1.21648 0.96297 0.98476 1.01892 0.92488 0.95942 0.94949 0.93118 0.85397 0.90615 0.92428 0.92774 0.90013 0.90538 0.90987 0.91309 0.93189 0.93320 0.93868 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.60 8.85 71.98 0.64 -6.96 16 2 C 0.22 11.51 2.38 44.17 0.11 11.62 16 3 H 0.00 -0.27 7.20 -2.39 -0.02 -0.28 16 4 C -0.51 -29.23 8.84 25.60 0.23 -29.00 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.37 5.30 84.66 0.45 0.82 16 7 N -0.93 -54.91 11.38 21.45 0.24 -54.67 16 8 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 N -0.68 -29.11 5.28 -473.29 -2.50 -31.61 16 13 C 0.09 3.35 1.97 44.92 0.09 3.44 16 14 H 0.01 0.41 7.18 -2.39 -0.02 0.39 16 15 C -0.11 -3.15 4.91 30.60 0.15 -3.00 16 16 C -0.11 -2.47 5.92 30.59 0.18 -2.28 16 17 C -0.11 -2.39 5.65 30.59 0.17 -2.22 16 18 C -0.11 -2.97 5.45 30.61 0.17 -2.80 16 19 C -0.08 -2.74 2.80 -10.78 -0.03 -2.77 16 20 H 0.03 1.13 7.53 -2.39 -0.02 1.12 16 21 C -0.13 -3.97 8.34 71.98 0.60 -3.37 16 22 H 0.06 3.16 6.24 -2.38 -0.01 3.14 16 23 H 0.02 0.99 7.47 -2.39 -0.02 0.97 16 24 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.33 13.32 8.06 -89.70 -0.72 12.60 16 27 H 0.08 2.01 6.43 -2.39 -0.02 2.00 16 28 H 0.06 1.54 8.12 -2.38 -0.02 1.52 16 29 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.44 6.43 -2.39 -0.02 1.42 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 37 H 0.07 1.86 4.81 -2.39 -0.01 1.85 16 Total: -1.00 -61.24 278.15 2.82 -58.41 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.30 Total: 17.33 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 2.75 Total: -36.53 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.26 Total: -86.28 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -61.24 2.82 -58.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.447 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds