Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.50702 * 109.47409 * 119.99913 * 2 1 3 5 5 H 1.08006 * 119.99818 * 120.00207 * 4 2 1 6 6 C 1.37871 * 120.00305 * 300.00198 * 4 2 1 7 7 N 1.31523 * 119.99586 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00336 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46975 * 60.00024 * 8 6 4 10 10 H 1.48504 * 109.47192 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47273 * 300.00407 * 8 6 4 12 12 N 1.46899 * 109.47252 * 240.00318 * 2 1 3 13 13 C 1.44276 * 110.99714 * 298.02390 * 12 2 1 14 14 C 1.54064 * 111.97582 * 219.31202 * 13 12 2 15 15 C 1.54294 * 112.28756 * 318.91668 * 14 13 12 16 16 C 1.50468 * 113.03917 * 318.29866 * 15 14 13 17 17 H 1.08999 * 109.66957 * 332.27910 * 16 15 14 18 18 C 1.52997 * 109.57459 * 211.96542 * 16 15 14 19 19 C 1.54507 * 108.85743 * 92.14646 * 16 15 14 20 20 C 1.45865 * 111.59095 * 282.82832 * 19 16 15 21 21 H 1.09004 * 109.46909 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47136 * 299.99273 * 1 2 3 23 23 H 1.08996 * 109.47371 * 60.00240 * 1 2 3 24 24 H 0.96998 * 119.99769 * 179.97438 * 7 6 4 25 25 H 1.08999 * 108.98281 * 339.95277 * 13 12 2 26 26 H 1.09004 * 108.98119 * 98.75386 * 13 12 2 27 27 H 1.09000 * 108.92017 * 79.64063 * 14 13 12 28 28 H 1.09004 * 108.92076 * 198.19674 * 14 13 12 29 29 H 1.09004 * 108.77395 * 197.38267 * 15 14 13 30 30 H 1.08997 * 108.77354 * 79.21924 * 15 14 13 31 31 H 1.09002 * 109.47153 * 300.62298 * 18 16 15 32 32 H 1.09001 * 109.46832 * 180.62489 * 18 16 15 33 33 H 1.09004 * 109.47261 * 60.62470 * 18 16 15 34 34 H 1.09002 * 109.05638 * 43.37212 * 19 16 15 35 35 H 1.09003 * 109.05673 * 162.28111 * 19 16 15 36 36 H 1.08996 * 108.78881 * 182.21085 * 20 19 16 37 37 H 1.08997 * 108.78746 * 300.54930 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8066 -1.1209 4.0080 10 1 1.8261 -0.4206 5.2204 11 1 1.8261 -2.5202 4.0077 12 7 2.0196 -0.6924 -1.1995 13 6 1.5953 -2.0713 -1.2098 14 6 2.6986 -3.0101 -1.7344 15 6 3.4450 -2.4157 -2.9469 16 6 2.5276 -1.7410 -3.9303 17 1 1.5384 -2.1962 -3.8812 18 6 3.0917 -1.8919 -5.3444 19 6 2.4258 -0.2417 -3.5708 20 6 1.5456 -0.0222 -2.4285 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7089 1.1613 3.4844 25 1 1.3301 -2.3683 -0.1952 26 1 0.7169 -2.1672 -1.8481 27 1 3.4152 -3.1951 -0.9342 28 1 2.2465 -3.9576 -2.0276 29 1 3.9784 -3.2173 -3.4579 30 1 4.1720 -1.6869 -2.5884 31 1 4.0826 -1.4401 -5.3905 32 1 2.4316 -1.3931 -6.0540 33 1 3.1628 -2.9501 -5.5963 34 1 3.4202 0.1352 -3.3315 35 1 2.0368 0.3047 -4.4300 36 1 1.4759 1.0490 -2.2398 37 1 0.5530 -0.4007 -2.6724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070158125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -12.904002 kcal Electronic energy + Delta-G solvation = -15102.604420 eV Core-core repulsion = 12879.157846 eV Total energy + Delta-G solvation = -2223.446574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88674 -35.44064 -32.55881 -31.91505 -29.59156 -27.13027 -25.22110 -24.84757 -22.77682 -21.21174 -19.37485 -18.42249 -16.09190 -15.39682 -14.89332 -14.22956 -14.12375 -13.86102 -13.15242 -12.81119 -12.69965 -12.33505 -11.98913 -11.60991 -11.24984 -11.10849 -11.02484 -10.76316 -10.50561 -10.47121 -10.23500 -10.12887 -10.00797 -9.87648 -9.61733 -9.45462 -8.79836 -8.36161 -7.08384 -5.98778 -4.02089 3.33767 3.37987 3.41092 4.43144 4.95205 5.07671 5.26563 5.32813 5.39249 5.72956 5.81560 5.87000 5.88586 5.97701 6.07038 6.14007 6.19972 6.29932 6.42987 6.51836 6.69755 6.70429 6.75937 6.77322 6.88405 6.90399 6.93489 7.00061 7.21820 7.57459 7.78198 7.89231 8.21582 8.50814 8.66891 9.05015 9.62630 11.08310 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047132 B = 0.008825 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.934520 B = 3172.220749 C = 3531.862630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.521 5.521 13 C 0.060 3.940 14 C -0.108 4.108 15 C -0.101 4.101 16 C -0.088 4.088 17 H 0.063 0.937 18 C -0.143 4.143 19 C -0.104 4.104 20 C 0.054 3.946 21 H 0.026 0.974 22 H 0.086 0.914 23 H 0.007 0.993 24 H 0.260 0.740 25 H 0.081 0.919 26 H 0.017 0.983 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -4.343 -10.667 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.244 5.244 13 C -0.069 4.069 14 C -0.147 4.147 15 C -0.138 4.138 16 C -0.106 4.106 17 H 0.081 0.919 18 C -0.200 4.200 19 C -0.142 4.142 20 C -0.074 4.074 21 H 0.045 0.955 22 H 0.105 0.895 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.203 -4.197 -10.500 11.521 hybrid contribution -0.671 -0.422 0.880 1.184 sum 1.532 -4.620 -9.621 10.782 Atomic orbital electron populations 1.22434 1.00908 0.99142 1.00485 1.19391 0.89606 0.94616 0.85941 0.94359 1.21107 1.30588 1.12474 0.89774 0.91930 1.24923 0.95239 0.95119 0.98955 1.69885 1.37025 1.23024 1.23447 0.86604 0.79247 0.79609 0.82200 1.20240 1.21410 1.20394 1.61851 1.59208 1.01505 1.01840 1.21795 0.93984 0.90027 1.01089 1.21956 0.98535 0.97074 0.97093 1.21217 0.98274 0.99178 0.95157 1.20892 0.99455 0.96253 0.94003 0.91889 1.21878 1.00753 1.00801 0.96605 1.20661 1.01176 0.95355 0.97030 1.20886 0.95713 0.99085 0.91737 0.95491 0.89517 0.97354 0.92989 0.90022 0.96486 0.92344 0.93725 0.93929 0.91616 0.92952 0.93284 0.93262 0.91700 0.92966 0.92401 0.95929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.41 37.16 0.31 -3.85 16 2 C 0.21 5.33 2.26 -68.87 -0.16 5.17 16 3 H 0.04 1.07 8.05 -51.93 -0.42 0.65 16 4 C -0.50 -13.70 7.40 -34.44 -0.25 -13.95 16 5 H 0.06 1.71 7.08 -52.48 -0.37 1.34 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.52 -11.23 4.26 -232.94 -0.99 -12.22 16 13 C 0.06 1.21 3.59 -4.67 -0.02 1.20 16 14 C -0.11 -1.85 6.15 -25.50 -0.16 -2.01 16 15 C -0.10 -1.55 4.98 -27.32 -0.14 -1.69 16 16 C -0.09 -1.26 2.39 -91.09 -0.22 -1.48 16 17 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16 18 C -0.14 -1.68 8.90 37.16 0.33 -1.35 16 19 C -0.10 -1.62 4.92 -29.32 -0.14 -1.77 16 20 C 0.05 1.00 3.76 -6.71 -0.03 0.98 16 21 H 0.03 0.63 7.01 -51.93 -0.36 0.27 16 22 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 23 H 0.01 0.17 6.99 -51.93 -0.36 -0.19 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.08 1.84 5.65 -51.93 -0.29 1.55 16 26 H 0.02 0.33 6.50 -51.93 -0.34 -0.01 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 30 H 0.07 1.11 7.38 -51.93 -0.38 0.73 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.06 1.05 7.59 -51.93 -0.39 0.65 16 35 H 0.05 0.71 8.02 -51.93 -0.42 0.30 16 36 H 0.06 1.11 7.73 -51.93 -0.40 0.71 16 37 H 0.02 0.42 6.86 -51.93 -0.36 0.06 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -27.52 273.26 -8.26 -35.78 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.43 Total: -1.91 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -0.56 Total: -17.22 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.36 Total: -37.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.52 -8.26 -35.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.878 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds