Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.78222 * 2 1 4 4 C 1.50822 * 109.74982 * 120.69966 * 2 1 3 5 5 C 1.53810 * 111.62611 * 214.69937 * 4 2 1 6 6 C 1.54169 * 111.97259 * 319.04305 * 5 4 2 7 7 C 1.50753 * 112.60825 * 318.49000 * 6 5 4 8 8 C 1.54431 * 109.02856 * 93.01519 * 7 6 5 9 9 N 1.39775 * 111.77050 * 282.58843 * 8 7 6 10 10 C 1.46901 * 111.00024 * 189.12372 * 9 8 7 11 11 C 1.53000 * 109.46769 * 66.05210 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 H 1.09000 * 109.46555 * 180.69782 * 1 2 3 21 21 H 1.08996 * 109.47358 * 300.69890 * 1 2 3 22 22 H 1.08997 * 109.46878 * 60.70274 * 1 2 3 23 23 H 1.09000 * 109.04683 * 94.14179 * 4 2 1 24 24 H 1.08998 * 109.04441 * 335.25314 * 4 2 1 25 25 H 1.08998 * 108.98253 * 198.39800 * 5 4 2 26 26 H 1.08998 * 108.91844 * 79.63817 * 5 4 2 27 27 H 1.09003 * 108.85918 * 197.68561 * 6 5 4 28 28 H 1.09000 * 108.77283 * 79.23664 * 6 5 4 29 29 H 1.08999 * 109.54705 * 333.15291 * 7 6 5 30 30 H 1.09005 * 109.54699 * 212.88415 * 7 6 5 31 31 H 1.09003 * 109.02106 * 162.00274 * 8 7 6 32 32 H 1.09000 * 109.01774 * 43.18227 * 8 7 6 33 33 H 1.09002 * 109.47401 * 306.04917 * 10 9 8 34 34 H 1.09001 * 109.46874 * 186.04930 * 10 9 8 35 35 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 37 37 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0396 -0.7247 1.2206 5 6 3.3375 -0.0944 1.7533 6 6 4.2952 0.3050 0.6131 7 6 4.3587 -0.7311 -0.4801 8 6 3.3308 -0.3716 -1.5750 9 7 2.0288 -0.7094 -1.1948 10 6 1.0969 -0.5635 -2.3210 11 6 1.4385 -1.5910 -3.4019 12 6 0.4828 -1.4410 -4.5575 13 1 -0.2910 -0.6883 -4.5240 14 6 0.5965 -2.2646 -5.6574 15 7 1.5391 -3.1807 -5.6984 16 14 -0.5885 -2.0790 -7.0895 17 1 -1.5481 -0.9835 -6.7992 18 1 0.1725 -1.7559 -8.3231 19 1 -1.3316 -3.3498 -7.2849 20 1 -0.3632 -1.0276 0.0125 21 1 -0.3634 0.5246 0.8836 22 1 -0.3633 0.5029 -0.8962 23 1 2.2299 -1.7664 0.9622 24 1 1.2791 -0.6862 2.0005 25 1 3.8393 -0.8116 2.4029 26 1 3.0870 0.7938 2.3332 27 1 5.2948 0.4443 1.0249 28 1 3.9565 1.2485 0.1848 29 1 4.1234 -1.7120 -0.0670 30 1 5.3600 -0.7461 -0.9107 31 1 3.5840 -0.9075 -2.4898 32 1 3.3778 0.7001 -1.7682 33 1 1.1816 0.4413 -2.7349 34 1 0.0773 -0.7281 -1.9724 35 1 2.4581 -1.4265 -3.7504 36 1 1.3538 -2.5957 -2.9880 37 1 1.6193 -3.7599 -6.4723 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069944819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = -29.470731 kcal Electronic energy + Delta-G solvation = -14748.816142 eV Core-core repulsion = 12524.651180 eV Total energy + Delta-G solvation = -2224.164961 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72337 -36.31813 -34.85451 -34.20422 -31.50668 -29.08100 -27.59142 -25.68100 -24.18097 -22.75086 -20.90735 -20.09100 -18.59488 -16.89045 -16.69530 -16.46647 -15.73937 -15.65216 -14.90631 -14.48782 -14.24156 -14.07609 -13.52158 -13.40283 -13.04568 -12.90690 -12.77790 -12.49860 -12.36166 -12.07946 -11.86032 -11.49425 -11.47332 -11.30093 -11.14290 -11.05727 -11.01287 -10.51790 -8.96054 -8.20086 -6.31510 1.39499 1.40108 1.53502 2.40057 3.10340 3.13163 3.88001 3.90531 4.06289 4.17821 4.24464 4.37180 4.46593 4.53716 4.59623 4.66470 4.78151 4.88457 4.93948 4.98910 5.01928 5.10804 5.16443 5.22580 5.27185 5.33405 5.42941 5.47085 5.52846 5.61073 5.70775 5.81625 6.18500 6.42327 6.72074 6.86836 7.37600 8.92377 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050378 B = 0.007084 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.664116 B = 3951.637013 C = 4306.666521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.089 3.911 3 H 0.044 0.956 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.110 4.110 8 C 0.074 3.926 9 N -0.559 5.559 10 C 0.075 3.925 11 C 0.036 3.964 12 C -0.543 4.543 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.277 1.277 20 H 0.055 0.945 21 H 0.083 0.917 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.010 0.990 34 H 0.080 0.920 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 7.321 13.921 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 H 0.062 0.938 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.148 4.148 8 C -0.056 4.056 9 N -0.284 5.284 10 C -0.052 4.052 11 C -0.002 4.002 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.202 1.202 20 H 0.074 0.926 21 H 0.102 0.898 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.028 0.972 34 H 0.098 0.902 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.158 6.754 13.962 15.659 hybrid contribution -0.317 0.507 -1.453 1.571 sum 1.841 7.261 12.509 14.580 Atomic orbital electron populations 1.22089 0.94272 1.02253 1.02235 1.21405 0.95124 0.95252 0.89995 0.93817 1.21455 0.97576 0.99933 0.95874 1.21890 0.94888 1.00973 0.97169 1.21397 1.00197 0.97921 0.95906 1.21437 0.97647 1.00135 0.95608 1.20969 0.89505 0.96643 0.98476 1.58936 1.02363 1.60860 1.06259 1.22149 0.96524 0.96385 0.90105 1.18969 0.94977 0.93789 0.92455 1.21662 1.15693 1.17859 1.02951 0.92241 1.25982 0.97450 0.94705 1.01606 1.70122 1.34534 1.21542 1.31069 0.85371 0.78710 0.78372 0.78408 1.18527 1.20364 1.20222 0.92586 0.89826 0.93162 0.92519 0.90320 0.91253 0.91074 0.90698 0.93263 0.91606 0.90996 0.93544 0.97531 0.97169 0.90192 0.99170 0.99114 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 7.67 71.98 0.55 -3.58 16 2 C 0.09 2.62 2.47 44.07 0.11 2.72 16 3 H 0.04 1.26 6.66 -2.39 -0.02 1.25 16 4 C -0.11 -2.72 4.98 30.16 0.15 -2.57 16 5 C -0.11 -2.28 5.91 31.26 0.18 -2.09 16 6 C -0.12 -2.66 5.32 30.26 0.16 -2.50 16 7 C -0.11 -3.15 5.65 30.35 0.17 -2.98 16 8 C 0.07 2.71 4.81 88.07 0.42 3.13 16 9 N -0.56 -21.16 3.93 -887.84 -3.49 -24.65 16 10 C 0.08 3.33 4.09 86.30 0.35 3.68 16 11 C 0.04 1.97 4.88 29.85 0.15 2.12 16 12 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 14 C 0.00 0.02 5.46 84.66 0.46 0.48 16 15 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 16 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H 0.06 1.63 7.95 -2.39 -0.02 1.61 16 21 H 0.08 1.75 8.13 -2.39 -0.02 1.73 16 22 H 0.05 1.49 6.38 -2.39 -0.02 1.47 16 23 H 0.06 1.64 7.26 -2.39 -0.02 1.62 16 24 H 0.08 1.62 7.71 -2.39 -0.02 1.60 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.19 6.57 -2.39 -0.02 1.17 16 29 H 0.07 1.98 7.11 -2.39 -0.02 1.96 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.05 2.02 5.89 -2.39 -0.01 2.01 16 32 H 0.01 0.25 7.54 -2.39 -0.02 0.23 16 33 H 0.01 0.46 8.11 -2.39 -0.02 0.44 16 34 H 0.08 3.41 5.32 -2.39 -0.01 3.39 16 35 H -0.01 -0.60 6.35 -2.39 -0.02 -0.61 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -65.22 276.15 2.78 -62.44 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.01 Total: 6.29 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 2.95 Total: -33.25 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -3.20 Total: -82.58 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.22 2.78 -62.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069944819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.970 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds