Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46756 * 2 1 4 4 N 1.46500 * 109.46872 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.99937 * 275.69154 * 4 3 2 6 6 H 1.07994 * 120.00262 * 321.98827 * 5 4 3 7 7 C 1.38815 * 119.99527 * 141.98993 * 5 4 3 8 8 N 1.31621 * 119.99774 * 157.25045 * 7 5 4 9 9 Si 1.86796 * 120.00130 * 337.24950 * 7 5 4 10 10 H 1.48502 * 109.47166 * 95.83672 * 9 7 5 11 11 H 1.48498 * 109.46960 * 215.83039 * 9 7 5 12 12 H 1.48493 * 109.47535 * 335.83524 * 9 7 5 13 13 C 1.46499 * 119.99944 * 95.42098 * 4 3 2 14 14 C 1.52997 * 109.47454 * 89.99930 * 13 4 3 15 15 C 1.54278 * 110.03021 * 292.90991 * 14 13 4 16 16 C 1.54961 * 104.15818 * 217.13665 * 15 14 13 17 17 C 1.54896 * 102.77917 * 37.88503 * 16 15 14 18 18 C 1.53876 * 110.03445 * 175.69163 * 14 13 4 19 19 H 1.08992 * 109.47361 * 299.99829 * 1 2 3 20 20 H 1.08995 * 109.46830 * 60.00226 * 1 2 3 21 21 H 1.09001 * 109.46475 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47386 * 240.00319 * 2 1 3 23 23 H 1.09000 * 109.47251 * 119.99610 * 2 1 3 24 24 H 1.09001 * 109.46913 * 60.00029 * 3 2 1 25 25 H 1.08997 * 109.47779 * 300.00070 * 3 2 1 26 26 H 0.97000 * 120.00316 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.46978 * 209.99645 * 13 4 3 28 28 H 1.09004 * 109.46864 * 329.99533 * 13 4 3 29 29 H 1.08995 * 110.01686 * 54.29507 * 14 13 4 30 30 H 1.08999 * 110.48157 * 335.78076 * 15 14 13 31 31 H 1.08998 * 110.48549 * 98.42385 * 15 14 13 32 32 H 1.09005 * 110.72165 * 279.57419 * 16 15 14 33 33 H 1.09001 * 110.92611 * 156.29174 * 16 15 14 34 34 H 1.09003 * 110.48503 * 203.40593 * 17 16 15 35 35 H 1.09005 * 110.59680 * 80.81946 * 17 16 15 36 36 H 1.08997 * 110.03187 * 238.56498 * 18 14 13 37 37 H 1.09003 * 110.03059 * 359.95270 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3252 1.1811 6 1 3.8207 1.8155 2.0699 7 6 5.3565 0.5759 1.2350 8 7 6.2412 0.8032 2.1827 9 14 5.6718 -0.7550 -0.0373 10 1 6.5155 -0.2061 -1.1291 11 1 6.3728 -1.8964 0.6037 12 1 4.3779 -1.2204 -0.5980 13 6 4.2380 1.5623 -1.2621 14 6 4.4931 3.0400 -1.5658 15 6 3.1591 3.7571 -1.8594 16 6 3.5099 4.7653 -2.9826 17 6 4.5150 3.9715 -3.8539 18 6 5.3551 3.1766 -2.8331 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6767 1.9565 -0.8899 26 1 7.0567 0.2794 2.2207 27 1 5.1904 1.0385 -1.1804 28 1 3.6492 1.1223 -2.0671 29 1 4.9934 3.5134 -0.7210 30 1 2.4113 3.0442 -2.2068 31 1 2.8044 4.2814 -0.9721 32 1 3.9791 5.6573 -2.5674 33 1 2.6236 5.0297 -3.5593 34 1 5.1489 4.6528 -4.4215 35 1 3.9883 3.2933 -4.5252 36 1 6.2733 3.7171 -2.6036 37 1 5.5924 2.1900 -3.2313 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -22.895102 kcal Electronic energy + Delta-G solvation = -14954.695085 eV Core-core repulsion = 12730.815264 eV Total energy + Delta-G solvation = -2223.879821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64691 -37.35134 -34.58499 -33.22100 -30.55828 -29.48617 -27.52020 -26.08576 -23.63933 -21.70008 -21.31256 -20.61382 -18.73763 -17.25186 -16.79047 -15.89868 -15.81681 -15.59594 -14.70821 -14.60085 -14.26189 -14.17222 -13.99844 -13.10774 -12.84370 -12.67657 -12.49145 -12.28382 -12.17574 -11.90950 -11.88678 -11.78378 -11.63758 -11.43204 -11.33140 -11.19490 -11.07625 -10.58833 -8.70047 -8.20062 -5.54749 1.26844 1.37167 1.48777 2.41362 3.04950 3.39522 3.83916 3.91437 3.94640 4.24116 4.39377 4.43716 4.60091 4.61828 4.64747 4.70255 4.75863 4.84798 4.89841 4.96933 5.02230 5.03379 5.16308 5.19074 5.23060 5.26390 5.37094 5.42635 5.50008 5.53902 5.59864 5.65479 5.98163 6.18708 7.03601 7.67951 8.10425 9.00572 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.013719 C = 0.009850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.284856 B = 2040.546067 C = 2841.853355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.616 5.616 5 C -0.246 4.246 6 H 0.037 0.963 7 C -0.020 4.020 8 N -0.951 5.951 9 Si 0.937 3.063 10 H -0.277 1.277 11 H -0.311 1.311 12 H -0.257 1.257 13 C 0.143 3.857 14 C -0.108 4.108 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.124 4.124 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.261 0.739 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 3.735 -12.959 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.022 3.978 4 N -0.338 5.338 5 C -0.376 4.376 6 H 0.055 0.945 7 C -0.216 4.216 8 N -0.596 5.596 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.240 1.240 12 H -0.181 1.181 13 C 0.019 3.981 14 C -0.129 4.129 15 C -0.141 4.141 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.162 4.162 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.152 3.697 -12.886 15.690 hybrid contribution 0.897 -0.892 0.370 1.317 sum -7.255 2.805 -12.517 14.737 Atomic orbital electron populations 1.21650 0.93829 1.01840 1.02206 1.22055 0.96737 0.99371 1.00101 1.21154 0.82161 0.94545 0.99931 1.44273 1.01872 1.85345 1.02329 1.18609 1.05554 1.24190 0.89265 0.94519 1.26024 0.97086 0.99837 0.98644 1.70005 1.09513 1.41926 1.38149 0.85932 0.78250 0.79977 0.79159 1.20460 1.24046 1.18103 1.21332 0.94762 0.94712 0.87337 1.22223 0.96883 0.97196 0.96623 1.22311 0.96024 0.97673 0.98054 1.22516 0.99406 0.97421 0.96344 1.22315 0.97430 0.98506 0.96855 1.22205 0.98441 1.00249 0.95311 0.92687 0.91429 0.92432 0.93726 0.94890 0.94620 0.90898 0.93036 0.95747 0.92261 0.94561 0.91218 0.93351 0.92000 0.89875 0.90562 0.90772 0.92680 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.14 -5.16 6.23 30.60 0.19 -4.97 16 3 C 0.15 5.69 5.29 86.38 0.46 6.15 16 4 N -0.62 -29.08 2.00 -702.00 -1.40 -30.48 16 5 C -0.25 -14.22 9.90 84.03 0.83 -13.39 16 6 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 7 C -0.02 -1.19 5.29 84.86 0.45 -0.74 16 8 N -0.95 -60.95 13.97 21.65 0.30 -60.65 16 9 Si 0.94 47.66 25.07 68.60 1.72 49.38 16 10 H -0.28 -13.51 6.68 99.48 0.67 -12.85 16 11 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 12 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.14 6.11 3.63 86.38 0.31 6.42 16 14 C -0.11 -4.07 3.15 -10.07 -0.03 -4.10 16 15 C -0.10 -3.14 5.31 31.70 0.17 -2.97 16 16 C -0.12 -2.83 6.91 31.91 0.22 -2.61 16 17 C -0.11 -2.64 6.83 31.67 0.22 -2.43 16 18 C -0.12 -3.82 6.46 31.32 0.20 -3.62 16 19 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 25 H 0.07 2.39 5.76 -2.39 -0.01 2.38 16 26 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.02 1.17 3.35 -2.39 -0.01 1.16 16 28 H 0.06 2.23 7.95 -2.39 -0.02 2.22 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.99 6.17 -2.39 -0.01 1.97 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.76 7.67 -2.39 -0.02 1.74 16 Total: -1.00 -65.76 283.91 5.31 -60.45 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.96 Total: 6.49 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 3.73 Total: -25.19 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -1.10 Total: -91.13 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.72 Total: 49.38 kcal Total: -65.76 5.31 -60.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.553 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds