Wall clock time and date at job start Mon Mar 30 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.78222 * 2 1 4 4 C 1.50822 * 109.74982 * 120.69966 * 2 1 3 5 5 C 1.53810 * 111.62611 * 214.69937 * 4 2 1 6 6 C 1.54169 * 111.97259 * 319.04305 * 5 4 2 7 7 C 1.50753 * 112.60825 * 318.49000 * 6 5 4 8 8 C 1.54431 * 109.02856 * 93.01519 * 7 6 5 9 9 N 1.39775 * 111.77050 * 282.58843 * 8 7 6 10 10 C 1.46901 * 111.00024 * 189.12372 * 9 8 7 11 11 C 1.53000 * 109.46769 * 66.05210 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 H 1.09000 * 109.46555 * 180.69782 * 1 2 3 21 21 H 1.08996 * 109.47358 * 300.69890 * 1 2 3 22 22 H 1.08997 * 109.46878 * 60.70274 * 1 2 3 23 23 H 1.09000 * 109.04683 * 94.14179 * 4 2 1 24 24 H 1.08998 * 109.04441 * 335.25314 * 4 2 1 25 25 H 1.08998 * 108.98253 * 198.39800 * 5 4 2 26 26 H 1.08998 * 108.91844 * 79.63817 * 5 4 2 27 27 H 1.09003 * 108.85918 * 197.68561 * 6 5 4 28 28 H 1.09000 * 108.77283 * 79.23664 * 6 5 4 29 29 H 1.08999 * 109.54705 * 333.15291 * 7 6 5 30 30 H 1.09005 * 109.54699 * 212.88415 * 7 6 5 31 31 H 1.09003 * 109.02106 * 162.00274 * 8 7 6 32 32 H 1.09000 * 109.01774 * 43.18227 * 8 7 6 33 33 H 1.09002 * 109.47401 * 306.04917 * 10 9 8 34 34 H 1.09001 * 109.46874 * 186.04930 * 10 9 8 35 35 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 37 37 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0396 -0.7247 1.2206 5 6 3.3375 -0.0944 1.7533 6 6 4.2952 0.3050 0.6131 7 6 4.3587 -0.7311 -0.4801 8 6 3.3308 -0.3716 -1.5750 9 7 2.0288 -0.7094 -1.1948 10 6 1.0969 -0.5635 -2.3210 11 6 1.4385 -1.5910 -3.4019 12 6 0.4828 -1.4410 -4.5575 13 1 -0.2910 -0.6883 -4.5240 14 6 0.5965 -2.2646 -5.6574 15 7 1.5391 -3.1807 -5.6984 16 14 -0.5885 -2.0790 -7.0895 17 1 -1.5481 -0.9835 -6.7992 18 1 0.1725 -1.7559 -8.3231 19 1 -1.3316 -3.3498 -7.2849 20 1 -0.3632 -1.0276 0.0125 21 1 -0.3634 0.5246 0.8836 22 1 -0.3633 0.5029 -0.8962 23 1 2.2299 -1.7664 0.9622 24 1 1.2791 -0.6862 2.0005 25 1 3.8393 -0.8116 2.4029 26 1 3.0870 0.7938 2.3332 27 1 5.2948 0.4443 1.0249 28 1 3.9565 1.2485 0.1848 29 1 4.1234 -1.7120 -0.0670 30 1 5.3600 -0.7461 -0.9107 31 1 3.5840 -0.9075 -2.4898 32 1 3.3778 0.7001 -1.7682 33 1 1.1816 0.4413 -2.7349 34 1 0.0773 -0.7281 -1.9724 35 1 2.4581 -1.4265 -3.7504 36 1 1.3538 -2.5957 -2.9880 37 1 1.6193 -3.7599 -6.4723 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069944819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:40 Heat of formation + Delta-G solvation = -11.789390 kcal Electronic energy + Delta-G solvation = -14748.049421 eV Core-core repulsion = 12524.651180 eV Total energy + Delta-G solvation = -2223.398241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.36978 -34.83517 -33.15727 -32.65187 -29.62066 -27.86927 -26.00182 -23.92385 -22.91697 -21.07429 -19.39124 -18.94414 -16.49314 -15.35737 -15.29818 -14.67428 -14.49306 -14.20917 -13.47042 -12.97052 -12.77837 -12.33289 -12.18430 -11.98209 -11.65504 -11.28211 -11.08786 -10.93995 -10.83543 -10.51156 -10.40120 -10.31310 -10.00373 -9.97887 -9.65443 -9.22627 -9.02524 -8.28680 -7.44536 -5.96392 -3.98379 3.32898 3.40226 3.44228 4.41559 4.58209 4.98732 5.01914 5.14956 5.36220 5.39360 5.40230 5.56639 5.68658 5.74326 5.90256 5.93369 6.04952 6.11324 6.15449 6.26266 6.29653 6.37964 6.39768 6.45880 6.54312 6.66459 6.70986 6.74133 7.08874 7.64138 7.83649 7.90306 8.12964 8.19406 8.49784 9.09501 9.65047 11.15040 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050378 B = 0.007084 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.664116 B = 3951.637013 C = 4306.666521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 H 0.038 0.962 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.119 4.119 8 C 0.074 3.926 9 N -0.550 5.550 10 C 0.058 3.942 11 C 0.026 3.974 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.065 0.935 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.007 0.993 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.016 0.984 36 H 0.024 0.976 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 6.154 12.684 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 H 0.056 0.944 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.056 4.056 9 N -0.275 5.275 10 C -0.068 4.068 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.777 5.575 12.702 14.147 hybrid contribution -0.548 0.888 -1.089 1.508 sum 2.229 6.463 11.613 13.476 Atomic orbital electron populations 1.22102 0.95056 1.02577 1.01281 1.21234 0.94391 0.95087 0.90982 0.94383 1.21490 0.95916 1.01340 0.96376 1.21893 0.96049 0.99932 0.97378 1.21422 0.98547 0.99268 0.96400 1.21498 0.98464 0.99745 0.95951 1.20987 0.88809 0.97334 0.98473 1.58962 1.02629 1.59545 1.06327 1.22491 0.95431 0.98588 0.90254 1.19145 0.96578 0.94125 0.91269 1.21248 1.15157 1.17507 1.01946 0.92813 1.24994 0.95611 0.95299 0.98446 1.69983 1.32702 1.20665 1.29937 0.86562 0.81122 0.77928 0.82534 1.19800 1.21076 1.21001 0.91606 0.93033 0.91898 0.90555 0.92468 0.92579 0.92967 0.92910 0.92726 0.90845 0.92049 0.89802 0.97460 0.96620 0.90937 0.96599 0.95802 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.67 37.16 0.28 -1.93 16 2 C 0.09 1.40 2.47 -68.40 -0.17 1.23 16 3 H 0.04 0.59 6.66 -51.93 -0.35 0.24 16 4 C -0.11 -1.52 4.98 -27.40 -0.14 -1.66 16 5 C -0.11 -1.36 5.91 -25.70 -0.15 -1.51 16 6 C -0.12 -1.50 5.32 -27.25 -0.14 -1.65 16 7 C -0.12 -1.73 5.65 -27.11 -0.15 -1.88 16 8 C 0.07 1.31 4.81 -6.75 -0.03 1.28 16 9 N -0.55 -10.24 3.93 -231.98 -0.91 -11.15 16 10 C 0.06 1.26 4.09 -3.82 -0.02 1.24 16 11 C 0.03 0.69 4.88 -27.88 -0.14 0.56 16 12 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H 0.06 1.00 7.95 -51.93 -0.41 0.58 16 21 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 22 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 23 H 0.08 1.15 7.26 -51.93 -0.38 0.77 16 24 H 0.06 0.68 7.71 -51.93 -0.40 0.28 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 29 H 0.07 1.12 7.11 -51.93 -0.37 0.75 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.70 5.89 -51.93 -0.31 1.40 16 32 H 0.01 0.13 7.54 -51.93 -0.39 -0.26 16 33 H 0.02 0.34 8.11 -51.93 -0.42 -0.08 16 34 H 0.07 1.52 5.32 -51.93 -0.28 1.24 16 35 H 0.02 0.44 6.35 -51.93 -0.33 0.11 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 276.15 15.07 4.16 4.16 Total: -1.00 -29.66 276.15 -8.48 -38.14 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -6.38 Total: -3.57 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.07 Total: -17.97 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.17 Total: -37.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.66 -8.48 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069944819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.352 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds