Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.50702 * 109.47409 * 119.99913 * 2 1 3 5 5 H 1.08006 * 119.99818 * 120.00207 * 4 2 1 6 6 C 1.37871 * 120.00305 * 300.00198 * 4 2 1 7 7 N 1.31523 * 119.99586 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00336 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46975 * 60.00024 * 8 6 4 10 10 H 1.48504 * 109.47192 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47273 * 300.00407 * 8 6 4 12 12 N 1.46899 * 109.47252 * 240.00318 * 2 1 3 13 13 C 1.44276 * 110.99714 * 298.02390 * 12 2 1 14 14 C 1.54064 * 111.97582 * 219.31202 * 13 12 2 15 15 C 1.54294 * 112.28756 * 318.91668 * 14 13 12 16 16 C 1.50468 * 113.03917 * 318.29866 * 15 14 13 17 17 H 1.08999 * 109.66957 * 332.27910 * 16 15 14 18 18 C 1.52997 * 109.57459 * 211.96542 * 16 15 14 19 19 C 1.54507 * 108.85743 * 92.14646 * 16 15 14 20 20 C 1.45865 * 111.59095 * 282.82832 * 19 16 15 21 21 H 1.09004 * 109.46909 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47136 * 299.99273 * 1 2 3 23 23 H 1.08996 * 109.47371 * 60.00240 * 1 2 3 24 24 H 0.96998 * 119.99769 * 179.97438 * 7 6 4 25 25 H 1.08999 * 108.98281 * 339.95277 * 13 12 2 26 26 H 1.09004 * 108.98119 * 98.75386 * 13 12 2 27 27 H 1.09000 * 108.92017 * 79.64063 * 14 13 12 28 28 H 1.09004 * 108.92076 * 198.19674 * 14 13 12 29 29 H 1.09004 * 108.77395 * 197.38267 * 15 14 13 30 30 H 1.08997 * 108.77354 * 79.21924 * 15 14 13 31 31 H 1.09002 * 109.47153 * 300.62298 * 18 16 15 32 32 H 1.09001 * 109.46832 * 180.62489 * 18 16 15 33 33 H 1.09004 * 109.47261 * 60.62470 * 18 16 15 34 34 H 1.09002 * 109.05638 * 43.37212 * 19 16 15 35 35 H 1.09003 * 109.05673 * 162.28111 * 19 16 15 36 36 H 1.08996 * 108.78881 * 182.21085 * 20 19 16 37 37 H 1.08997 * 108.78746 * 300.54930 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8066 -1.1209 4.0080 10 1 1.8261 -0.4206 5.2204 11 1 1.8261 -2.5202 4.0077 12 7 2.0196 -0.6924 -1.1995 13 6 1.5953 -2.0713 -1.2098 14 6 2.6986 -3.0101 -1.7344 15 6 3.4450 -2.4157 -2.9469 16 6 2.5276 -1.7410 -3.9303 17 1 1.5384 -2.1962 -3.8812 18 6 3.0917 -1.8919 -5.3444 19 6 2.4258 -0.2417 -3.5708 20 6 1.5456 -0.0222 -2.4285 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7089 1.1613 3.4844 25 1 1.3301 -2.3683 -0.1952 26 1 0.7169 -2.1672 -1.8481 27 1 3.4152 -3.1951 -0.9342 28 1 2.2465 -3.9576 -2.0276 29 1 3.9784 -3.2173 -3.4579 30 1 4.1720 -1.6869 -2.5884 31 1 4.0826 -1.4401 -5.3905 32 1 2.4316 -1.3931 -6.0540 33 1 3.1628 -2.9501 -5.5963 34 1 3.4202 0.1352 -3.3315 35 1 2.0368 0.3047 -4.4300 36 1 1.4759 1.0490 -2.2398 37 1 0.5530 -0.4007 -2.6724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070158125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -28.738438 kcal Electronic energy + Delta-G solvation = -15103.291053 eV Core-core repulsion = 12879.157846 eV Total energy + Delta-G solvation = -2224.133207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41335 -37.00649 -34.49463 -33.31920 -31.28595 -28.59066 -27.30458 -26.36647 -24.08013 -22.97114 -20.73846 -20.04031 -18.13023 -17.18078 -16.44454 -15.95064 -15.46172 -15.35103 -14.72249 -14.33594 -14.07008 -13.87226 -13.62150 -13.18595 -12.90668 -12.71193 -12.68765 -12.31888 -12.29498 -12.18490 -12.06626 -11.75007 -11.30966 -11.22204 -11.16562 -10.89622 -10.81544 -10.48958 -8.81619 -8.10996 -6.21217 1.41939 1.43410 1.51047 2.42556 3.17850 3.39008 3.83827 4.11304 4.16642 4.40366 4.47057 4.49145 4.57099 4.72121 4.77970 4.82129 4.89281 4.90506 4.99660 5.06700 5.11288 5.19183 5.24956 5.33795 5.41083 5.44111 5.54981 5.56586 5.62169 5.69989 5.74637 5.82567 6.22559 6.59111 6.81124 6.96182 7.47748 8.95288 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047132 B = 0.008825 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.934520 B = 3172.220749 C = 3531.862630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.528 5.528 13 C 0.064 3.936 14 C -0.105 4.105 15 C -0.097 4.097 16 C -0.085 4.085 17 H 0.059 0.941 18 C -0.137 4.137 19 C -0.102 4.102 20 C 0.056 3.944 21 H 0.027 0.973 22 H 0.060 0.940 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 -5.614 -12.077 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.251 5.251 13 C -0.066 4.066 14 C -0.144 4.144 15 C -0.134 4.134 16 C -0.103 4.103 17 H 0.078 0.922 18 C -0.194 4.194 19 C -0.140 4.140 20 C -0.072 4.072 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.662 -5.478 -11.929 13.394 hybrid contribution -0.833 -0.007 1.287 1.533 sum 1.829 -5.485 -10.642 12.112 Atomic orbital electron populations 1.22225 1.00390 0.98878 0.99965 1.19147 0.89865 0.92928 0.87313 0.97892 1.21353 1.30583 1.12399 0.90952 0.92510 1.25689 0.95419 0.95806 1.01816 1.70014 1.37905 1.24186 1.24041 0.85617 0.78714 0.78698 0.78642 1.19849 1.20952 1.19649 1.61837 1.59383 1.02260 1.01659 1.21775 0.95577 0.89535 0.99671 1.21924 0.97499 0.97379 0.97549 1.21198 0.97990 0.99507 0.94751 1.20868 0.99193 0.94783 0.95471 0.92234 1.21815 1.00998 1.01932 0.94657 1.20634 1.00007 0.96963 0.96378 1.20975 0.96676 0.98034 0.91501 0.95431 0.92136 0.95634 0.92983 0.93053 0.95722 0.93680 0.91349 0.91511 0.93507 0.92568 0.92102 0.91992 0.92500 0.90468 0.93660 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 8.41 71.98 0.61 -7.12 16 2 C 0.21 11.16 2.26 44.17 0.10 11.26 16 3 H 0.00 0.18 8.05 -2.39 -0.02 0.17 16 4 C -0.51 -28.74 7.40 25.60 0.19 -28.55 16 5 H 0.06 3.17 7.08 -2.91 -0.02 3.15 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.77 11.32 21.45 0.24 -53.53 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.53 -22.93 4.26 -890.90 -3.79 -26.72 16 13 C 0.06 2.53 3.59 87.15 0.31 2.84 16 14 C -0.11 -3.45 6.15 31.39 0.19 -3.26 16 15 C -0.10 -2.77 4.98 30.21 0.15 -2.62 16 16 C -0.08 -2.20 2.39 -11.10 -0.03 -2.22 16 17 H 0.06 1.61 7.16 -2.39 -0.02 1.60 16 18 C -0.14 -2.69 8.90 71.98 0.64 -2.05 16 19 C -0.10 -2.97 4.92 28.92 0.14 -2.83 16 20 C 0.06 2.04 3.76 83.94 0.32 2.36 16 21 H 0.03 1.31 7.01 -2.39 -0.02 1.30 16 22 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 23 H 0.02 1.13 6.99 -2.39 -0.02 1.11 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.05 2.34 5.65 -2.39 -0.01 2.33 16 26 H 0.02 0.93 6.50 -2.38 -0.02 0.91 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.07 1.60 7.69 -2.39 -0.02 1.58 16 30 H 0.05 1.52 7.38 -2.39 -0.02 1.50 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.08 8.10 -2.38 -0.02 1.06 16 34 H 0.06 1.76 7.59 -2.39 -0.02 1.74 16 35 H 0.08 1.89 8.02 -2.39 -0.02 1.87 16 36 H 0.04 1.74 7.73 -2.39 -0.02 1.72 16 37 H 0.02 0.90 6.86 -2.39 -0.02 0.88 16 Total: -1.00 -59.37 273.26 2.56 -56.80 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.01 Total: 8.26 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.07 Total: -31.12 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.55 Total: -80.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.37 2.56 -56.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.066 kcal (2) G-P(sol) polarization free energy of solvation -59.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds