Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47191 * 2 1 4 4 C 1.50695 * 109.47203 * 120.00102 * 2 1 3 5 5 H 1.08001 * 120.00149 * 119.99774 * 4 2 1 6 6 C 1.37876 * 119.99954 * 299.99994 * 4 2 1 7 7 N 1.31514 * 120.00001 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47094 * 60.00117 * 8 6 4 10 10 H 1.48500 * 109.47556 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47086 * 300.00330 * 8 6 4 12 12 N 1.46902 * 109.47119 * 240.00103 * 2 1 3 13 13 C 1.46842 * 110.99811 * 53.87282 * 12 2 1 14 14 C 1.53040 * 109.52137 * 185.83955 * 13 12 2 15 15 C 1.53121 * 109.27641 * 300.81581 * 14 13 12 16 16 C 1.53121 * 109.16103 * 57.65865 * 15 14 13 17 17 H 1.09001 * 109.50379 * 62.27982 * 16 15 14 18 18 C 1.52991 * 109.50540 * 182.40277 * 16 15 14 19 19 C 1.46847 * 110.99681 * 178.07784 * 12 2 1 20 20 H 1.09003 * 109.46583 * 54.16153 * 19 12 2 21 21 C 1.52997 * 109.46699 * 294.17687 * 19 12 2 22 22 H 1.08996 * 109.47367 * 293.48364 * 1 2 3 23 23 H 1.09003 * 109.47063 * 53.49189 * 1 2 3 24 24 H 1.09006 * 109.47048 * 173.48587 * 1 2 3 25 25 H 0.97002 * 119.99750 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.46480 * 305.85096 * 13 12 2 27 27 H 1.09000 * 109.46984 * 65.83482 * 13 12 2 28 28 H 1.09002 * 109.50727 * 60.76211 * 14 13 12 29 29 H 1.09003 * 109.50704 * 180.87897 * 14 13 12 30 30 H 1.09001 * 109.51916 * 177.55716 * 15 14 13 31 31 H 1.08993 * 109.52717 * 297.74753 * 15 14 13 32 32 H 1.09005 * 109.47397 * 179.80069 * 18 16 15 33 33 H 1.09003 * 109.47560 * 299.79953 * 18 16 15 34 34 H 1.09004 * 109.47626 * 59.80106 * 18 16 15 35 35 H 1.08997 * 109.46898 * 55.29196 * 21 19 12 36 36 H 1.09004 * 109.47353 * 175.29333 * 21 19 12 37 37 H 1.09004 * 109.46764 * 295.29436 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0082 10 1 1.8260 -0.4207 5.2205 11 1 1.8258 -2.5203 4.0077 12 7 2.0197 -0.6925 -1.1995 13 6 1.4330 -0.1163 -2.4161 14 6 1.8493 -0.9509 -3.6294 15 6 3.3769 -0.9641 -3.7338 16 6 3.9646 -1.5236 -2.4352 17 1 3.6323 -2.5528 -2.2991 18 6 5.4923 -1.4846 -2.5075 19 6 3.4869 -0.6723 -1.2565 20 1 3.8921 -1.0768 -0.3290 21 6 3.9704 0.7678 -1.4388 22 1 -0.3634 0.4095 0.9425 23 1 -0.3633 0.6114 -0.8260 24 1 -0.3633 -1.0211 -0.1166 25 1 0.7087 1.1612 3.4844 26 1 0.3465 -0.1166 -2.3307 27 1 1.7872 0.9070 -2.5407 28 1 1.4837 -1.9711 -3.5121 29 1 1.4266 -0.5140 -4.5341 30 1 3.6793 -1.5931 -4.5711 31 1 3.7402 0.0515 -3.8901 32 1 5.9101 -1.8798 -1.5814 33 1 5.8320 -2.0911 -3.3471 34 1 5.8235 -0.4553 -2.6453 35 1 3.5617 1.3915 -0.6438 36 1 5.0593 0.7935 -1.3975 37 1 3.6344 1.1442 -2.4051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050564802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = -27.595154 kcal Electronic energy + Delta-G solvation = -15301.545067 eV Core-core repulsion = 13077.461437 eV Total energy + Delta-G solvation = -2224.083630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69152 -36.45679 -34.21199 -33.18554 -30.91971 -28.50982 -27.67096 -26.45088 -24.33433 -22.86018 -21.16462 -19.20164 -18.13951 -17.32236 -16.42959 -16.23414 -15.48189 -14.94817 -14.81188 -14.09673 -14.03307 -13.64569 -13.50776 -13.31633 -12.96248 -12.83788 -12.71275 -12.47985 -12.45525 -12.07287 -11.98650 -11.89132 -11.51410 -11.42550 -11.10322 -10.73753 -10.72269 -10.43660 -8.74936 -8.08847 -6.20180 1.40978 1.42809 1.50258 2.42732 3.17976 3.41373 3.90889 4.07142 4.13993 4.30190 4.50788 4.57461 4.60854 4.70851 4.75235 4.81032 4.91224 4.98049 4.98559 5.05458 5.07919 5.09198 5.18385 5.21175 5.34694 5.34922 5.44912 5.52318 5.59816 5.68099 5.81557 5.86954 6.32786 6.55063 6.86854 6.96588 7.48681 8.96224 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036214 B = 0.010517 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.997508 B = 2661.821970 C = 3111.939007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.511 4.511 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.536 5.536 13 C 0.045 3.955 14 C -0.109 4.109 15 C -0.108 4.108 16 C -0.081 4.081 17 H 0.062 0.938 18 C -0.140 4.140 19 C 0.092 3.908 20 H 0.055 0.945 21 C -0.172 4.172 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -2.794 -11.230 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.109 3.891 3 H -0.013 1.013 4 C -0.549 4.549 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.260 5.260 13 C -0.083 4.083 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.100 4.100 17 H 0.080 0.920 18 C -0.198 4.198 19 C -0.017 4.017 20 H 0.074 0.926 21 C -0.231 4.231 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.304 -3.171 -11.058 12.667 hybrid contribution 0.181 0.756 1.306 1.520 sum 5.485 -2.416 -9.752 11.446 Atomic orbital electron populations 1.21713 0.97899 0.98475 1.00242 1.19014 0.92046 0.90645 0.87400 1.01278 1.21347 1.30593 1.11930 0.91077 0.92921 1.25683 0.95541 0.95832 1.01774 1.70009 1.37928 1.24285 1.23935 0.85643 0.78705 0.78731 0.78741 1.19764 1.20937 1.19787 1.62190 1.06556 1.55275 1.02015 1.22169 0.99178 0.95835 0.91113 1.21555 0.96575 1.00185 0.96316 1.21635 0.94800 1.01275 0.96872 1.21151 0.96001 0.98747 0.94109 0.91966 1.21809 0.93864 1.02238 1.01876 1.21536 0.87767 0.94270 0.98155 0.92640 1.22366 1.01535 0.98546 1.00649 0.92056 0.95501 0.95081 0.93044 0.91984 0.96363 0.92011 0.90074 0.90107 0.91919 0.93364 0.90934 0.92220 0.95656 0.91227 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 8.38 71.98 0.60 -5.76 16 2 C 0.22 11.29 1.84 44.17 0.08 11.37 16 3 H -0.03 -1.75 6.28 -2.39 -0.01 -1.76 16 4 C -0.51 -28.88 7.86 25.60 0.20 -28.68 16 5 H 0.05 2.99 6.84 -2.91 -0.02 2.97 16 6 C 0.01 0.55 5.29 84.65 0.45 1.00 16 7 N -0.92 -54.18 11.29 21.45 0.24 -53.94 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.54 -23.44 4.46 -850.40 -3.80 -27.24 16 13 C 0.05 1.66 4.79 86.33 0.41 2.07 16 14 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 15 C -0.11 -2.76 4.98 30.67 0.15 -2.61 16 16 C -0.08 -2.43 2.66 -10.74 -0.03 -2.46 16 17 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.14 -3.41 8.82 71.98 0.64 -2.78 16 19 C 0.09 3.57 2.27 44.94 0.10 3.68 16 20 H 0.06 2.50 6.42 -2.39 -0.02 2.49 16 21 C -0.17 -6.33 7.74 71.98 0.56 -5.77 16 22 H 0.06 3.43 5.92 -2.39 -0.01 3.42 16 23 H 0.03 1.21 6.60 -2.39 -0.02 1.19 16 24 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.06 2.34 6.01 -2.39 -0.01 2.33 16 27 H 0.02 0.68 6.30 -2.39 -0.02 0.67 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.56 6.45 -2.39 -0.02 1.54 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.38 6.52 -2.38 -0.02 1.37 16 35 H 0.02 1.09 6.30 -2.39 -0.02 1.08 16 36 H 0.07 2.21 6.68 -2.39 -0.02 2.19 16 37 H 0.06 2.11 4.83 -2.38 -0.01 2.10 16 Total: -1.00 -61.06 267.81 2.86 -58.20 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.03 Total: 9.07 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.35 Total: -32.80 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.55 Total: -81.18 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.06 2.86 -58.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.610 kcal (2) G-P(sol) polarization free energy of solvation -61.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds