Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47191 * 2 1 4 4 C 1.50695 * 109.47203 * 120.00102 * 2 1 3 5 5 H 1.08001 * 120.00149 * 119.99774 * 4 2 1 6 6 C 1.37876 * 119.99954 * 299.99994 * 4 2 1 7 7 N 1.31514 * 120.00001 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47094 * 60.00117 * 8 6 4 10 10 H 1.48500 * 109.47556 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47086 * 300.00330 * 8 6 4 12 12 N 1.46902 * 109.47119 * 240.00103 * 2 1 3 13 13 C 1.46842 * 110.99811 * 53.87282 * 12 2 1 14 14 C 1.53040 * 109.52137 * 185.83955 * 13 12 2 15 15 C 1.53121 * 109.27641 * 300.81581 * 14 13 12 16 16 C 1.53121 * 109.16103 * 57.65865 * 15 14 13 17 17 H 1.09001 * 109.50379 * 62.27982 * 16 15 14 18 18 C 1.52991 * 109.50540 * 182.40277 * 16 15 14 19 19 C 1.46847 * 110.99681 * 178.07784 * 12 2 1 20 20 H 1.09003 * 109.46583 * 54.16153 * 19 12 2 21 21 C 1.52997 * 109.46699 * 294.17687 * 19 12 2 22 22 H 1.08996 * 109.47367 * 293.48364 * 1 2 3 23 23 H 1.09003 * 109.47063 * 53.49189 * 1 2 3 24 24 H 1.09006 * 109.47048 * 173.48587 * 1 2 3 25 25 H 0.97002 * 119.99750 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.46480 * 305.85096 * 13 12 2 27 27 H 1.09000 * 109.46984 * 65.83482 * 13 12 2 28 28 H 1.09002 * 109.50727 * 60.76211 * 14 13 12 29 29 H 1.09003 * 109.50704 * 180.87897 * 14 13 12 30 30 H 1.09001 * 109.51916 * 177.55716 * 15 14 13 31 31 H 1.08993 * 109.52717 * 297.74753 * 15 14 13 32 32 H 1.09005 * 109.47397 * 179.80069 * 18 16 15 33 33 H 1.09003 * 109.47560 * 299.79953 * 18 16 15 34 34 H 1.09004 * 109.47626 * 59.80106 * 18 16 15 35 35 H 1.08997 * 109.46898 * 55.29196 * 21 19 12 36 36 H 1.09004 * 109.47353 * 175.29333 * 21 19 12 37 37 H 1.09004 * 109.46764 * 295.29436 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0082 10 1 1.8260 -0.4207 5.2205 11 1 1.8258 -2.5203 4.0077 12 7 2.0197 -0.6925 -1.1995 13 6 1.4330 -0.1163 -2.4161 14 6 1.8493 -0.9509 -3.6294 15 6 3.3769 -0.9641 -3.7338 16 6 3.9646 -1.5236 -2.4352 17 1 3.6323 -2.5528 -2.2991 18 6 5.4923 -1.4846 -2.5075 19 6 3.4869 -0.6723 -1.2565 20 1 3.8921 -1.0768 -0.3290 21 6 3.9704 0.7678 -1.4388 22 1 -0.3634 0.4095 0.9425 23 1 -0.3633 0.6114 -0.8260 24 1 -0.3633 -1.0211 -0.1166 25 1 0.7087 1.1612 3.4844 26 1 0.3465 -0.1166 -2.3307 27 1 1.7872 0.9070 -2.5407 28 1 1.4837 -1.9711 -3.5121 29 1 1.4266 -0.5140 -4.5341 30 1 3.6793 -1.5931 -4.5711 31 1 3.7402 0.0515 -3.8901 32 1 5.9101 -1.8798 -1.5814 33 1 5.8320 -2.0911 -3.3471 34 1 5.8235 -0.4553 -2.6453 35 1 3.5617 1.3915 -0.6438 36 1 5.0593 0.7935 -1.3975 37 1 3.6344 1.1442 -2.4051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050564802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = -10.908976 kcal Electronic energy + Delta-G solvation = -15300.821500 eV Core-core repulsion = 13077.461437 eV Total energy + Delta-G solvation = -2223.360063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17573 -34.71215 -32.42544 -31.70267 -29.15980 -26.94847 -25.92027 -24.75282 -22.77442 -21.40691 -19.41167 -17.73851 -16.03721 -15.60528 -14.95847 -14.41437 -13.94239 -13.53602 -13.15186 -12.57292 -12.36993 -12.21337 -12.10119 -11.77039 -11.39778 -11.05638 -11.00481 -10.91177 -10.64790 -10.33034 -10.18707 -10.14606 -10.01807 -9.91287 -9.59409 -9.23037 -8.79479 -8.34181 -6.99268 -5.95743 -3.99905 3.34757 3.38949 3.42109 4.44749 4.96629 5.19015 5.34543 5.36214 5.43097 5.61516 5.87248 5.90289 5.93777 6.09108 6.12445 6.21141 6.24612 6.28803 6.33907 6.44484 6.51762 6.59814 6.66122 6.77566 6.86504 6.93381 7.03157 7.18820 7.25417 7.61738 7.83845 7.88988 8.35276 8.42359 8.70732 9.07178 9.64746 11.10473 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036214 B = 0.010517 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.997508 B = 2661.821970 C = 3111.939007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.048 3.952 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.086 4.086 17 H 0.071 0.929 18 C -0.145 4.145 19 C 0.095 3.905 20 H 0.089 0.911 21 C -0.184 4.184 22 H 0.087 0.913 23 H 0.007 0.993 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -1.952 -9.618 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.251 5.251 13 C -0.080 4.080 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.105 4.105 17 H 0.090 0.910 18 C -0.203 4.203 19 C -0.014 4.014 20 H 0.107 0.893 21 C -0.242 4.242 22 H 0.105 0.895 23 H 0.026 0.974 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.243 -2.322 -9.428 10.596 hybrid contribution 0.519 0.477 0.832 1.091 sum 4.762 -1.844 -8.596 9.998 Atomic orbital electron populations 1.21887 0.98078 0.98560 1.00915 1.19243 0.91950 0.92309 0.86001 0.97964 1.21102 1.30609 1.12064 0.89772 0.92133 1.24921 0.95353 0.95131 0.98923 1.69880 1.37076 1.23137 1.23366 0.86622 0.79066 0.79798 0.82269 1.20399 1.21445 1.20278 1.62242 1.04985 1.55706 1.02182 1.22069 0.99753 0.95318 0.90906 1.21574 0.95510 1.00974 0.97186 1.21637 0.95884 1.00460 0.97061 1.21196 0.94145 1.00185 0.94966 0.91032 1.21848 0.96041 1.01358 1.01036 1.21495 0.89092 0.93081 0.97691 0.89331 1.22487 1.00407 0.99949 1.01384 0.89463 0.97401 0.94910 0.93035 0.91177 0.95978 0.91698 0.92882 0.93054 0.92451 0.92772 0.93463 0.92773 0.91860 0.93327 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.38 37.16 0.31 -3.07 16 2 C 0.21 5.35 1.84 -68.87 -0.13 5.22 16 3 H 0.00 0.08 6.28 -51.93 -0.33 -0.25 16 4 C -0.50 -13.66 7.86 -34.44 -0.27 -13.93 16 5 H 0.06 1.67 6.84 -52.49 -0.36 1.31 16 6 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 7 N -0.89 -25.67 11.29 55.43 0.63 -25.04 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.53 -11.43 4.46 -220.14 -0.98 -12.42 16 13 C 0.05 0.90 4.79 -3.83 -0.02 0.89 16 14 C -0.11 -1.78 6.09 -26.65 -0.16 -1.94 16 15 C -0.11 -1.65 4.98 -26.61 -0.13 -1.78 16 16 C -0.09 -1.38 2.66 -90.54 -0.24 -1.62 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.15 -1.98 8.82 37.15 0.33 -1.65 16 19 C 0.10 1.87 2.27 -67.72 -0.15 1.71 16 20 H 0.09 1.94 6.42 -51.93 -0.33 1.61 16 21 C -0.18 -3.40 7.74 37.16 0.29 -3.11 16 22 H 0.09 2.37 5.92 -51.93 -0.31 2.07 16 23 H 0.01 0.16 6.60 -51.93 -0.34 -0.18 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.07 1.35 6.01 -51.93 -0.31 1.03 16 27 H 0.02 0.42 6.30 -51.93 -0.33 0.10 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.83 6.45 -51.93 -0.34 0.50 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.72 6.52 -51.93 -0.34 0.38 16 35 H 0.06 1.35 6.30 -51.93 -0.33 1.02 16 36 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 37 H 0.05 0.84 4.83 -51.93 -0.25 0.59 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -27.88 267.81 -7.62 -35.49 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.00 Total: -0.77 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.27 Total: -17.78 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.36 Total: -37.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.88 -7.62 -35.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.583 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds