Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47040 * 2 1 4 4 C 1.50698 * 109.47672 * 120.00143 * 2 1 3 5 5 H 1.08000 * 120.00056 * 119.99857 * 4 2 1 6 6 C 1.37878 * 120.00099 * 299.72865 * 4 2 1 7 7 N 1.31521 * 119.99627 * 0.27005 * 6 4 2 8 8 Si 1.86796 * 120.00395 * 180.27171 * 6 4 2 9 9 H 1.48507 * 109.46900 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47278 * 119.99452 * 8 6 4 11 11 H 1.48493 * 109.47171 * 239.99781 * 8 6 4 12 12 N 1.46908 * 109.46975 * 240.00331 * 2 1 3 13 13 C 1.46846 * 110.99845 * 298.10841 * 12 2 1 14 14 C 1.53041 * 109.52285 * 174.16202 * 13 12 2 15 15 C 1.53118 * 109.27558 * 59.17843 * 14 13 12 16 16 H 1.09000 * 109.52518 * 62.25599 * 15 14 13 17 17 C 1.53003 * 109.57163 * 182.41019 * 15 14 13 18 18 C 1.53116 * 109.16398 * 302.34387 * 15 14 13 19 19 C 1.46848 * 110.99816 * 173.89790 * 12 2 1 20 20 H 1.09002 * 109.46011 * 65.82418 * 19 12 2 21 21 C 1.52990 * 109.46365 * 305.85581 * 19 12 2 22 22 H 1.08997 * 109.47237 * 66.75957 * 1 2 3 23 23 H 1.08999 * 109.46631 * 186.76425 * 1 2 3 24 24 H 1.08998 * 109.46824 * 306.76399 * 1 2 3 25 25 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.46077 * 294.18026 * 13 12 2 27 27 H 1.08997 * 109.46202 * 54.14596 * 13 12 2 28 28 H 1.09007 * 109.49740 * 299.23800 * 14 13 12 29 29 H 1.09002 * 109.53570 * 179.14063 * 14 13 12 30 30 H 1.08994 * 109.47256 * 179.71818 * 17 15 14 31 31 H 1.09001 * 109.47217 * 299.71614 * 17 15 14 32 32 H 1.09000 * 109.47142 * 59.71548 * 17 15 14 33 33 H 1.08999 * 109.50414 * 297.72148 * 18 15 14 34 34 H 1.08999 * 109.50360 * 177.59588 * 18 15 14 35 35 H 1.08999 * 109.47642 * 66.74554 * 21 19 12 36 36 H 1.09008 * 109.47014 * 186.74749 * 21 19 12 37 37 H 1.09001 * 109.47370 * 306.73898 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.7041 -0.2362 2.4827 7 7 0.9479 0.8332 2.6034 8 14 2.3331 -1.1122 4.0078 9 1 3.1567 -2.2801 3.6036 10 1 3.1610 -0.1763 4.8104 11 1 1.1816 -1.5772 4.8219 12 7 2.0197 -0.6925 -1.1995 13 6 1.5861 -2.0954 -1.2111 14 6 1.9880 -2.7440 -2.5377 15 6 3.5079 -2.6586 -2.7021 16 1 3.9929 -3.2159 -1.9007 17 6 3.9114 -3.2514 -4.0537 18 6 3.9387 -1.1907 -2.6381 19 6 3.4803 -0.5871 -1.3086 20 1 3.9459 -1.1278 -0.4845 21 6 3.8911 0.8854 -1.2486 22 1 -0.3633 0.4055 -0.9442 23 1 -0.3632 -1.0205 0.1210 24 1 -0.3633 0.6151 0.8233 25 1 0.7172 1.1671 3.4844 26 1 2.0605 -2.6289 -0.3875 27 1 0.5030 -2.1417 -1.0976 28 1 1.5028 -2.2194 -3.3609 29 1 1.6798 -3.7895 -2.5404 30 1 4.9929 -3.1852 -4.1712 31 1 3.6043 -4.2963 -4.0985 32 1 3.4242 -2.6950 -4.8545 33 1 3.4843 -0.6418 -3.4628 34 1 5.0243 -1.1265 -2.7117 35 1 3.6735 1.2833 -0.2574 36 1 4.9590 0.9731 -1.4490 37 1 3.3336 1.4489 -1.9968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051731934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -18.604035 kcal Electronic energy + Delta-G solvation = -15212.408495 eV Core-core repulsion = 12988.714748 eV Total energy + Delta-G solvation = -2223.693746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.77387 -34.93646 -32.52680 -31.60513 -29.27325 -26.43117 -26.10794 -25.06601 -22.37053 -20.62634 -19.54283 -18.83920 -16.06132 -15.24971 -14.52054 -14.29534 -13.90709 -13.75982 -13.24417 -12.79625 -12.37517 -11.96882 -11.76088 -11.48242 -11.31475 -11.16714 -11.01256 -10.97863 -10.63174 -10.36560 -10.24303 -10.13006 -10.05607 -9.92644 -9.53540 -9.26571 -8.95911 -8.33588 -7.02009 -5.95198 -4.06943 3.26970 3.35609 3.39035 4.42543 5.02618 5.20413 5.28420 5.31339 5.33442 5.82740 5.86761 5.94627 6.00238 6.06264 6.15809 6.20489 6.32505 6.38215 6.50142 6.53797 6.56996 6.69318 6.76530 6.91797 7.00715 7.03104 7.09036 7.13225 7.30139 7.66447 7.77577 8.05922 8.25124 8.43018 8.54645 9.04256 9.60302 11.05052 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036100 B = 0.009762 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.438770 B = 2867.682596 C = 2933.979237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.202 3.798 3 H 0.046 0.954 4 C -0.537 4.537 5 H 0.055 0.945 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.532 5.532 13 C 0.062 3.938 14 C -0.111 4.111 15 C -0.094 4.094 16 H 0.062 0.938 17 C -0.143 4.143 18 C -0.104 4.104 19 C 0.089 3.911 20 H 0.040 0.960 21 C -0.140 4.140 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.078 0.922 25 H 0.259 0.741 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -4.447 -8.832 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.064 0.936 4 C -0.576 4.576 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.149 4.149 15 C -0.112 4.112 16 H 0.080 0.920 17 C -0.200 4.200 18 C -0.142 4.142 19 C -0.020 4.020 20 H 0.058 0.942 21 C -0.197 4.197 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.662 -4.088 -9.104 10.630 hybrid contribution 0.665 -0.921 1.767 2.101 sum 4.327 -5.009 -7.336 9.881 Atomic orbital electron populations 1.21778 0.98032 0.99752 0.99054 1.19348 0.92049 0.94622 0.84387 0.93649 1.21753 1.31495 1.12624 0.91740 0.92716 1.24905 0.94957 0.94863 0.98785 1.69912 1.36759 1.22785 1.23196 0.86658 0.78698 0.79769 0.83586 1.20016 1.21061 1.21064 1.62469 1.09042 1.12413 1.41786 1.21872 1.00192 0.89979 0.94623 1.21687 0.94852 0.99208 0.99125 1.21164 0.96650 0.96582 0.96830 0.91997 1.21811 1.00543 1.00165 0.97485 1.21705 0.99026 0.94845 0.98647 1.21320 0.89973 0.95684 0.95003 0.94240 1.21808 0.98841 0.96322 1.02766 0.96700 0.95483 0.90342 0.93073 0.94776 0.91410 0.91997 0.92928 0.93287 0.93279 0.92923 0.91906 0.92903 0.91389 0.93996 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.50 37.16 0.32 -2.83 16 2 C 0.20 5.04 1.98 -68.86 -0.14 4.91 16 3 H 0.05 1.23 6.01 -51.93 -0.31 0.92 16 4 C -0.54 -14.46 7.19 -34.44 -0.25 -14.71 16 5 H 0.05 1.50 5.84 -52.49 -0.31 1.20 16 6 C 0.07 1.84 5.31 -17.82 -0.09 1.74 16 7 N -0.89 -25.19 11.41 55.43 0.63 -24.56 16 8 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.46 4.47 -220.14 -0.98 -12.45 16 13 C 0.06 1.24 4.80 -3.83 -0.02 1.22 16 14 C -0.11 -1.80 5.38 -26.65 -0.14 -1.94 16 15 C -0.09 -1.42 2.79 -90.50 -0.25 -1.67 16 16 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 17 C -0.14 -1.75 9.20 37.16 0.34 -1.41 16 18 C -0.10 -1.69 4.66 -26.65 -0.12 -1.81 16 19 C 0.09 1.76 2.12 -67.73 -0.14 1.61 16 20 H 0.04 0.87 7.03 -51.93 -0.37 0.50 16 21 C -0.14 -2.63 8.53 37.15 0.32 -2.32 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.03 0.64 6.67 -51.93 -0.35 0.30 16 24 H 0.08 2.09 6.29 -51.93 -0.33 1.77 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.03 0.75 6.57 -51.93 -0.34 0.41 16 27 H 0.07 1.40 6.21 -51.93 -0.32 1.08 16 28 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.45 6.61 -51.93 -0.34 1.11 16 36 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 276.28 15.07 4.16 4.16 Total: -1.00 -27.44 276.28 -7.84 -35.28 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.45 Total: -1.58 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -0.18 Total: -17.21 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.35 Total: -37.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.44 -7.84 -35.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.679 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds