Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47242 * 2 1 4 4 C 1.53004 * 109.46826 * 240.00575 * 2 1 3 5 5 C 1.52997 * 109.47024 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47504 * 59.99687 * 5 4 2 7 7 C 1.53004 * 109.47236 * 300.00184 * 6 5 4 8 8 H 1.09004 * 109.46741 * 300.00111 * 7 6 5 9 9 C 1.52997 * 109.47236 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47060 * 65.00086 * 9 7 6 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.36936 * 120.00002 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00140 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00175 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00164 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47433 * 89.99724 * 16 14 12 18 18 H 1.48495 * 109.47040 * 209.99943 * 16 14 12 19 19 H 1.48501 * 109.47069 * 329.99442 * 16 14 12 20 20 C 1.52997 * 109.47024 * 59.99522 * 7 6 5 21 21 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46596 * 299.99929 * 1 2 3 23 23 H 1.09004 * 109.47031 * 59.99179 * 1 2 3 24 24 H 1.09000 * 109.47403 * 59.99868 * 4 2 1 25 25 H 1.09004 * 109.46741 * 299.99732 * 4 2 1 26 26 H 1.09004 * 109.47325 * 299.99623 * 5 4 2 27 27 H 1.09002 * 109.47016 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.47630 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.47346 * 59.99924 * 6 5 4 30 30 H 1.09002 * 109.47153 * 304.99767 * 9 7 6 31 31 H 1.09001 * 109.46832 * 184.99958 * 9 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 10 9 7 33 33 H 1.08992 * 109.47399 * 59.99823 * 10 9 7 34 34 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 35 35 H 0.96993 * 120.00311 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.46881 * 60.00674 * 20 7 6 37 37 H 1.09002 * 109.47016 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7217 -1.2491 6 6 4.0795 -1.4434 0.0001 7 6 3.5696 -0.7222 1.2494 8 1 3.9333 0.3053 1.2496 9 6 4.0797 -1.4435 2.4986 10 6 5.6045 -1.3355 2.5629 11 7 6.0929 -2.0267 3.7587 12 6 7.4350 -2.0635 4.0280 13 1 8.1336 -1.5834 3.3586 14 6 7.8980 -2.7189 5.1607 15 7 7.0468 -3.3045 5.9762 16 14 9.7287 -2.7686 5.5284 17 1 10.0988 -1.5949 6.3596 18 1 10.0522 -4.0175 6.2637 19 1 10.4907 -2.7329 4.2543 20 6 2.0396 -0.7217 1.2491 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 1.6766 -0.2073 -2.1393 25 1 1.6766 -1.7488 -1.2494 26 1 3.9337 0.3058 -1.2488 27 1 3.9332 -1.2359 -2.1389 28 1 5.1695 -1.4434 0.0005 29 1 3.7158 -2.4710 -0.0001 30 1 3.7913 -2.4938 2.4549 31 1 3.6451 -0.9840 3.3863 32 1 6.0391 -1.7950 1.6751 33 1 5.8928 -0.2853 2.6066 34 1 5.4657 -2.4582 4.3597 35 1 7.3702 -3.7621 6.7679 36 1 1.6759 -1.7492 1.2489 37 1 1.6763 -0.2075 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070532398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = -35.031317 kcal Electronic energy + Delta-G solvation = -14121.406298 eV Core-core repulsion = 11897.000211 eV Total energy + Delta-G solvation = -2224.406087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99249 -35.23797 -33.16416 -31.81589 -30.55710 -27.35807 -26.27444 -23.77499 -21.92014 -21.63787 -19.84621 -19.64490 -16.94524 -15.24749 -14.86005 -14.61957 -14.30845 -13.90894 -13.71037 -13.15321 -13.02131 -12.80434 -12.38282 -11.82701 -11.68452 -11.53744 -11.16435 -10.89964 -10.86357 -10.76480 -10.67696 -10.45656 -10.20351 -10.12569 -9.81937 -9.70616 -9.51719 -8.79340 -6.84134 -5.70656 -2.98634 3.47216 3.51846 3.53926 4.61496 4.69822 4.74339 4.81914 5.16898 5.21904 5.41428 5.45804 5.51608 5.57546 5.62507 5.65327 5.71791 5.81643 5.91517 5.94673 6.03214 6.04684 6.17901 6.21343 6.24194 6.31370 6.39438 6.47995 6.54337 6.58227 6.66611 6.99034 7.04259 7.75235 8.48958 9.59439 10.19838 10.54334 11.52642 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068026 B = 0.005244 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.511323 B = 5338.458842 C = 5614.053128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.082 4.082 8 H 0.067 0.933 9 C -0.121 4.121 10 C 0.152 3.848 11 N -0.735 5.735 12 C -0.237 4.237 13 H 0.069 0.931 14 C -0.016 4.016 15 N -0.935 5.935 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.108 4.108 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.020 0.980 33 H 0.015 0.985 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 5.859 -13.407 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.101 4.101 8 H 0.085 0.915 9 C -0.159 4.159 10 C 0.025 3.975 11 N -0.379 5.379 12 C -0.368 4.368 13 H 0.087 0.913 14 C -0.212 4.212 15 N -0.585 5.585 16 Si 0.738 3.262 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.146 4.146 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.216 0.784 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.528 5.875 -13.426 18.646 hybrid contribution 0.823 -0.208 0.508 0.990 sum -10.705 5.667 -12.917 17.708 Atomic orbital electron populations 1.21835 0.95681 1.01622 1.01289 1.21144 0.94971 0.99649 0.95358 0.91450 1.21590 0.95859 1.00462 0.97125 1.21546 0.95331 1.00722 0.98100 1.21649 1.01008 0.99109 0.93612 1.21089 0.94495 0.99685 0.94810 0.91472 1.21763 0.97164 1.00296 0.96678 1.20706 0.91110 0.95174 0.90531 1.42409 1.05290 1.64929 1.25299 1.19262 0.83966 1.28193 1.05416 0.91260 1.24740 0.97660 1.01027 0.97764 1.69663 1.32748 1.40880 1.15161 0.86187 0.85179 0.77000 0.77846 1.21755 1.21783 1.20781 1.21648 0.95530 1.00465 0.96916 0.92822 0.92814 0.93074 0.92605 0.92172 0.92229 0.92404 0.91336 0.92162 0.92161 0.92180 0.96246 0.96728 0.78386 0.93582 0.92098 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -0.95 2.72 -90.62 -0.25 -1.20 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 5 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 6 C -0.12 -1.52 4.96 -26.73 -0.13 -1.65 16 7 C -0.08 -1.12 2.19 -90.62 -0.20 -1.32 16 8 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 9 C -0.12 -2.08 4.80 -26.73 -0.13 -2.21 16 10 C 0.15 3.24 6.01 -4.04 -0.02 3.21 16 11 N -0.74 -19.69 5.60 -59.91 -0.34 -20.03 16 12 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 13 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -29.17 13.06 55.49 0.72 -28.44 16 16 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 20 C -0.11 -1.29 4.48 -26.73 -0.12 -1.41 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.97 6.56 -51.93 -0.34 0.63 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.02 0.42 6.56 -51.93 -0.34 0.08 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 35 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -30.70 289.58 -8.21 -38.91 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.88 Total: 3.19 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.05 Total: -15.94 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.39 Total: -48.47 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.70 -8.21 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070532398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.878 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds