Wall clock time and date at job start Mon Mar 30 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46846 * 110.99937 * 184.21248 * 12 2 1 14 14 C 1.53033 * 109.52188 * 174.16022 * 13 12 2 15 15 H 1.08995 * 109.50554 * 299.23521 * 14 13 12 16 16 C 1.53006 * 109.53746 * 179.13901 * 14 13 12 17 17 C 1.53124 * 109.28194 * 59.17806 * 14 13 12 18 18 C 1.53112 * 109.15575 * 302.34693 * 17 14 13 19 19 H 1.09005 * 109.50062 * 177.59349 * 18 17 14 20 20 C 1.53000 * 109.53542 * 297.68812 * 18 17 14 21 21 C 1.46845 * 111.00273 * 59.99884 * 12 2 1 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.46207 * 294.17040 * 13 12 2 27 27 H 1.08997 * 109.46242 * 54.14057 * 13 12 2 28 28 H 1.09003 * 109.46433 * 300.17724 * 16 14 13 29 29 H 1.09001 * 109.46884 * 60.17077 * 16 14 13 30 30 H 1.08996 * 109.47537 * 180.17986 * 16 14 13 31 31 H 1.08998 * 109.52511 * 182.44245 * 17 14 13 32 32 H 1.09001 * 109.52101 * 62.25036 * 17 14 13 33 33 H 1.09010 * 109.46996 * 179.82336 * 20 18 17 34 34 H 1.08994 * 109.47865 * 299.82571 * 20 18 17 35 35 H 1.09000 * 109.46819 * 59.83338 * 20 18 17 36 36 H 1.09000 * 109.46396 * 305.86160 * 21 12 2 37 37 H 1.09003 * 109.45840 * 65.82097 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 7 2.0196 -0.6924 -1.1995 13 6 3.4841 -0.7998 -1.1842 14 6 3.9469 -1.6499 -2.3695 15 1 3.5205 -2.6497 -2.2889 16 6 5.4741 -1.7443 -2.3662 17 6 3.4780 -0.9977 -3.6732 18 6 1.9539 -0.8535 -3.6429 19 1 1.6179 -0.3509 -4.5499 20 6 1.3105 -2.2390 -3.5583 21 6 1.5488 -0.0265 -2.4207 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7006 1.1552 3.4844 26 1 3.9221 0.1956 -1.2583 27 1 3.8041 -1.2690 -0.2539 28 1 5.9000 -0.7440 -2.4455 29 1 5.8073 -2.2085 -1.4380 30 1 5.8028 -2.3472 -3.2126 31 1 3.7680 -1.6225 -4.5179 32 1 3.9352 -0.0133 -3.7730 33 1 0.2256 -2.1349 -3.5336 34 1 1.5992 -2.8276 -4.4290 35 1 1.6478 -2.7415 -2.6518 36 1 0.4632 0.0661 -2.3884 37 1 1.9958 0.9654 -2.4888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048208943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:35 Heat of formation + Delta-G solvation = -32.709943 kcal Electronic energy + Delta-G solvation = -15125.176059 eV Core-core repulsion = 12900.870634 eV Total energy + Delta-G solvation = -2224.305424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40587 -36.59245 -34.21629 -33.80645 -30.55499 -28.18975 -27.41028 -26.57339 -24.81306 -22.48808 -21.23456 -19.52062 -18.30572 -17.27497 -16.16512 -15.93308 -15.35620 -15.20807 -14.80795 -14.46654 -14.30786 -13.66528 -13.42557 -12.98460 -12.94290 -12.83143 -12.67294 -12.47762 -12.32126 -12.13907 -12.01685 -11.88209 -11.73325 -11.36819 -11.08921 -10.83295 -10.70145 -10.47417 -8.85277 -8.11315 -6.23240 1.41135 1.43178 1.50681 2.41707 3.15895 3.37646 3.89017 3.98748 4.10692 4.27046 4.41960 4.62399 4.68374 4.75313 4.79750 4.84083 4.91118 4.95211 4.97958 5.03873 5.05737 5.13975 5.21130 5.25577 5.32423 5.37444 5.46417 5.54038 5.55704 5.72489 5.75443 5.83788 6.26704 6.46323 6.80873 6.92881 7.45934 8.94658 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.009987 C = 0.008491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.074154 B = 2802.880463 C = 3297.011411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.216 3.784 3 H -0.046 1.046 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.531 5.531 13 C 0.072 3.928 14 C -0.087 4.087 15 H 0.074 0.926 16 C -0.139 4.139 17 C -0.103 4.103 18 C -0.084 4.084 19 H 0.085 0.915 20 C -0.131 4.131 21 C 0.053 3.947 22 H 0.028 0.972 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.261 0.739 26 H 0.000 1.000 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -4.630 -11.502 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 H -0.029 1.029 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.255 5.255 13 C -0.056 4.056 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.197 4.197 17 C -0.140 4.140 18 C -0.103 4.103 19 H 0.103 0.897 20 C -0.188 4.188 21 C -0.075 4.075 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 4.265 -4.983 -11.355 13.113 hybrid contribution 0.337 0.953 1.297 1.644 sum 4.601 -4.030 -10.058 11.772 Atomic orbital electron populations 1.21635 0.97307 0.99173 0.99544 1.19022 0.92644 0.89822 0.87662 1.02884 1.21393 1.30967 1.12280 0.90946 0.92295 1.25736 0.95383 0.95803 1.01960 1.70019 1.37780 1.24310 1.24060 0.85585 0.78691 0.78751 0.78456 1.19699 1.20938 1.19569 1.61966 1.09828 1.51963 1.01749 1.21995 0.87865 0.96850 0.98931 1.21214 0.96132 0.99304 0.93923 0.90794 1.21748 0.94009 1.01754 1.02164 1.21633 0.94669 1.00465 0.97246 1.21177 0.96041 0.96934 0.96142 0.89712 1.21660 0.99620 0.95863 1.01647 1.22208 0.99802 0.94351 0.91180 0.95317 0.94959 0.92250 0.92965 0.98218 0.92326 0.93131 0.93139 0.90589 0.89728 0.92883 0.93694 0.91594 0.93094 0.91618 0.97642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.75 71.98 0.63 -5.40 16 2 C 0.22 11.45 2.07 44.17 0.09 11.54 16 3 H -0.05 -2.78 8.14 -2.38 -0.02 -2.80 16 4 C -0.52 -29.25 7.86 25.60 0.20 -29.05 16 5 H 0.06 3.30 6.40 -2.91 -0.02 3.28 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.36 11.31 21.45 0.24 -54.12 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.53 -23.39 3.80 -875.52 -3.33 -26.72 16 13 C 0.07 2.92 4.49 86.32 0.39 3.31 16 14 C -0.09 -2.64 2.53 -10.74 -0.03 -2.67 16 15 H 0.07 2.31 6.58 -2.39 -0.02 2.29 16 16 C -0.14 -3.47 9.20 71.98 0.66 -2.81 16 17 C -0.10 -2.69 4.79 30.67 0.15 -2.54 16 18 C -0.08 -2.40 3.21 -10.75 -0.03 -2.43 16 19 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 20 C -0.13 -3.59 8.75 71.98 0.63 -2.96 16 21 C 0.05 1.98 4.65 86.32 0.40 2.38 16 22 H 0.03 1.29 6.28 -2.38 -0.01 1.27 16 23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 3.32 6.06 -2.38 -0.01 3.30 16 25 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 27 H 0.06 2.64 6.02 -2.39 -0.01 2.63 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.64 6.01 -2.39 -0.01 1.63 16 36 H 0.07 2.50 6.01 -2.39 -0.01 2.49 16 37 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -61.15 276.95 3.49 -57.66 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.01 Total: 6.32 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.54 Total: -29.63 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -3.09 Total: -80.84 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -61.15 3.49 -57.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.953 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds