Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47242 * 2 1 4 4 C 1.53004 * 109.46826 * 240.00575 * 2 1 3 5 5 C 1.52997 * 109.47024 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47504 * 59.99687 * 5 4 2 7 7 C 1.53004 * 109.47236 * 300.00184 * 6 5 4 8 8 H 1.09004 * 109.46741 * 300.00111 * 7 6 5 9 9 C 1.52997 * 109.47236 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47060 * 65.00086 * 9 7 6 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.36936 * 120.00002 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00140 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00175 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00164 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47433 * 89.99724 * 16 14 12 18 18 H 1.48495 * 109.47040 * 209.99943 * 16 14 12 19 19 H 1.48501 * 109.47069 * 329.99442 * 16 14 12 20 20 C 1.52997 * 109.47024 * 59.99522 * 7 6 5 21 21 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46596 * 299.99929 * 1 2 3 23 23 H 1.09004 * 109.47031 * 59.99179 * 1 2 3 24 24 H 1.09000 * 109.47403 * 59.99868 * 4 2 1 25 25 H 1.09004 * 109.46741 * 299.99732 * 4 2 1 26 26 H 1.09004 * 109.47325 * 299.99623 * 5 4 2 27 27 H 1.09002 * 109.47016 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.47630 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.47346 * 59.99924 * 6 5 4 30 30 H 1.09002 * 109.47153 * 304.99767 * 9 7 6 31 31 H 1.09001 * 109.46832 * 184.99958 * 9 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 10 9 7 33 33 H 1.08992 * 109.47399 * 59.99823 * 10 9 7 34 34 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 35 35 H 0.96993 * 120.00311 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.46881 * 60.00674 * 20 7 6 37 37 H 1.09002 * 109.47016 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7217 -1.2491 6 6 4.0795 -1.4434 0.0001 7 6 3.5696 -0.7222 1.2494 8 1 3.9333 0.3053 1.2496 9 6 4.0797 -1.4435 2.4986 10 6 5.6045 -1.3355 2.5629 11 7 6.0929 -2.0267 3.7587 12 6 7.4350 -2.0635 4.0280 13 1 8.1336 -1.5834 3.3586 14 6 7.8980 -2.7189 5.1607 15 7 7.0468 -3.3045 5.9762 16 14 9.7287 -2.7686 5.5284 17 1 10.0988 -1.5949 6.3596 18 1 10.0522 -4.0175 6.2637 19 1 10.4907 -2.7329 4.2543 20 6 2.0396 -0.7217 1.2491 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 1.6766 -0.2073 -2.1393 25 1 1.6766 -1.7488 -1.2494 26 1 3.9337 0.3058 -1.2488 27 1 3.9332 -1.2359 -2.1389 28 1 5.1695 -1.4434 0.0005 29 1 3.7158 -2.4710 -0.0001 30 1 3.7913 -2.4938 2.4549 31 1 3.6451 -0.9840 3.3863 32 1 6.0391 -1.7950 1.6751 33 1 5.8928 -0.2853 2.6066 34 1 5.4657 -2.4582 4.3597 35 1 7.3702 -3.7621 6.7679 36 1 1.6759 -1.7492 1.2489 37 1 1.6763 -0.2075 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070532398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = -52.374561 kcal Electronic energy + Delta-G solvation = -14122.158357 eV Core-core repulsion = 11897.000211 eV Total energy + Delta-G solvation = -2225.158146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00521 -36.96528 -34.72584 -33.00785 -32.22178 -28.92588 -27.14902 -25.68014 -23.30749 -22.85211 -21.07075 -20.59379 -19.09948 -16.77204 -16.11505 -15.97142 -15.60226 -15.31735 -15.02462 -14.73284 -14.45318 -14.02379 -13.27192 -13.15251 -12.89549 -12.77882 -12.67855 -12.56719 -12.27823 -12.14025 -11.88692 -11.81015 -11.78005 -11.57579 -11.25590 -10.97242 -10.77626 -10.71528 -9.01769 -7.96973 -5.26683 1.45962 1.48645 1.57238 2.55059 3.36317 3.66468 3.81434 3.87591 4.13335 4.17284 4.27137 4.44415 4.52839 4.58582 4.64197 4.65748 4.81470 4.83525 4.85215 4.88549 5.04162 5.06130 5.15270 5.23210 5.25641 5.31015 5.37624 5.43289 5.46950 5.48048 5.52843 5.57026 5.70241 6.25736 7.30997 8.07502 8.31257 9.27011 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068026 B = 0.005244 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.511323 B = 5338.458842 C = 5614.053128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.075 4.075 8 H 0.067 0.933 9 C -0.110 4.110 10 C 0.151 3.849 11 N -0.750 5.750 12 C -0.251 4.251 13 H 0.074 0.926 14 C -0.076 4.076 15 N -0.971 5.971 16 Si 0.977 3.023 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.269 1.269 20 C -0.105 4.105 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.014 0.986 34 H 0.373 0.627 35 H 0.252 0.748 36 H 0.058 0.942 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 6.582 -14.737 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.094 4.094 8 H 0.086 0.914 9 C -0.147 4.147 10 C 0.025 3.975 11 N -0.393 5.393 12 C -0.382 4.382 13 H 0.092 0.908 14 C -0.269 4.269 15 N -0.622 5.622 16 Si 0.806 3.194 17 H -0.212 1.212 18 H -0.219 1.219 19 H -0.193 1.193 20 C -0.143 4.143 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.204 0.796 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.743 6.622 -14.796 20.017 hybrid contribution 0.869 -0.416 0.895 1.315 sum -10.874 6.206 -13.901 18.708 Atomic orbital electron populations 1.21809 0.94481 1.01896 1.01996 1.21127 0.95956 0.99383 0.94425 0.91321 1.21586 0.94940 1.00658 0.97620 1.21520 0.96140 1.00598 0.97064 1.21624 1.00020 0.99197 0.94516 1.21027 0.95950 0.99108 0.93288 0.91425 1.21659 0.94243 1.00428 0.98419 1.20872 0.93795 0.94291 0.88527 1.42662 1.04592 1.65369 1.26673 1.19678 0.85242 1.27781 1.05538 0.90760 1.25631 1.02407 1.01068 0.97749 1.69825 1.34836 1.41936 1.15620 0.85085 0.79636 0.76761 0.77955 1.21183 1.21897 1.19348 1.21612 0.93815 1.00717 0.98106 0.92777 0.92716 0.91820 0.90935 0.92223 0.91926 0.91458 0.92909 0.92581 0.92784 0.92730 0.95971 0.96772 0.79589 0.93885 0.92316 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 2 C -0.09 -1.65 2.72 -10.79 -0.03 -1.68 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.92 5.20 30.59 0.16 -1.76 16 5 C -0.12 -2.29 5.92 30.59 0.18 -2.10 16 6 C -0.12 -2.92 4.96 30.59 0.15 -2.77 16 7 C -0.07 -1.99 2.19 -10.79 -0.02 -2.01 16 8 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 9 C -0.11 -3.77 4.80 30.59 0.15 -3.62 16 10 C 0.15 6.47 6.01 86.38 0.52 6.99 16 11 N -0.75 -40.76 5.60 -343.46 -1.92 -42.68 16 12 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 13 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 15 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 16 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 C -0.10 -2.36 4.48 30.59 0.14 -2.22 16 21 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.48 6.56 -2.39 -0.02 1.46 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.02 0.95 6.56 -2.39 -0.02 0.94 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.37 21.36 7.67 -92.70 -0.71 20.65 16 35 H 0.25 15.32 8.31 -92.71 -0.77 14.54 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.60 289.58 3.89 -60.71 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.29 Total: 22.47 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.21 Total: -28.71 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -1.64 Total: -103.72 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -64.60 3.89 -60.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070532398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.335 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds